BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440773.2.1
(1437 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU870199.1|BU870199 Q009K02 Populus flower cDNA library ... 56 4e-006
gb|DN496718.1|DN496718 Q009I10.5pR Populus dormant bud cDNA... 56 4e-006
gb|DT480936.1|DT480936 WS02530.BR_G09 PT-MB-N-A-15 Populus ... 56 4e-006
gb|DT486230.1|DT486230 WS02530.B21_G09 PT-MB-N-A-15 Populus... 56 4e-006
gb|CK111134.1|CK111134 Q009F01 Populus dormant bud cDNA lib... 52 6e-005
gb|DN498398.1|DN498398 S023D04.5pR Populus imbibed seed cDN... 50 2e-004
gb|BU816161.1|BU816161 N061D02 Populus bark cDNA library Po... 44 0.015
gb|DN486016.1|DN486016 N061D02.3pR Populus bark cDNA librar... 44 0.015
gb|DN488688.1|DN488688 S023D04.3pR Populus imbibed seed cDN... 44 0.015
gb|DN495565.1|DN495565 N061D02.5pR Populus bark cDNA librar... 44 0.015
gb|DT469976.1|DT469976 WS01919.C21_H24 PT-DX-N-A-10 Populus... 44 0.015
gb|DT505695.1|DT505695 WS01811.C21_J20 PTxD-IL-N-A-9 Populu... 44 0.015
gb|BI128185.1|BI128185 G072P26Y Populus cambium cDNA librar... 40 0.23
gb|BI128476.1|BI128476 G076P38Y Populus cambium cDNA librar... 40 0.23
gb|BU831426.1|BU831426 T021D02 Populus apical shoot cDNA li... 40 0.23
gb|BU836314.1|BU836314 T085C12 Populus apical shoot cDNA li... 40 0.23
gb|CK096293.1|CK096293 UB10CPA10.3pR Populus active cambium... 40 0.23
gb|CK102291.1|CK102291 G072P26.5pR Populus tension wood cDN... 40 0.23
gb|CK102401.1|CK102401 G076P38.5pR Populus tension wood cDN... 40 0.23
gb|CK106126.1|CK106126 UB10CPA10.5pR Populus active cambium... 40 0.23
gb|CN524344.1|CN524344 GQ015M15.T3_C01 GQ015 Populus tricho... 40 0.23
gb|DT518844.1|DT518844 WS02439.B21_H10 PTxD-ICC-N-A-14 Popu... 40 0.23
>gb|BU870199.1|BU870199 Q009K02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 137
Score = 56.0 bits (28), Expect = 4e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgataca 421
||||| ||||| ||||| || || ||||||||||| |||||||| ||||| |||||||||
Sbjct: 67 tgtggtgtcaagatgggtgaatatttttgtgatatttgcaaattctatgacgatgataca 126
>gb|DN496718.1|DN496718 Q009I10.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q009I10 5', mRNA sequence
Length = 794
Score = 56.0 bits (28), Expect = 4e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgataca 421
||||| ||||| ||||| || || ||||||||||| |||||||| ||||| |||||||||
Sbjct: 75 tgtggtgtcaagatgggtgaatatttttgtgatatttgcaaattctatgacgatgataca 134
>gb|DT480936.1|DT480936 WS02530.BR_G09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_G09 5', mRNA sequence
Length = 676
Score = 56.0 bits (28), Expect = 4e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgataca 421
||||| ||||| ||||| || || ||||||||||| |||||||| ||||| |||||||||
Sbjct: 269 tgtggtgtcaagatgggtgaatatttttgtgatatttgcaaattctatgacgatgataca 328
>gb|DT486230.1|DT486230 WS02530.B21_G09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_G09 3', mRNA sequence
Length = 675
Score = 56.0 bits (28), Expect = 4e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgataca 421
||||| ||||| ||||| || || ||||||||||| |||||||| ||||| |||||||||
Sbjct: 407 tgtggtgtcaagatgggtgaatatttttgtgatatttgcaaattctatgacgatgataca 348
>gb|CK111134.1|CK111134 Q009F01 Populus dormant bud cDNA library Populus tremula cDNA clone
Q009F01 5', mRNA sequence
Length = 147
Score = 52.0 bits (26), Expect = 6e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgataca 421
||||| ||||| ||||| || || ||||||||||| ||||||| ||||| |||||||||
Sbjct: 75 tgtggtgtcaagatgggtgaatatttttgtgatattcgcaaattctatgacgatgataca 134
Query: 422 gacaaa 427
| ||||
Sbjct: 135 ggcaaa 140
>gb|DN498398.1|DN498398 S023D04.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S023D04 5', mRNA sequence
Length = 787
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 541 gtgtgtggagaactcaatgaggcagaattgcccaatctgttatgagtatctatttga 597
||||||||||||||| ||| | || ||||||| || |||||||||||| |||||||
Sbjct: 520 gtgtgtggagaactctatgcgtcatcattgccccatatgttatgagtatttatttga 576
>gb|BU816161.1|BU816161 N061D02 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 854 tgcagccactgcagatcgtacaacacccgaacaa 887
||||||||||||| ||| ||||| ||||||||||
Sbjct: 283 tgcagccactgcaaatcatacaatacccgaacaa 316
>gb|DN486016.1|DN486016 N061D02.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N061D02 3', mRNA sequence
