BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762970.2.1
(578 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX659757.1|CX659757 PO01013F12 Poplar SC cDNA library Po... 38 0.36
>gb|CX659757.1|CX659757 PO01013F12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013F12 5', mRNA sequence
Length = 314
Score = 38.2 bits (19), Expect = 0.36
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 137 gaagccgtcaggaaatccctggttctcctgaagaacggcaagt 179
||||| || ||||||||||| ||||| || ||||| |||||||
Sbjct: 222 gaagctgtgaggaaatcccttgttctgctaaagaatggcaagt 264
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,208
Number of Sequences: 369679
Number of extensions: 38208
Number of successful extensions: 9801
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9800
Number of HSP's gapped (non-prelim): 1
length of query: 578
length of database: 203,408,664
effective HSP length: 19
effective length of query: 559
effective length of database: 196,384,763
effective search space: 109779082517
effective search space used: 109779082517
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)