BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115139.2.1
(1079 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF385232.1|CF385232 RTDR1_2_C01.g1_A015 Loblolly pine ro... 50 2e-004
gb|CF386582.1|CF386582 RTDR1_15_F07.g1_A015 Loblolly pine r... 50 2e-004
gb|CF470763.1|CF470763 RTDS1_14_F01.g1_A015 Drought-stresse... 50 2e-004
gb|CF477062.1|CF477062 RTWW3_5_A08.g1_A022 Well-watered lob... 50 2e-004
gb|CF670155.1|CF670155 RTCNT1_48_A05.g1_A029 Root control P... 50 2e-004
gb|CF672467.1|CF672467 RTCNT1_63_G01.g1_A029 Root control P... 50 2e-004
gb|CX652113.1|CX652113 COLD1_57_B07.b1_A029 Root cold Pinus... 50 2e-004
gb|CX652266.1|CX652266 COLD1_58_B06.b1_A029 Root cold Pinus... 50 2e-004
gb|CX652430.1|CX652430 COLD1_59_B07.b1_A029 Root cold Pinus... 50 2e-004
gb|DR018089.1|DR018089 STRS1_20_A03.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR018755.1|DR018755 STRS1_25_B05.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR019220.1|DR019220 STRS1_28_C05.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR025138.1|DR025138 STRS1_69_G06.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR061216.1|DR061216 RTNIT1_32_G04.g1_A029 Roots minus ni... 50 2e-004
gb|DR094292.1|DR094292 STRR1_13_D10.g1_A033 Stem Response R... 50 2e-004
gb|DR097150.1|DR097150 STRR1_32_G10.g1_A033 Stem Response R... 50 2e-004
gb|CF396030.1|CF396030 RTDS2_20_F10.g1_A021 Drought-stresse... 48 8e-004
gb|CF397517.1|CF397517 RTDS3_4_G08.b2_A022 Drought-stressed... 48 8e-004
gb|CF470433.1|CF470433 RTDS1_17_B12.g1_A015 Drought-stresse... 48 8e-004
gb|CO158542.1|CO158542 FLD1_7_C09.g1_A029 Root flooded Pinu... 48 8e-004
gb|CO167742.1|CO167742 FLD1_70_H03.g1_A029 Root flooded Pin... 48 8e-004
gb|CV034631.1|CV034631 RTNACL1_10_B11.g1_A029 Roots plus ad... 48 8e-004
gb|DR023320.1|DR023320 STRS1_56_G04.g1_A034 Shoot tip pitch... 48 8e-004
gb|DR119467.1|DR119467 RTMG1_23_A07.g1_A029 Roots minus mag... 48 8e-004
gb|DR386036.1|DR386036 RTHG1_12_B07.g1_A029 Roots plus adde... 48 8e-004
gb|CR393786.1|CR393786 CR393786 RN Pinus pinaster cDNA clon... 42 0.047
gb|DR093275.1|DR093275 STRR1_7_E11.b1_A033 Stem Response Re... 42 0.047
>gb|CF385232.1|CF385232 RTDR1_2_C01.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_2_C01_A015 5', mRNA
sequence
Length = 664
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 62 ggtttcatggcctcctggctcgtcaagcg 90
>gb|CF386582.1|CF386582 RTDR1_15_F07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_15_F07_A015 5', mRNA
sequence
Length = 705
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 32 ggtttcatggcctcctggctcgtcaagcg 60
>gb|CF470763.1|CF470763 RTDS1_14_F01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_14_F01_A015 5', mRNA sequence
Length = 776
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 106 ggtttcatggcctcctggctcgtcaagcg 134
>gb|CF477062.1|CF477062 RTWW3_5_A08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_A08_A022 5', mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 32 ggtttcatggcctcctggctcgtcaagcg 60
>gb|CF670155.1|CF670155 RTCNT1_48_A05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_A05_A029 5', mRNA sequence
Length = 780
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 84 ggtttcatggcctcctggctcgtcaagcg 112
>gb|CF672467.1|CF672467 RTCNT1_63_G01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_63_G01_A029 5', mRNA sequence
Length = 266
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 61 ggtttcatggcctcctggctcgtcaagcg 89
>gb|CX652113.1|CX652113 COLD1_57_B07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_B07_A029 3', mRNA sequence
Length = 323
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 266 ggtttcatggcctcctggctcgtcaagcg 238
