BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3866402.2.1
         (406 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX678600.1|BX678600  BX678600 RS Pinus pinaster cDNA clon...    40   0.068
gb|BX678794.1|BX678794  BX678794 RS Pinus pinaster cDNA clon...    40   0.068
gb|CO158939.1|CO158939  FLD1_10_F07.b1_A029 Root flooded Pin...    40   0.068
gb|CO167598.1|CO167598  FLD1_70_A08.b1_A029 Root flooded Pin...    40   0.068
gb|CO167675.1|CO167675  FLD1_70_A08.g1_A029 Root flooded Pin...    40   0.068
gb|DR071603.1|DR071603  RTDK1_21_A05.b1_A029 Roots, dark Pin...    40   0.068
gb|DR386010.1|DR386010  RTHG1_12_G05.b1_A029 Roots plus adde...    40   0.068
gb|DR386081.1|DR386081  RTHG1_12_G05.g1_A029 Roots plus adde...    40   0.068

>gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clone RS11G06, mRNA sequence
          Length = 551

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 293 ctggaactccgatacaaatggaaaccaagcca 262



>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
          Length = 488

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 301 ctggaactccgatacaaatggaaaccaagcca 270



>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_10_F07_A029 3', mRNA sequence
          Length = 760

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 198 ctggaactccgatacaaatggaaaccaagcca 167



>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_70_A08_A029 3', mRNA sequence
          Length = 820

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 260 ctggaactccgatacaaatggaaaccaagcca 229



>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_70_A08_A029 5', mRNA sequence
          Length = 501

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 268 ctggaactccgatacaaatggaaaccaagcca 237



>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_21_A05_A029 3', mRNA sequence
          Length = 769

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 330 ctggaactccgatacaaatggaaaccaagcca 299



>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_12_G05_A029 3', mRNA sequence
          Length = 806

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 183 ctggaactccgatacaaatggaaaccaagcca 152



>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_12_G05_A029 5', mRNA sequence
          Length = 804

 Score = 40.1 bits (20), Expect = 0.068
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
           |||||||||||| |||||||| ||||| ||||
Sbjct: 327 ctggaactccgatacaaatggaaaccaagcca 296



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,019
Number of Sequences: 355925
Number of extensions: 42019
Number of successful extensions: 10893
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10885
Number of HSP's gapped (non-prelim): 8
length of query: 406
length of database: 217,277,237
effective HSP length: 18
effective length of query: 388
effective length of database: 210,870,587
effective search space: 81817787756
effective search space used: 81817787756
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)