BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204472.2.1
(757 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF388888.1|CF388888 RTDR2_16_E10.b1_A021 Loblolly pine r... 46 0.002
gb|CF391716.1|CF391716 RTDR3_11_E09.g1_A022 Loblolly pine r... 46 0.002
gb|CF473607.1|CF473607 RTWW2_3_E07.g1_A021 Well-watered lob... 46 0.002
gb|CF670338.1|CF670338 RTCNT1_49_C11.g1_A029 Root control P... 46 0.002
gb|CO165955.1|CO165955 FLD1_58_G05.b1_A029 Root flooded Pin... 46 0.002
gb|CO174759.1|CO174759 NDL1_46_C11.b1_A029 Needles control ... 46 0.002
gb|CO198305.1|CO198305 GEO1_12_E11.g1_A029 Root gravitropis... 46 0.002
gb|CO200545.1|CO200545 GEO2_8_C07.b1_A032 Root gravitropism... 46 0.002
gb|CO200627.1|CO200627 GEO2_8_C07.g1_A032 Root gravitropism... 46 0.002
gb|CO367672.1|CO367672 RTK1_35_F12.g1_A029 Roots minus pota... 46 0.002
gb|DR069069.1|DR069069 RTDK1_4_E04.g1_A029 Roots, dark Pinu... 46 0.002
gb|DR162321.1|DR162321 RTFE1_17_D04.b1_A029 Roots minus iro... 46 0.002
gb|DR689329.1|DR689329 EST1079415 Normalized pine embryo li... 46 0.002
gb|DT635662.1|DT635662 EST1150593 Normalized pine embryo li... 46 0.002
gb|AL750678.1|AL750678 AL750678 RN Pinus pinaster cDNA clon... 44 0.008
gb|BX251529.1|BX251529 BX251529 Pinus pinaster differenciat... 44 0.008
gb|AW985199.1|AW985199 NXNV_132_D01_F Nsf Xylem Normal wood... 44 0.008
gb|BE209174.1|BE209174 NXNV_164_H08_F Nsf Xylem Normal wood... 44 0.008
gb|BG275452.1|BG275452 NXSI_139_A02_F NXSI (Nsf Xylem Side ... 44 0.008
gb|CF389327.1|CF389327 RTDR2_9_B04.g1_A021 Loblolly pine ro... 44 0.008
gb|CF391895.1|CF391895 RTDR3_10_A11.g1_A022 Loblolly pine r... 44 0.008
gb|CF392100.1|CF392100 RTDR3_12_C12.g1_A022 Loblolly pine r... 44 0.008
gb|CF393529.1|CF393529 RTDR3_13_A10.g1_A022 Loblolly pine r... 44 0.008
gb|CF475842.1|CF475842 RTWW2_15_D08.g1_A021 Well-watered lo... 44 0.008
gb|CF478518.1|CF478518 RTWW3_20_G08.g1_A022 Well-watered lo... 44 0.008
gb|CF666139.1|CF666139 RTCNT1_21_C11.b1_A029 Root control P... 44 0.008
gb|CF666201.1|CF666201 RTCNT1_21_C11.g1_A029 Root control P... 44 0.008
gb|CF671241.1|CF671241 RTCNT1_55_F04.g1_A029 Root control P... 44 0.008
gb|CR392952.1|CR392952 CR392952 RN Pinus pinaster cDNA clon... 44 0.008
gb|CO166714.1|CO166714 FLD1_64_B02.b1_A029 Root flooded Pin... 44 0.008
gb|CO166785.1|CO166785 FLD1_64_B02.g1_A029 Root flooded Pin... 44 0.008
gb|CO198162.1|CO198162 GEO1_11_E05.g1_A029 Root gravitropis... 44 0.008
gb|CO200212.1|CO200212 GEO2_6_C09.b1_A032 Root gravitropism... 44 0.008
gb|CO200294.1|CO200294 GEO2_6_C09.g1_A032 Root gravitropism... 44 0.008
gb|CO362254.1|CO362254 RTK1_2_H07.b1_A029 Roots minus potas... 44 0.008
gb|CO364445.1|CO364445 RTK1_15_F04.g1_A029 Roots minus pota... 44 0.008
gb|CV034171.1|CV034171 RTNACL1_39_E01.b1_A029 Roots plus ad... 44 0.008
gb|CV034467.1|CV034467 RTNACL1_9_D03.b1_A029 Roots plus add... 44 0.008
gb|CV034476.1|CV034476 RTNACL1_9_E03.b1_A029 Roots plus add... 44 0.008
gb|CV034483.1|CV034483 RTNACL1_9_F03.b1_A029 Roots plus add... 44 0.008
gb|CV034526.1|CV034526 RTNACL1_9_D03.g1_A029 Roots plus add... 44 0.008
gb|CV034533.1|CV034533 RTNACL1_9_E03.g1_A029 Roots plus add... 44 0.008
gb|CV034538.1|CV034538 RTNACL1_9_F03.g1_A029 Roots plus add... 44 0.008
gb|CV036423.1|CV036423 RTNACL1_59_D12.b1_A029 Roots plus ad... 44 0.008
gb|CV036496.1|CV036496 RTNACL1_59_D12.g1_A029 Roots plus ad... 44 0.008
gb|CX646397.1|CX646397 COLD1_9_D03.b1_A029 Root cold Pinus ... 44 0.008
gb|CX650736.1|CX650736 COLD1_47_F07.g1_A029 Root cold Pinus... 44 0.008
gb|CX712945.1|CX712945 RTPQ1_5_H08.g1_A032 Roots treated wi... 44 0.008
gb|CX713574.1|CX713574 RTPQ1_10_G07.g1_A032 Roots treated w... 44 0.008
