BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521353.2.1
(1279 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV256424.1|CV256424 WS0243.B21_M22 PTxD-ICC-N-A-14 Popul... 133 2e-029
gb|CF229091.1|CF229091 PtaXM0021B2B0204 Poplar cDNA library... 119 3e-025
gb|CV131843.1|CV131843 L3P09e11 Populus stem seasonal libra... 115 4e-024
gb|BU827286.1|BU827286 UK130TG10 Populus apical shoot cDNA ... 113 2e-023
gb|BU894196.1|BU894196 X004C07 Populus wood cDNA library Po... 113 2e-023
gb|DT495069.1|DT495069 WS0112.BR_E17 PT-P-FL-A-2 Populus tr... 113 2e-023
gb|CN520985.1|CN520985 GQ0108.B3_E09 GQ010 Populus trichoca... 107 1e-021
gb|CN523910.1|CN523910 GQ015M10.T3_G01 GQ015 Populus tricho... 107 1e-021
gb|CV131588.1|CV131588 L3P01c10 Populus stem seasonal libra... 107 1e-021
gb|CX183937.1|CX183937 F11_45-59_11.ab1 leaf inoculated wit... 107 1e-021
gb|CX184305.1|CX184305 H04_45-41_16.ab1 leaf inoculated wit... 107 1e-021
gb|CK114284.1|CK114284 X005F01 Populus wood cDNA library Po... 103 2e-020
gb|BP925815.1|BP925815 BP925815 full-length enriched poplar... 92 6e-017
gb|BU826807.1|BU826807 UK125TA08 Populus apical shoot cDNA ... 80 2e-013
gb|BU894200.1|BU894200 X004C12 Populus wood cDNA library Po... 76 4e-012
gb|AI165052.1|AI165052 A074p26u Hybrid aspen plasmid librar... 64 1e-008
gb|CK090457.1|CK090457 F006P41.3pR Populus flower cDNA libr... 62 6e-008
gb|CV248062.1|CV248062 WS0112.B21_E17 PT-P-FL-A-2 Populus t... 62 6e-008
gb|DT478203.1|DT478203 WS02522.BR_C04 PT-MB-N-A-15 Populus ... 52 5e-005
gb|DT483271.1|DT483271 WS02522.B21_C04 PT-MB-N-A-15 Populus... 52 5e-005
gb|CX659701.1|CX659701 PO01012H10 Poplar SC cDNA library Po... 48 8e-004
gb|DT509687.1|DT509687 WS02424.BR_G19 PTxD-ICC-N-A-14 Popul... 44 0.013
gb|DT514293.1|DT514293 WS02424.B21_G19 PTxD-ICC-N-A-14 Popu... 44 0.013
>gb|CV256424.1|CV256424 WS0243.B21_M22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_M22 3', mRNA sequence
Length = 878
Score = 133 bits (67), Expect = 2e-029
Identities = 232/287 (80%)
Strand = Plus / Plus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||| ||||| ||||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 592 atcatggttgcaaaaggtgccatgtagtacacagtgtttatgctgtcaaatttatatcca 651
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || ||||| | || |||||||| || ||||||| || |||| | ||||
Sbjct: 652 tgcagcagagattctgcaagaatagtctttgttgaagtagccaaacatccaaataaggca 711
Query: 730 gcacagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgcca 789
||||| || || || || || || |||||||| || || || || ||||||||||| |||
Sbjct: 712 gcacaaaatccaaacatattaaaactaagctcagtaacggatgttaggagtattcctcca 771
Query: 790 actatagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccac 849
|| || || | || |||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 772 acaatcggtatcaaagaagcccaaattcgccaatcaaaatgttttctccaaactagccac 831
Query: 850 tgcagaataactgtggttgcaggagtgaaagatttgattgtctgcat 896
|||| || |||||||||||||||||| || || || ||||| |||||
Sbjct: 832 tgcaaaacaactgtggttgcaggagtaaatgactttattgtttgcat 878
>gb|CF229091.1|CF229091 PtaXM0021B2B0204 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 451
Score = 119 bits (60), Expect = 3e-025
Identities = 174/212 (82%)
Strand = Plus / Minus
Query: 775 aggagtattccgccaactatagggaccagcgaagcccatatgcgccactcgaaatgcttg 834
||||||||||| ||||| || || | || |||||||| || ||||| || ||||| ||
Sbjct: 436 aggagtattcctccaacaatcggtatcaaagaagcccaaattcgccaatcaaaatgtttt 377
Query: 835 ctccagactagccactgcagaataactgtggttgcaggagtgaaagatttgattgtctgc 894
||||| ||||||||||||| || |||||||||||||||||| || || || ||||| |||
Sbjct: 376 ctccaaactagccactgcaaaacaactgtggttgcaggagtaaatgactttattgtttgc 317
Query: 895 atgaaggagactgggatgtagcgcaagctgacatttcccagcacaatgtttatgcagaag 954
|| || || ||||| ||| | || ||||| ||||| |||||||| ||||| ||||| ||
Sbjct: 316 ataaatgaaactggaatgaaacgtaagctcacattccccagcactatgttgatgcaaaac 257
Query: 955 acgaaggacattggaaatatccttttccagcg 986
|| || ||||| |||||||||||| |||||||
Sbjct: 256 acaaacgacatgggaaatatccttctccagcg 225
Score = 103 bits (52), Expect = 2e-020
