BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.3
(792 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI070213.1|BI070213 C016P12U Populus strain T89 leaves P... 76 2e-012
gb|BU814624.1|BU814624 N031A10 Populus bark cDNA library Po... 76 2e-012
gb|BU885878.1|BU885878 R037E02 Populus root cDNA library Po... 76 2e-012
gb|BU897916.1|BU897916 X071H02 Populus wood cDNA library Po... 76 2e-012
gb|CK100267.1|CK100267 C016P12.5pR Populus strain T89 leave... 76 2e-012
gb|CX178660.1|CX178660 G11_45-62_13.ab1 leaf inoculated wit... 76 2e-012
gb|BU814626.1|BU814626 N031A12 Populus bark cDNA library Po... 70 1e-010
gb|CK116788.1|CK116788 B017P65 Hybrid aspen plasmid library... 64 9e-009
gb|AJ772309.1|AJ772309 AJ772309 Populus euphratica shoot in... 56 2e-006
gb|AJ772578.1|AJ772578 AJ772578 Populus euphratica shoot in... 56 2e-006
gb|AJ772705.1|AJ772705 AJ772705 Populus euphratica shoot in... 56 2e-006
gb|AJ772799.1|AJ772799 AJ772799 Populus euphratica shoot in... 56 2e-006
gb|AJ770394.1|AJ770394 AJ770394 Populus euphratica leaf 3-6... 56 2e-006
gb|AJ780615.1|AJ780615 AJ780615 Populus euphratica leaf 3-6... 54 8e-006
gb|CX172787.1|CX172787 G12_69-41_14.ab1 leaf inoculated wit... 54 8e-006
gb|CX178524.1|CX178524 E10_45-85_10.ab1 leaf inoculated wit... 54 8e-006
gb|CX181754.1|CX181754 C11_45-76_05.ab1 leaf inoculated wit... 54 8e-006
gb|CX183392.1|CX183392 F03_45-49_11.ab1 leaf inoculated wit... 54 8e-006
gb|CX187077.1|CX187077 D02_45-47_08.ab1 leaf inoculated wit... 54 8e-006
gb|BI138277.1|BI138277 F102P58Y Populus flower cDNA library... 48 5e-004
gb|BI139224.1|BI139224 F126P72Y Populus flower cDNA library... 48 5e-004
gb|CV232647.1|CV232647 WS0198.B21_D24 PT-DX-N-A-10 Populus ... 48 5e-004
gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus... 48 5e-004
gb|CX185661.1|CX185661 D05_45-22_07.ab1 leaf inoculated wit... 46 0.002
gb|CV274944.1|CV274944 WS0174.B21.1_O02 PTxD-NR-A-8 Populus... 42 0.032
gb|CX174046.1|CX174046 D07_69-64_07.ab1 leaf inoculated wit... 42 0.032
gb|BU885111.1|BU885111 R020G10 Populus root cDNA library Po... 40 0.13
gb|DT518094.1|DT518094 WS02436.B21_C23 PTxD-ICC-N-A-14 Popu... 40 0.13
gb|BU881120.1|BU881120 UM58TH09 Populus flower cDNA library... 38 0.50
gb|BU887486.1|BU887486 R062A10 Populus root cDNA library Po... 38 0.50
gb|AJ776847.1|AJ776847 AJ776847 Populus euphratica root 3-6... 38 0.50
gb|CV243219.1|CV243219 WS02518.B21_D22 PT-MB-N-A-15 Populus... 38 0.50
gb|CV246467.1|CV246467 WS01110.B21_J17 PT-P-FL-A-2 Populus ... 38 0.50
gb|CX170378.1|CX170378 D03_69-102_07.ab1 leaf inoculated wi... 38 0.50
gb|DT489660.1|DT489660 WS02542.B21_N10 PT-MB-N-A-15 Populus... 38 0.50
gb|DT509696.1|DT509696 WS02424.BR_H04 PTxD-ICC-N-A-14 Popul... 38 0.50
>gb|BI070213.1|BI070213 C016P12U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 437
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 162 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 221
Query: 552 caagtatgtatcaattgcggtgtttgcatggggaaatacttctgtg 597
||||| |||||||| || ||||| |||||||| || ||||||||||
Sbjct: 222 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 267
>gb|BU814624.1|BU814624 N031A10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 689
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 512 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 571
Query: 552 caagtatgtatcaattgcggtgtttgcatggggaaatacttctgtg 597
||||| |||||||| || ||||| |||||||| || ||||||||||
Sbjct: 572 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 617
>gb|BU885878.1|BU885878 R037E02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 166 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 225
Query: 552 caagtatgtatcaattgcggtgtttgcatggggaaatacttctgtg 597
||||| |||||||| || ||||| |||||||| || ||||||||||
Sbjct: 226 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 271
Score = 48.1 bits (24), Expect = 5e-004
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 681 gagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagt 740
|||||||||||||| |||| |||||||| || ||||| || | | |||||||||||
Sbjct: 355 gagaatttcttccattgttacaaatgtggctgctgctactcgaatcttctgaagaatagc 414
