BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455820.2.1
(1312 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library... 72 6e-011
>gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 559
Score = 71.9 bits (36), Expect = 6e-011
Identities = 219/280 (78%)
Strand = Plus / Minus
Query: 509 ggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacacca 568
||||||| ||||| ||||| || | || |||||||||||||||| ||||| | ||||
Sbjct: 357 ggctccaggggaaatgataaccacaatgtgcttcaactgtctccaggacccttagtacca 298
Query: 569 tccacagccacagggtgaagagatgagggccagtaagagcaggaccaacaactggggcga 628
|||| | ||||| || | ||||| ||||| || | ||||||||||||| | || |
Sbjct: 297 tccataaccacaaagttaccagatgggggcctgtgatggcaggaccaacaatagtagcaa 238
Query: 629 atcccaggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtgg 688
| || ||||||| || ||||| ||||| |||||||| || ||||| ||||| ||||| |
Sbjct: 237 aaccaaggaacagtatctcagcagggtgagcatattcggaagttaatccaaatggtgtag 178
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
| || ||||| |||| ||||| || || ||||| |||||||| ||||| || || ||
Sbjct: 177 catattcatgatggatactgtgcacatgcttgtacagccattttgtatgtaagaaccggt 118
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaa 788
| |||||||||||||||||||| || |||| ||||||||
Sbjct: 117 gtccccaatagaatataaaatcttccaggatgaagtagaa 78
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,524
Number of Sequences: 369679
Number of extensions: 162524
Number of successful extensions: 43194
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43189
Number of HSP's gapped (non-prelim): 5
length of query: 1312
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1293
effective length of database: 196,384,763
effective search space: 253925498559
effective search space used: 253925498559
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)