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| |||||||| ||||| || || || | |||||||||||||||
Sbjct: 166 gctccaatggatgagcatatgaagtgaacgcaagatactgttaatgggaacttgaaatcc 107
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
| ||||||||||||||| ||||||||||| || |||||||| || || ||||||||
Sbjct: 106 aatttctggaagatccatttgttcatgataataacagtgacattaaaaccccacca 51
>gb|CV131843.1|CV131843 L3P09e11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 771
Score = 115 bits (58), Expect = 4e-024
Identities = 106/122 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| ||||| |||||||| || || || || || ||||||||||||
Sbjct: 507 gctccaatggatgagcatatgaaatggacgcaagatactgttagcggaaacttgaaatcc 448
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 447 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 388
Query: 1165 ag 1166
||
Sbjct: 387 ag 386
Score = 97.6 bits (49), Expect = 1e-018
Identities = 160/197 (81%)
Strand = Plus / Minus
Query: 805 gaagcccatatgcgccactcgaaatgcttgctccagactagccactgcagaataactgtg 864
|||||||| || ||||| || |||| || ||||| ||||||||||| | || |||||||
Sbjct: 747 gaagcccaaattcgccagtcaaaatattttctccaaactagccactgtaaaacaactgtg 688
Query: 865 gttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgcaagctg 924
||||||||||| || || || ||||| ||||| || || ||||| ||| | || |||||
Sbjct: 687 gttgcaggagtaaatgactttattgtttgcataaacgaaactggaatgaatcgtaagctc 628
Query: 925 acatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatccttttccag 984
||||| |||||||| ||||| ||||| || || || ||||| |||||||||||| ||||
Sbjct: 627 acattccccagcactatgttgatgcaaaacacaaacgacatgggaaatatccttcgccag 568
Query: 985 cggtcctccggttcaac 1001
|| || || ||||||||
Sbjct: 567 cgatcttcaggttcaac 551
>gb|BU827286.1|BU827286 UK130TG10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 548
Score = 113 bits (57), Expect = 2e-023
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| |||||||||| ||| || || | || || ||||||||||||
Sbjct: 360 gctccaatggatgagcatatgaagtggatgcaagatactgatagcggaaacttgaaatcc 301
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 300 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 241
Query: 1165 aggatggcgagca 1177
|| || |||||||
Sbjct: 240 agaatagcgagca 228
Score = 87.7 bits (44), Expect = 1e-015
Identities = 119/144 (82%)
Strand = Plus / Minus
Query: 858 aactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcg 917
|||||||||||||||||| || || || ||||||||||| || || ||||| ||| | ||
Sbjct: 547 aactgtggttgcaggagtaaatgactttattgtctgcataaacgaaactggaatgaaacg 488
Query: 918 caagctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatcct 977
||||| ||||| |||||||| ||||| ||||| || || || ||||| |||||||||||
Sbjct: 487 taagctcacattccccagcactatgttgatgcaaaacacaaacgacatgggaaatatcct 428
Query: 978 tttccagcggtcctccggttcaac 1001
| |||||| || || ||||||||
Sbjct: 427 tcgccagcgatcttcaggttcaac 404
>gb|BU894196.1|BU894196 X004C07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 646
Score = 113 bits (57), Expect = 2e-023
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| |||||||||| ||| || || | || || ||||||||||||
Sbjct: 476 gctccaatggatgagcatatgaagtggatgcaagatactgatagcggaaacttgaaatcc 417
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 416 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 357
Query: 1165 aggatggcgagca 1177
|| || |||||||
Sbjct: 356 agaatagcgagca 344
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 886 attgtctgcatgaaggagactgggatgtagcgcaagctgacatttcccagcacaatgttt 945
||||||||||| || || ||||| ||| | || ||||| ||||| |||||||| |||||
Sbjct: 635 attgtctgcataaacgaaactggaatgaaacgtaagctcacattccccagcactatgttg 576
Query: 946 atgcagaagacgaaggacattggaaatatccttttccagcggtcctccggttcaac 1001
||||| || || || ||||| |||||||||||| |||||| || || ||||||||
Sbjct: 575 atgcaaaacacaaacgacatgggaaatatccttcgccagcgatcttcaggttcaac 520
>gb|DT495069.1|DT495069 WS0112.BR_E17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_E17
5', mRNA sequence
Length = 629
Score = 113 bits (57), Expect = 2e-023
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| ||||| |||| ||| || || || || || ||||||||||||
Sbjct: 589 gctccaatggatgagcatatgaaatggatgcaagatactgttagcggaaacttgaaatcc 530
