BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF399782.1|CF399782 RTWW1_1_E08.b1_A015 Well-watered lob... 38 0.31
>gb|CF399782.1|CF399782 RTWW1_1_E08.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_1_E08_A015 3', mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 296 ttattcttattcttcttct 314
|||||||||||||||||||
Sbjct: 476 ttattcttattcttcttct 458
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,909
Number of Sequences: 355925
Number of extensions: 51909
Number of successful extensions: 13668
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13667
Number of HSP's gapped (non-prelim): 1
length of query: 466
length of database: 217,277,237
effective HSP length: 19
effective length of query: 447
effective length of database: 210,514,662
effective search space: 94100053914
effective search space used: 94100053914
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)