BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN609829.1|DN609829 EST962879 Subtracted pine embryo lib... 34 4.0
gb|AF027337.1|AF027337 Pinus taeda NADPH:protochlorophyllid... 34 4.0
>gb|DN609829.1|DN609829 EST962879 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAI03, mRNA sequence
Length = 927
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 359 aagagctttgaaagaat 375
|||||||||||||||||
Sbjct: 270 aagagctttgaaagaat 254
>gb|AF027337.1|AF027337 Pinus taeda NADPH:protochlorophyllide oxidoreductase (por)
pseudogene, partial sequence
Length = 1653
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 34 aaattctgtatagtttc 50
|||||||||||||||||
Sbjct: 1405 aaattctgtatagtttc 1389
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,448
Number of Sequences: 355925
Number of extensions: 41448
Number of successful extensions: 14704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14702
Number of HSP's gapped (non-prelim): 2
length of query: 394
length of database: 217,277,237
effective HSP length: 18
effective length of query: 376
effective length of database: 210,870,587
effective search space: 79287340712
effective search space used: 79287340712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)