Query: 741 catgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
|| | ||||| || || ||||||||||||||||| || ||||||| ||||
Sbjct: 415 cacccctgtgtagagggcgcgatgcatcatgactgccctgtctgctttgagt 466
>gb|BU897916.1|BU897916 X071H02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 710
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 576 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 635
Query: 552 caagtatgtatcaattgcggtgtttgcatggggaaatacttctgtg 597
||||| |||||||| || ||||| |||||||| || ||||||||||
Sbjct: 636 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 681
>gb|CK100267.1|CK100267 C016P12.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C016P12 5', mRNA sequence
Length = 669
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 167 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 226
Query: 552 caagtatgtatcaattgcggtgtttgcatggggaaatacttctgtg 597
||||| |||||||| || ||||| |||||||| || ||||||||||
Sbjct: 227 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 272
Score = 46.1 bits (23), Expect = 0.002
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 681 gagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagt 740
|||||||||||||| |||| |||||||| || ||||| || | | |||||||||||
Sbjct: 356 gagaatttcttccattgttacaaatgtggctgctgctactcgaatcttctgaagaatagc 415
Query: 741 catgcatgtgttgaaggggcgatgcatcatgactg 775
|| | ||||| || || |||||||||||||||||
Sbjct: 416 cacccctgtgtagagggcgcgatgcatcatgactg 450
>gb|CX178660.1|CX178660 G11_45-62_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 634
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 461 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 520
Query: 552 caagtatgtatcaattgcggtgtttgcatggggaaatacttctgtg 597
||||| |||||||| || ||||| |||||||| || ||||||||||
Sbjct: 521 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 566
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| |||||||| |||||| | |||||||||||
Sbjct: 356 tgccgcatcagagcaccttgctgtaatgaagtatttgattgccg 399
>gb|BU814626.1|BU814626 N031A12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 685
Score = 69.9 bits (35), Expect = 1e-010
Identities = 90/107 (84%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 550 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 609
Query: 552 caagtatgta-tcaattgcggtgtttgcatggggaaatacttctgtg 597
||||| |||| |||| |||||||| |||||||| || ||||||||||
Sbjct: 610 caagtttgtattcaactgcggtgtgtgcatgggaaagtacttctgtg 656
>gb|CK116788.1|CK116788 B017P65 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B017P65 5', mRNA sequence
Length = 361
Score = 63.9 bits (32), Expect = 9e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 193 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 252
Query: 552 caagtatgtatcaattgcggtgtttgcatggg 583
||||| |||||||| || ||||| ||||||||
Sbjct: 253 caagtttgtatcaactgtggtgtgtgcatggg 284
>gb|AJ772309.1|AJ772309 AJ772309 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700004F05F1, mRNA sequence
Length = 540
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 202 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 159
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||| | | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 97 ccacgccatgaaatcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 38
Query: 552 caagtatgtatcaattgcggtgtttgcatggg 583
||||| |||||||| || ||||| ||||||||
Sbjct: 37 caagtctgtatcaactgtggtgtgtgcatggg 6
>gb|AJ772578.1|AJ772578 AJ772578 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700008F07F1, mRNA sequence
Length = 549
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||| | | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 447 ccacgccatgaaatcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 506
Query: 552 caagtatgtatcaattgcggtgtttgcatggg 583
||||| |||||||| || ||||| ||||||||
Sbjct: 507 caagtctgtatcaactgtggtgtgtgcatggg 538
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 342 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 385
>gb|AJ772705.1|AJ772705 AJ772705 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700011F05F1, mRNA sequence
Length = 565