gb|CX713838.1|CX713838 RTPQ1_13_G08.g1_A032 Roots treated w... 44 0.008
gb|CX713854.1|CX713854 RTPQ1_14_B11.b1_A032 Roots treated w... 44 0.008
gb|CX713889.1|CX713889 RTPQ1_14_B11.g1_A032 Roots treated w... 44 0.008
gb|DR011830.1|DR011830 HEAT1_8_E01.b1_A029 Root at 37 C for... 44 0.008
gb|DR018200.1|DR018200 STRS1_21_D01.b1_A034 Shoot tip pitch... 44 0.008
gb|DR025355.1|DR025355 STRS1_71_D08.b1_A034 Shoot tip pitch... 44 0.008
gb|DR025443.1|DR025443 STRS1_71_D08.g1_A034 Shoot tip pitch... 44 0.008
gb|DR025568.1|DR025568 STRS1_72_H11.b1_A034 Shoot tip pitch... 44 0.008
gb|DR025648.1|DR025648 STRS1_72_H11.g1_A034 Shoot tip pitch... 44 0.008
gb|DR047903.1|DR047903 RTBOR1_5_A01.g2_A029 Roots plus adde... 44 0.008
gb|DR049828.1|DR049828 RTBOR1_19_H02.b1_A029 Roots plus add... 44 0.008
gb|DR049906.1|DR049906 RTBOR1_19_H02.g1_A029 Roots plus add... 44 0.008
gb|DR055160.1|DR055160 RTCA1_22_A02.b1_A029 Roots minus cal... 44 0.008
gb|DR057908.1|DR057908 RTNIT1_8_C01.g1_A029 Roots minus nit... 44 0.008
gb|DR058450.1|DR058450 RTNIT1_11_G12.g1_A029 Roots minus ni... 44 0.008
gb|DR059730.1|DR059730 RTNIT1_19_A06.g1_A029 Roots minus ni... 44 0.008
gb|DR060778.1|DR060778 RTNIT1_30_A07.b1_A029 Roots minus ni... 44 0.008
gb|DR060854.1|DR060854 RTNIT1_30_A07.g1_A029 Roots minus ni... 44 0.008
gb|DR068744.1|DR068744 RTDK1_2_D09.g1_A029 Roots, dark Pinu... 44 0.008
gb|DR070047.1|DR070047 RTDK1_11_A07.b1_A029 Roots, dark Pin... 44 0.008
gb|DR070126.1|DR070126 RTDK1_11_A07.g1_A029 Roots, dark Pin... 44 0.008
gb|DR078685.1|DR078685 RTFEPL1_6_F01.b1_A029 Roots plus add... 44 0.008
gb|DR078768.1|DR078768 RTFEPL1_6_F01.g1_A029 Roots plus add... 44 0.008
gb|DR089369.1|DR089369 RTAL1_8_F03.b1_A029 Roots plus added... 44 0.008
gb|DR089447.1|DR089447 RTAL1_8_F03.g1_A029 Roots plus added... 44 0.008
gb|DR091978.1|DR091978 RTAL1_25_F03.b1_A029 Roots plus adde... 44 0.008
gb|DR092064.1|DR092064 RTAL1_26_C05.b1_A029 Roots plus adde... 44 0.008
gb|DR095098.1|DR095098 STRR1_18_F07.g1_A033 Stem Response R... 44 0.008
gb|DR096894.1|DR096894 STRR1_31_C12.b1_A033 Stem Response R... 44 0.008
gb|DR097030.1|DR097030 STRR1_32_B07.b1_A033 Stem Response R... 44 0.008
gb|DR097098.1|DR097098 STRR1_32_B07.g1_A033 Stem Response R... 44 0.008
gb|DR165423.1|DR165423 RTPHOS1_5_A12.b1_A029 Roots minus ph... 44 0.008
gb|DR165499.1|DR165499 RTPHOS1_5_A12.g1_A029 Roots minus ph... 44 0.008
gb|DR181814.1|DR181814 RTMNUT1_41_E04.b1_A029 Roots minus m... 44 0.008
gb|DR181900.1|DR181900 RTMNUT1_41_E04.g1_A029 Roots minus m... 44 0.008
dbj|BD236686.1| Materials and method for modification of pl... 44 0.008
dbj|BD236697.1| Materials and method for modification of pl... 44 0.008
dbj|BD236730.1| Materials and method for modification of pl... 44 0.008
dbj|BD236732.1| Materials and method for modification of pl... 44 0.008
dbj|BD236733.1| Materials and method for modification of pl... 44 0.008
dbj|BD236735.1| Materials and method for modification of pl... 44 0.008
dbj|BD236739.1| Materials and method for modification of pl... 44 0.008
dbj|BD236742.1| Materials and method for modification of pl... 44 0.008
dbj|BD236766.1| Materials and method for modification of pl... 44 0.008
dbj|BD236770.1| Materials and method for modification of pl... 44 0.008
gb|AA556959.1|AA556959 801 Loblolly pine C Pinus taeda cDNA... 42 0.032
gb|BE187389.1|BE187389 NXNV_163_D03_F Nsf Xylem Normal wood... 42 0.032
gb|CF389627.1|CF389627 RTDR2_8_B04.g1_A021 Loblolly pine ro... 42 0.032
gb|CF390680.1|CF390680 RTDR2_20_H12.g1_A021 Loblolly pine r... 42 0.032
gb|CF393544.1|CF393544 RTDR3_13_D04.g1_A022 Loblolly pine r... 42 0.032
gb|CO199990.1|CO199990 GEO2_4_F08.g1_A032 Root gravitropism... 42 0.032