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 529 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 470
Query: 1165 aggatggcgagca 1177
|| || |||||||
Sbjct: 469 agaatagcgagca 457
>gb|CN520985.1|CN520985 GQ0108.B3_E09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_E09 5', mRNA sequence
Length = 778
Score = 107 bits (54), Expect = 1e-021
Identities = 141/170 (82%)
Strand = Plus / Minus
Query: 817 cgccactcgaaatgcttgctccagactagccactgcagaataactgtggttgcaggagtg 876
||||| || ||||| || ||||| ||||||||||||| || ||||||||||||||||||
Sbjct: 717 cgccaatcaaaatgttttctccaaactagccactgcaaaacaactgtggttgcaggagta 658
Query: 877 aaagatttgattgtctgcatgaaggagactgggatgtagcgcaagctgacatttcccagc 936
|| || || ||||| ||||| || || ||||| ||| | || ||||| ||||| ||||||
Sbjct: 657 aatgactttattgtttgcataaatgaaactggaatgaaacgtaagctcacattccccagc 598
Query: 937 acaatgtttatgcagaagacgaaggacattggaaatatccttttccagcg 986
|| ||||| ||||| || || || ||||| |||||||||||| |||||||
Sbjct: 597 actatgttgatgcaaaacacaaatgacatgggaaatatccttctccagcg 548
Score = 103 bits (52), Expect = 2e-020
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| |||||||| ||||| || || || | |||||||||||||||
Sbjct: 489 gctccaatggatgagcatatgaagtgaacgcaagatactgttaacgggaacttgaaatcc 430
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
| ||||||||||||||| ||||||||||| || |||||||| || || ||||||||
Sbjct: 429 aatttctggaagatccatttgttcatgataataacagtgacattaaaaccccacca 374
>gb|CN523910.1|CN523910 GQ015M10.T3_G01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_G01 5', mRNA sequence
Length = 843
Score = 107 bits (54), Expect = 1e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| ||||| |||| ||| || || || || || ||||||||||||
Sbjct: 490 gctccaatggatgagcatatgaaatggatgcaagatactgttagcggaaacttgaaatcc 431
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 430 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 371
Query: 1165 ag 1166
||
Sbjct: 370 ag 369
Score = 97.6 bits (49), Expect = 1e-018
Identities = 160/197 (81%)
Strand = Plus / Minus
Query: 805 gaagcccatatgcgccactcgaaatgcttgctccagactagccactgcagaataactgtg 864
|||||||| || ||||| || |||| || ||||| ||||||||||| | || |||||||
Sbjct: 730 gaagcccaaattcgccagtcaaaatattttctccaaactagccactgtaaaacaactgtg 671
Query: 865 gttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgcaagctg 924
||||||||||| || || || ||||| ||||| || || ||||| ||| | || |||||
Sbjct: 670 gttgcaggagtaaatgactttattgtttgcataaacgaaactggaatgaatcgtaagctc 611
Query: 925 acatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatccttttccag 984
||||| |||||||| ||||| ||||| || || || ||||| |||||||||||| ||||
Sbjct: 610 acattccccagcactatgttgatgcaaaacacaaacgacatgggaaatatccttcgccag 551
Query: 985 cggtcctccggttcaac 1001
|| || || ||||||||
Sbjct: 550 cgatcttcaggttcaac 534
>gb|CV131588.1|CV131588 L3P01c10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 729
Score = 107 bits (54), Expect = 1e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| ||||| |||| ||| || || || || || ||||||||||||
Sbjct: 482 gctccaatggatgagcatatgaaatggatgcaagatactgttagcggaaacttgaaatcc 423
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 422 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 363
Query: 1165 ag 1166
||
Sbjct: 362 ag 361
Score = 97.6 bits (49), Expect = 1e-018
Identities = 160/197 (81%)
Strand = Plus / Minus
Query: 805 gaagcccatatgcgccactcgaaatgcttgctccagactagccactgcagaataactgtg 864
|||||||| || ||||| || |||| || ||||| ||||||||||| | || |||||||
Sbjct: 722 gaagcccaaattcgccagtcaaaatattttctccaaactagccactgtaaaacaactgtg 663
Query: 865 gttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatgtagcgcaagctg 924
||||||||||| || || || ||||| ||||| || || ||||| ||| | || |||||
Sbjct: 662 gttgcaggagtaaatgactttattgtttgcataaacgaaactggaatgaatcgtaagctc 603
Query: 925 acatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatccttttccag 984
||||| |||||||| ||||| ||||| || || || ||||| |||||||||||| ||||
Sbjct: 602 acattccccagcactatgttgatgcaaaacacaaacgacatgggaaatatccttcgccag 543
Query: 985 cggtcctccggttcaac 1001
|| || || ||||||||
Sbjct: 542 cgatcttcaggttcaac 526