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 339 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 382
>gb|AJ772799.1|AJ772799 AJ772799 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700015D10F1, mRNA sequence
Length = 281
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 222 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 265
>gb|AJ770394.1|AJ770394 AJ770394 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100011D01F1, mRNA sequence
Length = 450
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 492 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 551
|||||||||||| | | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 354 ccacgccatgaaatcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 413
Query: 552 caagtatgtatcaattgcggtgtttgcatggg 583
||||| |||||||| || ||||| ||||||||
Sbjct: 414 caagtttgtatcaactgtggtgtgtgcatggg 445
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| ||||||||||| ||| | |||||||||||
Sbjct: 249 tgccgcatcagagcaccttgctgcaacgaagtatttgattgccg 292
>gb|AJ780615.1|AJ780615 AJ780615 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900010D02F1, mRNA sequence
Length = 675
Score = 54.0 bits (27), Expect = 8e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 729 ctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgactg 775
||||||||||| || | ||||| |||||||||||||||||||||||
Sbjct: 584 ctgaagaatagccacccctgtgtagaaggggcgatgcatcatgactg 538
>gb|CX172787.1|CX172787 G12_69-41_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 666
Score = 54.0 bits (27), Expect = 8e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 370 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 428
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 334 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 392
Score = 42.1 bits (21), Expect = 0.032
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 573 gtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgt 625
||||||||||||||||||| |||| | |||||| ||||||| ||||||||
Sbjct: 537 gtttgcatggggaaatactactgttctaagtgcaagttcttcgatgatgatgt 589
>gb|CX178524.1|CX178524 E10_45-85_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 702
Score = 54.0 bits (27), Expect = 8e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 370 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 428
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 358 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 416
Score = 42.1 bits (21), Expect = 0.032
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 573 gtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgt 625
||||||||||||||||||| |||| | |||||| ||||||| ||||||||
Sbjct: 561 gtttgcatggggaaatactactgttctaagtgcaagttcttcgatgatgatgt 613
>gb|CX181754.1|CX181754 C11_45-76_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 742
Score = 54.0 bits (27), Expect = 8e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 370 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 428
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 463 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 521
Score = 42.1 bits (21), Expect = 0.032
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 573 gtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgt 625
||||||||||||||||||| |||| | |||||| ||||||| ||||||||
Sbjct: 666 gtttgcatggggaaatactactgttctaagtgcaagttcttcgatgatgatgt 718
>gb|CX183392.1|CX183392 F03_45-49_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 704
Score = 54.0 bits (27), Expect = 8e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 370 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 428
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 446 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 504
Score = 42.1 bits (21), Expect = 0.032
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 573 gtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgt 625
||||||||||||||||||| |||| | |||||| ||||||| ||||||||
Sbjct: 649 gtttgcatggggaaatactactgttctaagtgcaagttcttcgatgatgatgt 701
>gb|CX187077.1|CX187077 D02_45-47_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 695
Score = 54.0 bits (27), Expect = 8e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 370 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 428