gb|CV036105.1|CV036105 RTNACL1_44_E05.g1_A029 Roots plus ad... 42 0.032
gb|DR072057.1|DR072057 RTDK1_23_G04.g1_A029 Roots, dark Pin... 42 0.032
gb|DR167438.1|DR167438 RTPHOS1_18_G01.g1_A029 Roots minus p... 42 0.032
gb|AW056625.1|AW056625 ST53G08 Pine TriplEx shoot tip libra... 40 0.13
gb|BX249086.1|BX249086 BX249086 Pinus pinaster differenciat... 40 0.13
gb|BM158293.1|BM158293 NXLV_032_B01_F NXLV (Nsf Xylem Late ... 40 0.13
gb|CF400604.1|CF400604 RTWW1_6_E03.g1_A015 Well-watered lob... 40 0.13
gb|CF476502.1|CF476502 RTWW3_1_H04.g1_A022 Well-watered lob... 40 0.13
gb|CF664371.1|CF664371 RTCNT1_9_H05.b1_A029 Root control Pi... 40 0.13
gb|CF664459.1|CF664459 RTCNT1_9_H05.g1_A029 Root control Pi... 40 0.13
gb|CF668394.1|CF668394 RTCNT1_36_E12.b1_A029 Root control P... 40 0.13
gb|CO174270.1|CO174270 NDL1_42_H03.g1_A029 Needles control ... 40 0.13
gb|CO174357.1|CO174357 NDL1_43_B12.g1_A029 Needles control ... 40 0.13
gb|CO200992.1|CO200992 RTCNT2_3_A01.b1_A029 Root control 2 ... 40 0.13
gb|CO201067.1|CO201067 RTCNT2_3_A01.g1_A029 Root control 2 ... 40 0.13
gb|CO362633.1|CO362633 RTK1_4_G06.g1_A029 Roots minus potas... 40 0.13
gb|DR018025.1|DR018025 STRS1_20_B09.b1_A034 Shoot tip pitch... 40 0.13
gb|DR018105.1|DR018105 STRS1_20_B09.g1_A034 Shoot tip pitch... 40 0.13
gb|DR080738.1|DR080738 RTFEPL1_24_G11.g1_A029 Roots plus ad... 40 0.13
gb|DR110493.1|DR110493 RTS1_11_E09.b1_A029 Roots minus sulf... 40 0.13
dbj|BD236692.1| Materials and method for modification of pl... 40 0.13
dbj|BD236720.1| Materials and method for modification of pl... 40 0.13
>gb|CF388888.1|CF388888 RTDR2_16_E10.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_16_E10_A021 3', mRNA
sequence
Length = 594
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 184 gttccagaggatggagtaggtgtggaa 210
|||||||||||||||||| ||||||||
Sbjct: 209 gttccagaggatggagtaagtgtggaa 235
>gb|CF391716.1|CF391716 RTDR3_11_E09.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_11_E09_A022 5', mRNA
sequence
Length = 778
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 184 gttccagaggatggagtaggtgtggaa 210
|||||||||||||||||| ||||||||
Sbjct: 732 gttccagaggatggagtaagtgtggaa 758
>gb|CF473607.1|CF473607 RTWW2_3_E07.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_E07_A021 5', mRNA sequence
Length = 695
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
||||||||| | |||||| || || |||||||| ||||| |||||||||||
Sbjct: 502 gttccagagaaaggagtatgtatgaaagtcggccgtgggatcgaaccagag 452
>gb|CF670338.1|CF670338 RTCNT1_49_C11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C11_A029 5', mRNA sequence
Length = 767
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
||||||||| | |||||| || || |||||||| ||||| |||||||||||
Sbjct: 570 gttccagagaaaggagtatgtatgaaagtcggccgtgggatcgaaccagag 520
>gb|CO165955.1|CO165955 FLD1_58_G05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_G05_A029 3', mRNA sequence
Length = 841
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 184 gttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
||||||||| | |||||| || || |||||||| ||||| |||||||||||
Sbjct: 784 gttccagagaaaggagtatgtatgaaagtcggccgtgggatcgaaccagag 834
>gb|CO174759.1|CO174759 NDL1_46_C11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_46_C11_A029 3', mRNA sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 184 gttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
||||||||| | |||||| || || |||||||| ||||| |||||||||||
Sbjct: 207 gttccagagaaaggagtatgtatgaaagtcggccgtgggatcgaaccagag 257
>gb|CO198305.1|CO198305 GEO1_12_E11.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_12_E11_A029 5', mRNA sequence
Length = 785
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaa 210
|||||||||||||||||| ||||||||
