BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3184970.2.1
(1043 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubat... 46 0.003
gb|CK116138.1|CK116138 Y020E02 Populus infected leaf substr... 46 0.003
gb|CN521326.1|CN521326 GQ0113.B3_N16 GQ011 Populus trichoca... 46 0.003
gb|CV277108.1|CV277108 WS0142.B21_K21 PTxD-IL-A-5 Populus t... 46 0.003
gb|CV277118.1|CV277118 WS0142.B21_L08 PTxD-IL-A-5 Populus t... 46 0.003
gb|CV278412.1|CV278412 WS0146.B21_F07 PTxD-IL-A-5 Populus t... 46 0.003
gb|CV278675.1|CV278675 WS0147.B21_B05 PTxD-IL-A-5 Populus t... 46 0.003
gb|CV279081.1|CV279081 WS0148.B21_F07 PTxD-IL-A-5 Populus t... 46 0.003
gb|CV280456.1|CV280456 WS0136.B21_F10 PTxD-IL-FL-A-4 Populu... 46 0.003
gb|CV281701.1|CV281701 WS0182.B21_K03 PTxD-IL-N-A-9 Populus... 46 0.003
gb|CX655836.1|CX655836 PO02040G07 Poplar SC cDNA library Po... 46 0.003
gb|CX658483.1|CX658483 PO01035F02 Poplar SC cDNA library Po... 46 0.003
gb|CX659018.1|CX659018 PO01025E01 Poplar SC cDNA library Po... 46 0.003
gb|CX659039.1|CX659039 PO01025G05 Poplar SC cDNA library Po... 46 0.003
gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Po... 46 0.003
gb|CX659804.1|CX659804 PO01014C12 Poplar SC cDNA library Po... 46 0.003
gb|M25336.1|POPCHIA Populus x generosa clone win6d. chitina... 46 0.003
gb|U01660.1|U01660 Populus x generosa strain H11-11 putativ... 46 0.003
gb|U01661.1|U01661 Populus x generosa strain H11-11 putativ... 46 0.003
gb|CV277227.1|CV277227 WS0143.B21_A03 PTxD-IL-A-5 Populus t... 44 0.011
gb|DT526378.1|DT526378 WS02047.C21_N24 PTxN-IB-N-A-11 Popul... 44 0.011
gb|BI072858.1|BI072858 C089P63U Populus strain T89 leaves P... 40 0.17
gb|BI125794.1|BI125794 I066P14P Populus leaf cDNA library P... 40 0.17
gb|BI126016.1|BI126016 I069P24P Populus leaf cDNA library P... 40 0.17
gb|BU816847.1|BU816847 UA10BPA08 Populus tremula cambium cD... 40 0.17
gb|BU818936.1|BU818936 UA37BPD06 Populus tremula cambium cD... 40 0.17
gb|BU818950.1|BU818950 UA37BPE08 Populus tremula cambium cD... 40 0.17
gb|BU819999.1|BU819999 UA50BPB05 Populus tremula cambium cD... 40 0.17
gb|CA924071.1|CA924071 MTU7CL.P1.D04 Aspen leaf cDNA Librar... 40 0.17
gb|CA924288.1|CA924288 MTU7CL.P3.H12 Aspen leaf cDNA Librar... 40 0.17
gb|CA927240.1|CA927240 MTU6CR.P6.F08 Aspen root cDNA Librar... 40 0.17
gb|CK095894.1|CK095894 UA34CPE04.3pR Populus dormant cambiu... 40 0.17
gb|CK095940.1|CK095940 UA37BPE08.3pR Populus dormant cambiu... 40 0.17
gb|CK105758.1|CK105758 UA37BPE08.5pR Populus dormant cambiu... 40 0.17
gb|CK115736.1|CK115736 Y014F08 Populus infected leaf substr... 40 0.17
>gb|CA821239.1|CA821239 RA01E01 three-week-old roots incubated in 5uM indole-3-acetic acid
24h before harvesting Populus alba x Populus tremula
cDNA 5', mRNA sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 258 gtcatccagaaccaaattgctgtcttgaaggagat 224
>gb|CK116138.1|CK116138 Y020E02 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y020E02 5', mRNA sequence
Length = 404
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 149 gtcatccagaaccaaattgctgtcttgaaggagat 115
>gb|CN521326.1|CN521326 GQ0113.B3_N16 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0113_N16 5', mRNA sequence
Length = 608
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 478 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 440
>gb|CV277108.1|CV277108 WS0142.B21_K21 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_K21 3', mRNA sequence
Length = 940
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 429 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 467
>gb|CV277118.1|CV277118 WS0142.B21_L08 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_L08 3', mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 387 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 425
>gb|CV278412.1|CV278412 WS0146.B21_F07 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0146_F07 3', mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 387 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 425
>gb|CV278675.1|CV278675 WS0147.B21_B05 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0147_B05 3', mRNA sequence
Length = 821
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 387 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 425
>gb|CV279081.1|CV279081 WS0148.B21_F07 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0148_F07 3', mRNA sequence
Length = 766
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 508 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 546
>gb|CV280456.1|CV280456 WS0136.B21_F10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_F10 3', mRNA sequence
Length = 870
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 510 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 548
>gb|CV281701.1|CV281701 WS0182.B21_K03 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0182_K03 3', mRNA sequence
Length = 930
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 387 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 425
>gb|CX655836.1|CX655836 PO02040G07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02040G07 5', mRNA sequence
Length = 185
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 131 gtcatccagaaccaaattgctgtcttgaaggagat 97
>gb|CX658483.1|CX658483 PO01035F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035F02 5', mRNA sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 69 gtcatccagaaccaaattgctgtcttgaaggagat 35