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 472 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 530
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 573 gtttgcatggggaaatact 591
|||||||||||||||||||
Sbjct: 675 gtttgcatggggaaatact 693
>gb|BI138277.1|BI138277 F102P58Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 353
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| |||||||| |||||| | |||||||||||
Sbjct: 133 tgccgcatcagagcaccttgctgtaatgaagtatttgattgccg 176
>gb|BI139224.1|BI139224 F126P72Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 213
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 430
|||||||| ||||| |||||||| |||||| | |||||||||||
Sbjct: 78 tgccgcatcagagcaccttgctgtaatgaagtatttgattgccg 121
>gb|CV232647.1|CV232647 WS0198.B21_D24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_D24 3', mRNA sequence
Length = 780
Score = 48.1 bits (24), Expect = 5e-004
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 681 gagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagt 740
|||||||||||||| |||| |||||||| || ||||| || | | |||||||||||
Sbjct: 729 gagaatttcttccattgttacaaatgtggctgctgctactcgaatcttctgaagaatagc 670
Query: 741 catgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
|| | ||||| || || ||||||||||||||||| || ||||||| ||||
Sbjct: 669 cacccctgtgtagagggcgcgatgcatcatgactgccctgtctgctttgagt 618
>gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_I12 3', mRNA sequence
Length = 840
Score = 48.1 bits (24), Expect = 5e-004
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 681 gagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagt 740
|||||||||||||| |||| |||||||| || ||||| || | | |||||||||||
Sbjct: 729 gagaatttcttccattgttacaaatgtggctgctgctactcgaatcttctgaagaatagc 670
Query: 741 catgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
|| | ||||| || || ||||||||||||||||| || ||||||| ||||
Sbjct: 669 cacccctgtgtagagggcgcgatgcatcatgactgccctgtctgctttgagt 618
>gb|CX185661.1|CX185661 D05_45-22_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 370 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 428
|||||||||| ||||||||| || | ||| ||||| ||||||||||| |||||||||
Sbjct: 226 cacattataggaggagatgcaagattaaagcaccttgttgcaatgaaatctttgattgc 284
Score = 42.1 bits (21), Expect = 0.032
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 573 gtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgt 625
||||||||||||||||||| |||| | |||||| ||||||| ||||||||
Sbjct: 429 gtttgcatggggaaatactactgttctaagtgcaagttcttcgatgatgatgt 481
>gb|CV274944.1|CV274944 WS0174.B21.1_O02 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_O02 3', mRNA sequence
Length = 940
Score = 42.1 bits (21), Expect = 0.032
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 573 gtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgt 625
||||||||||||||||||| |||| | |||||| ||||||| ||||||||
Sbjct: 822 gtttgcatggggaaatactactgttctaagtgcaagttcttcgatgatgatgt 770
>gb|CX174046.1|CX174046 D07_69-64_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.032
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 573 gtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgt 625
||||||||||||||||||| |||| | |||||| ||||||| ||||||||
Sbjct: 190 gtttgcatggggaaatactactgttctaagtgcaagttcttcgatgatgatgt 242
>gb|BU885111.1|BU885111 R020G10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.13
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 729 ctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttc 788
||||||||||| || | ||||| || || ||||||||||||||||| || |||||||
Sbjct: 53 ctgaagaatagccacccctgtgtagagggcgcgatgcatcatgactgccctgtctgcttt 112
Query: 789 gagt 792
||||
Sbjct: 113 gagt 116
>gb|DT518094.1|DT518094 WS02436.B21_C23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_C23 3', mRNA sequence
Length = 951
Score = 40.1 bits (20), Expect = 0.13
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 729 ctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttc 788
||||||||||| || | ||||| || || ||||||||||||||||| || |||||||
Sbjct: 923 ctgaagaatagccacccctgtgtagagggcgcgatgcatcatgactgccctgtctgcttt 864
Query: 789 gagt 792