Sbjct: 391 gttccagaggatggagtaagtgtggaa 365
>gb|CO200545.1|CO200545 GEO2_8_C07.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_C07_A032 3', mRNA sequence
Length = 769
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaa 210
|||||||||||||||||| ||||||||
Sbjct: 41 gttccagaggatggagtaagtgtggaa 15
>gb|CO200627.1|CO200627 GEO2_8_C07.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_C07_A032 5', mRNA sequence
Length = 792
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaa 210
|||||||||||||||||| ||||||||
Sbjct: 490 gttccagaggatggagtaagtgtggaa 464
>gb|CO367672.1|CO367672 RTK1_35_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_35_F12_A029 5', mRNA sequence
Length = 804
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaa 210
|||||||||||||||||| ||||||||
Sbjct: 490 gttccagaggatggagtaagtgtggaa 464
>gb|DR069069.1|DR069069 RTDK1_4_E04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_4_E04_A029 5', mRNA sequence
Length = 750
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaa 210
|||||||||||||||||| ||||||||
Sbjct: 491 gttccagaggatggagtaagtgtggaa 465
>gb|DR162321.1|DR162321 RTFE1_17_D04.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_17_D04_A029 3', mRNA sequence
Length = 672
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 184 gttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
||||||||| | |||||| || || |||||||| ||||| |||||||||||
Sbjct: 511 gttccagagaaaggagtatgtatgaaagtcggccgtgggatcgaaccagag 561
>gb|DR689329.1|DR689329 EST1079415 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACH13 3' end, mRNA sequence
Length = 793
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
||||||||| | |||||| || || |||||||| ||||| |||||||||||
Sbjct: 636 gttccagagaaaggagtatgtatgaaagtcggccgtgggatcgaaccagag 586
>gb|DT635662.1|DT635662 EST1150593 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGJ26 3' end, mRNA sequence
Length = 784
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 184 gttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
||||||||| | |||||| || || |||||||| ||||| |||||||||||
Sbjct: 644 gttccagagaaaggagtatgtatgaaagtcggccgtgggatcgaaccagag 594
>gb|AL750678.1|AL750678 AL750678 RN Pinus pinaster cDNA clone RN06B03 similar to XYLOGLUCAN
ENDOTRANSGLYCOSYLASE, mRNA sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 429 tggaaatctgcggtggggtcgaaccagagg 400
>gb|BX251529.1|BX251529 BX251529 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP050G11 similar to BRASSINOSTEROID REGULATED
PROTEIN BRU1, mRNA sequence
Length = 670
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 437 tggaaatctgcggtggggtcgaaccagagg 408
>gb|AW985199.1|AW985199 NXNV_132_D01_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_132_D01 5' similar to Arabidopsis thaliana
sequence At2g18800 putative xyloglucan
endo-transglycosylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 251
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 133 tggaaatctgcggtggggtcgaaccagagg 104
>gb|BE209174.1|BE209174 NXNV_164_H08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_164_H08 5' similar to Arabidopsis thaliana
sequence At4g03210 putative xyloglucan
endotransglycosylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 62 tggaaatctgcggtggggtcgaaccagagg 33
>gb|BG275452.1|BG275452 NXSI_139_A02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_A02 5' similar to Arabidopsis thaliana
sequence At4g03210 putative xyloglucan
endotransglycosylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 536
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 418 tggaaatctgcggtggggtcgaaccagagg 389
>gb|CF389327.1|CF389327 RTDR2_9_B04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_9_B04_A021 5', mRNA
sequence
Length = 712