Length = 548
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 854 tgcagccactgcagatcgtacaacacccgaacaa 887
||||||||||||| ||| ||||| ||||||||||
Sbjct: 276 tgcagccactgcaaatcatacaatacccgaacaa 243
>gb|DN488688.1|DN488688 S023D04.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S023D04 3', mRNA sequence
Length = 442
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 854 tgcagccactgcagatcgtacaacacccgaacaa 887
||||||||||||| ||| ||||| ||||||||||
Sbjct: 329 tgcagccactgcaaatcatacaatacccgaacaa 296
>gb|DN495565.1|DN495565 N061D02.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N061D02 5', mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 854 tgcagccactgcagatcgtacaacacccgaacaa 887
||||||||||||| ||| ||||| ||||||||||
Sbjct: 272 tgcagccactgcaaatcatacaatacccgaacaa 305
>gb|DT469976.1|DT469976 WS01919.C21_H24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_H24 3', mRNA sequence
Length = 383
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 854 tgcagccactgcagatcgtacaacacccgaacaa 887
||||||||||||| ||| ||||| ||||||||||
Sbjct: 355 tgcagccactgcaaatcatacaatacccgaacaa 322
>gb|DT505695.1|DT505695 WS01811.C21_J20 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01811_J20 3', mRNA sequence
Length = 800
Score = 44.1 bits (22), Expect = 0.015
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 369 tcaatatgggagagtacttttgtgatatatgcaaattttatgatgatgat 418
|||| ||||| || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 800 tcaagatgggtgaatatttttgtgatatttgcaaattctatgacgatgat 751
>gb|BI128185.1|BI128185 G072P26Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 655 tgaagaaatggtggcgcata 674
||||||||||||||||||||
Sbjct: 273 tgaagaaatggtggcgcata 254
>gb|BI128476.1|BI128476 G076P38Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 655 tgaagaaatggtggcgcata 674
||||||||||||||||||||
Sbjct: 183 tgaagaaatggtggcgcata 164
>gb|BU831426.1|BU831426 T021D02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 655 tgaagaaatggtggcgcata 674
||||||||||||||||||||
Sbjct: 200 tgaagaaatggtggcgcata 181
>gb|BU836314.1|BU836314 T085C12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 655 tgaagaaatggtggcgcata 674
||||||||||||||||||||
Sbjct: 196 tgaagaaatggtggcgcata 177
>gb|CK096293.1|CK096293 UB10CPA10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB10CPA10 3', mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 cgccgtcgccgccgccgccg 70
||||||||||||||||||||
Sbjct: 298 cgccgtcgccgccgccgccg 279
>gb|CK102291.1|CK102291 G072P26.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P26 5', mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 655 tgaagaaatggtggcgcata 674
||||||||||||||||||||
Sbjct: 256 tgaagaaatggtggcgcata 237
>gb|CK102401.1|CK102401 G076P38.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G076P38 5', mRNA sequence
Length = 529
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 655 tgaagaaatggtggcgcata 674
||||||||||||||||||||
Sbjct: 183 tgaagaaatggtggcgcata 164
>gb|CK106126.1|CK106126 UB10CPA10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB10CPA10 5', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 cgccgtcgccgccgccgccg 70
||||||||||||||||||||
Sbjct: 550 cgccgtcgccgccgccgccg 569
>gb|CN524344.1|CN524344 GQ015M15.T3_C01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M15_C01 5', mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 655 tgaagaaatggtggcgcata 674
||||||||||||||||||||
Sbjct: 204 tgaagaaatggtggcgcata 185
>gb|DT518844.1|DT518844 WS02439.B21_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02439_H10 3', mRNA sequence
Length = 941
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 353 tgcataagctgtggagtcaatatg 376
||||||||||||| ||||||||||
Sbjct: 554 tgcataagctgtgtagtcaatatg 577
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,949
Number of Sequences: 369679
Number of extensions: 160949
Number of successful extensions: 44832
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44804
Number of HSP's gapped (non-prelim): 28
length of query: 1437
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1418
effective length of database: 196,384,763
effective search space: 278473593934
effective search space used: 278473593934
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)