>gb|CX183937.1|CX183937 F11_45-59_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 555
Score = 107 bits (54), Expect = 1e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| ||||| |||| ||| || || || || || ||||||||||||
Sbjct: 430 gctccaatggatgagcatatgaaatggatgcaagatactgttagcggaaacttgaaatcc 371
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 370 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 311
Query: 1165 ag 1166
||
Sbjct: 310 ag 309
Score = 52.0 bits (26), Expect = 5e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 920 agctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatccttt 979
|||| ||||| |||||||| ||||| ||||| || || || ||||| ||||||||||||
Sbjct: 555 agctcacattccccagcactatgttgatgcaaaacacaaacgacatgggaaatatccttc 496
Query: 980 tccagcggtcctccggttcaac 1001
|||||| || || ||||||||
Sbjct: 495 gccagcgatcttcaggttcaac 474
>gb|CX184305.1|CX184305 H04_45-41_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 664
Score = 107 bits (54), Expect = 1e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| ||||| |||| ||| || || || || || ||||||||||||
Sbjct: 488 gctccaatggatgagcatatgaaatggatgcaagatactgttagcggaaacttgaaatcc 429
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccaccactgg 1164
||||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||
Sbjct: 428 agtttctggaagatccatttgttcatgataataacagtaacattgaaaccccaccattgg 369
Query: 1165 ag 1166
||
Sbjct: 368 ag 367
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 919 aagctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatcctt 978
||||| ||||| |||||||| ||||| ||||| || || || ||||| ||||||||||||
Sbjct: 614 aagctcacattccccagcactatgttgatgcaaaacacaaacgacatgggaaatatcctt 555
Query: 979 ttccagcggtcctccggttcaac 1001
|||||| || || ||||||||
Sbjct: 554 cgccagcgatcttcaggttcaac 532
>gb|CK114284.1|CK114284 X005F01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X005F01 5', mRNA sequence
Length = 671
Score = 103 bits (52), Expect = 2e-020
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 1045 gctccaatggaagagcagatgaagtggacgcaggacacggtgagagggaacttgaaatcc 1104
||||||||||| ||||| |||||||| ||||| || || || | |||||||||||||||
Sbjct: 519 gctccaatggatgagcatatgaagtgaacgcaagatactgttaatgggaacttgaaatcc 460
Query: 1105 agtttctggaagatccacttgttcatgatgatgacagtgacgttgaagccccacca 1160
| ||||||||||||||| ||||||||||| || |||||||| || || ||||||||
Sbjct: 459 aatttctggaagatccatttgttcatgataataacagtgacattaaaaccccacca 404
Score = 56.0 bits (28), Expect = 3e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 919 aagctgacatttcccagcacaatgtttatgcagaagacgaaggacattggaaatatcctt 978
||||| ||||| |||||||| ||||| ||||| || || || ||||| ||||||||||||
Sbjct: 645 aagctcacattccccagcactatgttgatgcaaaacacaaacgacatgggaaatatcctt 586
Query: 979 ttccagcg 986
|||||||
Sbjct: 585 ctccagcg 578
>gb|BP925815.1|BP925815 BP925815 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-051_A19.f 5', mRNA sequence
Length = 295
Score = 91.7 bits (46), Expect = 6e-017
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 1093 aacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttgaag 1152
||||||||||||||||||||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 258 aacttgaaatccagtttctggaagatccatttgttcatgataataacagtaacattgaaa 199
Query: 1153 ccccaccactggag 1166
|||||||| |||||
Sbjct: 198 ccccaccattggag 185
>gb|BU826807.1|BU826807 UK125TA08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 519
Score = 79.8 bits (40), Expect = 2e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 1090 gggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacgttg 1149
|||||||||| ||||| ||||||||||||||| ||||||||||| || |||||||| ||
Sbjct: 507 gggaacttganatccaatttctggaagatccatttgttcatgataataacagtgacatta 448
Query: 1150 aagccccacca 1160
|| ||||||||
Sbjct: 447 aaaccccacca 437
>gb|BU894200.1|BU894200 X004C12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 685
Score = 75.8 bits (38), Expect = 4e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||| ||||| ||||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 73 atcatggttgcaaaaggtgccatgtagtacacagtgtttatgctgtcaaatttatatcca 14
Query: 670 tg 671
||