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 420 tggaaatctgcggtggggtcgaaccagagg 391
>gb|CF391895.1|CF391895 RTDR3_10_A11.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_A11_A022 5', mRNA
sequence
Length = 783
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 635 tggaaatctgcggtggggtcgaaccagagg 664
>gb|CF392100.1|CF392100 RTDR3_12_C12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_12_C12_A022 5', mRNA
sequence
Length = 785
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 637 tggaaatctgcggtggggtcgaaccagagg 666
>gb|CF393529.1|CF393529 RTDR3_13_A10.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_A10_A022 5', mRNA
sequence
Length = 739
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 124 tggaaatctgcggtggggtcgaaccagagg 95
>gb|CF475842.1|CF475842 RTWW2_15_D08.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_15_D08_A021 5', mRNA sequence
Length = 785
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 406 tggaaatctgcggtggggtcgaaccagagg 377
>gb|CF478518.1|CF478518 RTWW3_20_G08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_G08_A022 5', mRNA sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 367 tggaaatctgcggtggggtcgaaccagagg 338
>gb|CF666139.1|CF666139 RTCNT1_21_C11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_21_C11_A029 3', mRNA sequence
Length = 809
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 112 tggaaatctgcggtggggtcgaaccagagg 83
>gb|CF666201.1|CF666201 RTCNT1_21_C11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_21_C11_A029 5', mRNA sequence
Length = 745
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 398 tggaaatctgcggtggggtcgaaccagagg 369
>gb|CF671241.1|CF671241 RTCNT1_55_F04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_55_F04_A029 5', mRNA sequence
Length = 739
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 656 tggaaatctgcggtggggtcgaaccagagg 685
>gb|CR392952.1|CR392952 CR392952 RN Pinus pinaster cDNA clone RN50E02_1, mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 422 tggaaatctgcggtggggtcgaaccagagg 393
>gb|CO166714.1|CO166714 FLD1_64_B02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_B02_A029 3', mRNA sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 67 tggaaatctgcggtggggtcgaaccagagg 38
>gb|CO166785.1|CO166785 FLD1_64_B02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_B02_A029 5', mRNA sequence
Length = 845
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 443 tggaaatctgcggtggggtcgaaccagagg 414
>gb|CO198162.1|CO198162 GEO1_11_E05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_11_E05_A029 5', mRNA sequence
Length = 787
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 398 tggaaatctgcggtggggtcgaaccagagg 369
>gb|CO200212.1|CO200212 GEO2_6_C09.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_C09_A032 3', mRNA sequence
Length = 891
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 462 tggaaatctgcggtggggtcgaaccagagg 491
>gb|CO200294.1|CO200294 GEO2_6_C09.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_C09_A032 5', mRNA sequence
Length = 854
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 590 tggaaatctgcggtggggtcgaaccagagg 619
>gb|CO362254.1|CO362254 RTK1_2_H07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_2_H07_A029 3', mRNA sequence
Length = 706
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 274 tggaaatctgcggtggggtcgaaccagagg 303
>gb|CO364445.1|CO364445 RTK1_15_F04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_F04_A029 5', mRNA sequence
Length = 892
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 409 tggaaatctgcggtggggtcgaaccagagg 380
>gb|CV034171.1|CV034171 RTNACL1_39_E01.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_39_E01_A029 3', mRNA sequence