||||
Sbjct: 863 gagt 860
>gb|BU881120.1|BU881120 UM58TH09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.50
Identities = 73/91 (80%)
Strand = Plus / Plus
Query: 633 cagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttc 692
|||||||| || ||||| | |||||| || || |||| ||||| | ||||||||||||
Sbjct: 355 cagcagtaccattgcaatgaatgtggcatctgcagaactggaggaaaggagaatttcttt 414
Query: 693 cactgttcaaaatgtggatgttgctattcaa 723
|||||| | ||| ||||| ||||||||||
Sbjct: 415 cactgtaatagatgcggatgctgctattcaa 445
>gb|BU887486.1|BU887486 R062A10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.50
Identities = 73/91 (80%)
Strand = Plus / Plus
Query: 633 cagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttc 692
|||||||| || ||||| | |||||| || || |||| ||||| | ||||||||||||
Sbjct: 440 cagcagtaccattgcaatgaatgtggcatctgcagaactggaggaaaggagaatttcttt 499
Query: 693 cactgttcaaaatgtggatgttgctattcaa 723
|||||| | ||| ||||| ||||||||||
Sbjct: 500 cactgtaatagatgcggatgctgctattcaa 530
>gb|AJ776847.1|AJ776847 AJ776847 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400019D10F1, mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 697 gttcaaaatgtggatgttg 715
|||||||||||||||||||
Sbjct: 517 gttcaaaatgtggatgttg 535
>gb|CV243219.1|CV243219 WS02518.B21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_D22 3', mRNA sequence
Length = 944
Score = 38.2 bits (19), Expect = 0.50
Identities = 73/91 (80%)
Strand = Plus / Plus
Query: 633 cagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttc 692
|||||||| || ||||| | |||||| || || |||| ||||| | ||||||||||||
Sbjct: 376 cagcagtaccattgcaatgaatgtggcatctgcagaactggaggaaaggagaatttcttt 435
Query: 693 cactgttcaaaatgtggatgttgctattcaa 723
|||||| | ||| ||||| ||||||||||
Sbjct: 436 cactgtaatagatgcggatgctgctattcaa 466
>gb|CV246467.1|CV246467 WS01110.B21_J17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_J17 3', mRNA sequence
Length = 718
Score = 38.2 bits (19), Expect = 0.50
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 654 tgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgtggatgt 713
||||||||||| |||| ||||| | ||| ||||||||||| || |||||||| |||
Sbjct: 678 tgtggaatatgcagaactggaggaaaggaaaatttcttccattgcaacaaatgtggttgt 619
Query: 714 tgctattcaat 724
|| ||||||||
Sbjct: 618 tgttattcaat 608
>gb|CX170378.1|CX170378 D03_69-102_07.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 638
Score = 38.2 bits (19), Expect = 0.50
Identities = 73/91 (80%)
Strand = Plus / Plus
Query: 633 cagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttc 692
|||||||| || ||||| | |||||| || || |||| ||||| | ||||||||||||
Sbjct: 478 cagcagtaccattgcaatgaatgtggcatctgcagaactggaggaaaggagaatttcttt 537
Query: 693 cactgttcaaaatgtggatgttgctattcaa 723
|||||| | ||| ||||| ||||||||||
Sbjct: 538 cactgtaatagatgcggatgctgctattcaa 568
>gb|DT489660.1|DT489660 WS02542.B21_N10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_N10 3', mRNA sequence
Length = 919
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 697 gttcaaaatgtggatgttg 715
|||||||||||||||||||
Sbjct: 763 gttcaaaatgtggatgttg 745
>gb|DT509696.1|DT509696 WS02424.BR_H04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_H04 5', mRNA sequence
Length = 464
Score = 38.2 bits (19), Expect = 0.50
Identities = 73/91 (80%)
Strand = Plus / Plus
Query: 633 cagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttc 692
|||||||| || ||||| | |||||| || || |||| ||||| | ||||||||||||
Sbjct: 228 cagcagtaccattgcaatgaatgtggcatctgcagaactggaggaaaggagaatttcttt 287
Query: 693 cactgttcaaaatgtggatgttgctattcaa 723
|||||| | ||| ||||| ||||||||||
Sbjct: 288 cactgtaatagatgcggatgctgctattcaa 318
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,096
Number of Sequences: 369679
Number of extensions: 91096
Number of successful extensions: 26097
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26016
Number of HSP's gapped (non-prelim): 78
length of query: 792
length of database: 203,408,664
effective HSP length: 19
effective length of query: 773
effective length of database: 196,384,763
effective search space: 151805421799
effective search space used: 151805421799
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)