Sbjct: 13 tg 12
Score = 42.1 bits (21), Expect = 0.052
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 448 actgctgttgttgaatggatgacgtagaagatggagaagtt 488
||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 235 actgcagttgtggaatgaattacgtaaaagatggagaagtt 195
>gb|AI165052.1|AI165052 A074p26u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 297
Score = 63.9 bits (32), Expect = 1e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcca 669
|||||||| |||| ||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct: 274 atcatggttgcaagaggtgccatgtagtacacggtgtttatgctgtcaaatttatatccg 215
Query: 670 tggagtagggactctgccaagatggtctttgtagacgtagccaggcagccaaccatggca 729
|| || || || ||||| | || |||||||| || ||||||| || |||| | ||||
Sbjct: 214 tgcagcagagattctgcaagaatagtctttgttgaagtagccaaacatccaaataaggca 155
Query: 730 gcacagaaaccgaaaatgttgaagctaagctc 761
||||| || ||||| || || || ||||||||
Sbjct: 154 gcacaaaatccgaacatattaaaactaagctc 123
>gb|CK090457.1|CK090457 F006P41.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F006P41 3', mRNA sequence
Length = 892
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcc 668
|||||||| |||| ||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct: 647 atcatggttgcaagaggtgccatgtagtacacggtgtttatgctgtcaaatttatatcc 705
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 448 actgctgttgttgaatggatgacgtagaagatggagaagttaag 491
||||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 485 actgcagttgtggaatgaatcacataaaagatggagaagttaag 528
>gb|CV248062.1|CV248062 WS0112.B21_E17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_E17 3', mRNA sequence
Length = 762
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgctgtcaaacttgtatcc 668
|||||||| |||| ||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct: 600 atcatggttgcaagaggtgccatgtagtacacggtgtttatgctgtcaaatttatatcc 658
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 448 actgctgttgttgaatggatgacgtagaagatggagaagttaag 491
||||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 438 actgcagttgtggaatgaatcacataaaagatggagaagttaag 481
>gb|DT478203.1|DT478203 WS02522.BR_C04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_C04 5', mRNA sequence
Length = 707
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgtt 647
|||||||| ||||| ||||||||||||||||| |||||
Sbjct: 41 atcatggttgcaaaaggtgccatgtagtacacagtgtt 4
>gb|DT483271.1|DT483271 WS02522.B21_C04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_C04 3', mRNA sequence
Length = 705
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgtt 647
|||||||| ||||| ||||||||||||||||| |||||
Sbjct: 665 atcatggttgcaaaaggtgccatgtagtacacagtgtt 702
>gb|CX659701.1|CX659701 PO01012H10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01012H10 5', mRNA sequence
Length = 675
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 610 atcatggtggcaaagggtgccatgtagtacaccgtgttaatgct 653
|||||||| |||| ||||||||||||||||| ||||| |||||
Sbjct: 632 atcatggttgcaagaggtgccatgtagtacacggtgtttatgct 675
>gb|DT509687.1|DT509687 WS02424.BR_G19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_G19 5', mRNA sequence
Length = 658
Score = 44.1 bits (22), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 610 atcatggtggcaaagggtgccatgtagtac 639
|||||||| ||||| |||||||||||||||
Sbjct: 31 atcatggttgcaaaaggtgccatgtagtac 2
>gb|DT514293.1|DT514293 WS02424.B21_G19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_G19 3', mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 610 atcatggtggcaaagggtgccatgtagtac 639
|||||||| ||||| |||||||||||||||
Sbjct: 626 atcatggttgcaaaaggtgccatgtagtac 655
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,272
Number of Sequences: 369679
Number of extensions: 148272
Number of successful extensions: 40412
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40358
Number of HSP's gapped (non-prelim): 52
length of query: 1279
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1260
effective length of database: 196,384,763
effective search space: 247444801380
effective search space used: 247444801380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)