Length = 814
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 465 tggaaatctgcggtggggtcgaaccagagg 494
>gb|CV034467.1|CV034467 RTNACL1_9_D03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_D03_A029 3', mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 59 tggaaatctgcggtggggtcgaaccagagg 30
>gb|CV034476.1|CV034476 RTNACL1_9_E03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_E03_A029 3', mRNA sequence
Length = 758
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 117 tggaaatctgcggtggggtcgaaccagagg 88
>gb|CV034483.1|CV034483 RTNACL1_9_F03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_F03_A029 3', mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 98 tggaaatctgcggtggggtcgaaccagagg 69
>gb|CV034526.1|CV034526 RTNACL1_9_D03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_D03_A029 5', mRNA sequence
Length = 705
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 386 tggaaatctgcggtggggtcgaaccagagg 357
>gb|CV034533.1|CV034533 RTNACL1_9_E03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_E03_A029 5', mRNA sequence
Length = 759
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 385 tggaaatctgcggtggggtcgaaccagagg 356
>gb|CV034538.1|CV034538 RTNACL1_9_F03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_F03_A029 5', mRNA sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 385 tggaaatctgcggtggggtcgaaccagagg 356
>gb|CV036423.1|CV036423 RTNACL1_59_D12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_59_D12_A029 3', mRNA sequence
Length = 691
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 50 tggaaatctgcggtggggtcgaaccagagg 21
>gb|CV036496.1|CV036496 RTNACL1_59_D12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_59_D12_A029 5', mRNA sequence
Length = 770
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 465 tggaaatctgcggtggggtcgaaccagagg 436
>gb|CX646397.1|CX646397 COLD1_9_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_D03_A029 3', mRNA sequence
Length = 802
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaacca 231
|||||||||||||||| |||||||||| |||||| ||||||||
Sbjct: 186 tccagaggatggagtaattgtggaagtcttgggtgggatcgaacca 141
>gb|CX650736.1|CX650736 COLD1_47_F07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_F07_A029 5', mRNA sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 275 tggaaatctgcggtggggtcgaaccagagg 246
>gb|CX712945.1|CX712945 RTPQ1_5_H08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_H08_A032 5', mRNA sequence
Length = 807
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 240 tggaaatctgcggtggggtcgaaccagagg 211
>gb|CX713574.1|CX713574 RTPQ1_10_G07.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_G07_A032 5', mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 241 tggaaatctgcggtggggtcgaaccagagg 212
>gb|CX713838.1|CX713838 RTPQ1_13_G08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_G08_A032 5', mRNA sequence
Length = 741
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 206 tggaagtcggcggtggggtcgaaccagagg 235
||||| || |||||||||||||||||||||
Sbjct: 668 tggaaatctgcggtggggtcgaaccagagg 697
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,045
Number of Sequences: 355925
Number of extensions: 69045
Number of successful extensions: 16475
Number of sequences better than 0.5: 122
Number of HSP's better than 0.5 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16342
Number of HSP's gapped (non-prelim): 133
length of query: 757
length of database: 217,277,237
effective HSP length: 19
effective length of query: 738
effective length of database: 210,514,662
effective search space: 155359820556
effective search space used: 155359820556
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)