>gb|CX659018.1|CX659018 PO01025E01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025E01 5', mRNA sequence
Length = 417
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 68 gtcatccagaaccaaattgctgtcttgaaggagat 34
>gb|CX659039.1|CX659039 PO01025G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025G05 5', mRNA sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 209 gtcatccagaaccaaattgctgtcttgaaggagat 175
>gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014C09 5', mRNA sequence
Length = 397
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 48 gtcatccagaaccaaattgctgtcttgaaggagat 14
>gb|CX659804.1|CX659804 PO01014C12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014C12 5', mRNA sequence
Length = 471
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagat 533
|||||||||||||| || || ||||||||||||||
Sbjct: 122 gtcatccagaaccaaattgctgtcttgaaggagat 88
>gb|M25336.1|POPCHIA Populus x generosa clone win6d. chitinase (CHI) mRNA, partial cds
Length = 726
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 358 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 320
>gb|U01660.1|U01660 Populus x generosa strain H11-11 putative acidic four domain
chitinase mRNA, complete cds
Length = 1109
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 739 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 701
>gb|U01661.1|U01661 Populus x generosa strain H11-11 putative acidic four domain
chitinase gene, complete cds
Length = 1635
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacgg 538
||||||| |||||||| || ||||||||||| |||||||
Sbjct: 1264 tcatccaaaaccagattgctgtcttgaaggaaatgacgg 1226
>gb|CV277227.1|CV277227 WS0143.B21_A03 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0143_A03 3', mRNA sequence
Length = 961
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagatgac 536
|||||||| |||||||| || ||||||||||| |||||
Sbjct: 505 gtcatccaaaaccagattgctgtcttgaaggaaatgac 542
>gb|DT526378.1|DT526378 WS02047.C21_N24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02047_N24 3', mRNA sequence
Length = 526
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 499 gtcatccagaaccagatggccgtcttgaaggagatgac 536
|||||||| |||||||| || ||||||||||| |||||
Sbjct: 438 gtcatccaaaaccagattgctgtcttgaaggaaatgac 475
>gb|BI072858.1|BI072858 C089P63U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 210
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 ttgatttgatttgatttatt 93
||||||||||||||||||||
Sbjct: 52 ttgatttgatttgatttatt 33
>gb|BI125794.1|BI125794 I066P14P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 132 gtcatccagaaccaaattgctgtcttgaagga 101
>gb|BI126016.1|BI126016 I069P24P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 276
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 tttgatttgatttgatttat 92
||||||||||||||||||||
Sbjct: 158 tttgatttgatttgatttat 177
>gb|BU816847.1|BU816847 UA10BPA08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 124 gtcatccagaaccaaattgctgtcttgaagga 93
>gb|BU818936.1|BU818936 UA37BPD06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 233 gtcatccagaaccaaattgctgtcttgaagga 202
>gb|BU818950.1|BU818950 UA37BPE08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 211 gtcatccagaaccaaattgctgtcttgaagga 180
>gb|BU819999.1|BU819999 UA50BPB05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 420 gtcatccagaaccaaattgctgtcttgaagga 389
>gb|CA924071.1|CA924071 MTU7CL.P1.D04 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 181 gtcatccagaaccaaattgctgtcttgaagga 212
>gb|CA924288.1|CA924288 MTU7CL.P3.H12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 181 gtcatccagaaccaaattgctgtcttgaagga 212
>gb|CA927240.1|CA927240 MTU6CR.P6.F08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 181 gtcatccagaaccaaattgctgtcttgaagga 212
>gb|CK095894.1|CK095894 UA34CPE04.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA34CPE04 3', mRNA sequence
Length = 373
Score = 40.1 bits (20), Expect = 0.17
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 471 gtggcacgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaagga 530
|||||| || ||||| || | |||||| | |||||| ||||| || ||||||||||||||
Sbjct: 207 gtggcatgagggctttggagactgcgctgccatccaaaaccaaattgccgtcttgaagga 266
>gb|CK095940.1|CK095940 UA37BPE08.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA37BPE08 3', mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 371 gtcatccagaaccaaattgctgtcttgaagga 402
>gb|CK105758.1|CK105758 UA37BPE08.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA37BPE08 5', mRNA sequence
Length = 219
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 499 gtcatccagaaccagatggccgtcttgaagga 530
|||||||||||||| || || |||||||||||
Sbjct: 191 gtcatccagaaccaaattgctgtcttgaagga 160
>gb|CK115736.1|CK115736 Y014F08 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y014F08 5', mRNA sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 ttgatttgatttgatttatt 93
||||||||||||||||||||
Sbjct: 91 ttgatttgatttgatttatt 72
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,826
Number of Sequences: 369679
Number of extensions: 88826
Number of successful extensions: 23646
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23578
Number of HSP's gapped (non-prelim): 64
length of query: 1043
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1024
effective length of database: 196,384,763
effective search space: 201097997312
effective search space used: 201097997312
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)