>gb|CX652266.1|CX652266 COLD1_58_B06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B06_A029 3', mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 555 ggtttcatggcctcctggctcgtcaagcg 527
>gb|CX652430.1|CX652430 COLD1_59_B07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_B07_A029 3', mRNA sequence
Length = 531
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 466 ggtttcatggcctcctggctcgtcaagcg 438
>gb|DR018089.1|DR018089 STRS1_20_A03.g1_A034 Shoot tip pitch canker susceptible Pinus
taeda cDNA clone STRS1_20_A03_A034 5', mRNA sequence
Length = 656
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 22 ggtttcatggcctcctggctcgtcaagcg 50
>gb|DR018755.1|DR018755 STRS1_25_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_B05_A034 5', mRNA sequence
Length = 818
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 93 ggtttcatggcctcctggctcgtcaagcg 121
>gb|DR019220.1|DR019220 STRS1_28_C05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_C05_A034 5', mRNA sequence
Length = 836
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 92 ggtttcatggcctcctggctcgtcaagcg 120
>gb|DR025138.1|DR025138 STRS1_69_G06.g1_A034 Shoot tip pitch canker susceptible Pinus
taeda cDNA clone STRS1_69_G06_A034 5', mRNA sequence
Length = 384
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 53 ggtttcatggcctcctggctcgtcaagcg 81
>gb|DR061216.1|DR061216 RTNIT1_32_G04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_32_G04_A029 5', mRNA sequence
Length = 694
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 32 ggtttcatggcctcctggctcgtcaagcg 60
>gb|DR094292.1|DR094292 STRR1_13_D10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_D10_A033 5', mRNA sequence
Length = 872
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 94 ggtttcatggcctcctggctcgtcaagcg 122
>gb|DR097150.1|DR097150 STRR1_32_G10.g1_A033 Stem Response Resistant Pinus taeda cDNA
clone STRR1_32_G10_A033 5', mRNA sequence
Length = 750
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| ||||||||||||||||||||
Sbjct: 69 ggtttcatggcctcctggctcgtcaagcg 97
>gb|CF396030.1|CF396030 RTDS2_20_F10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_F10_A021 5', mRNA sequence
Length = 681
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 256 agagctgatctctgcgaggaagggagcttcga 287
>gb|CF397517.1|CF397517 RTDS3_4_G08.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_G08_A022 3', mRNA sequence
Length = 756
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 637 agagctgatctctgcgaggaagggagcttcga 606
>gb|CF470433.1|CF470433 RTDS1_17_B12.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_17_B12_A015 5', mRNA sequence
Length = 439
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 263 agagctgatctctgcgaggaagggagcttcga 294
>gb|CO158542.1|CO158542 FLD1_7_C09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_C09_A029 5', mRNA sequence
Length = 760
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 309 agagctgatctctgcgaggaagggagcttcga 340
>gb|CO167742.1|CO167742 FLD1_70_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_H03_A029 5', mRNA sequence
Length = 725
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 125 agagctgatctctgcgaggaagggagcttcga 156
>gb|CV034631.1|CV034631 RTNACL1_10_B11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_B11_A029 5', mRNA sequence
Length = 775
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 291 agagctgatctctgcgaggaagggagcttcga 322
>gb|DR023320.1|DR023320 STRS1_56_G04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_G04_A034 5', mRNA sequence
Length = 772
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 336 agagctgatctctgcgaggaagggagcttcga 367
>gb|DR119467.1|DR119467 RTMG1_23_A07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_A07_A029 5', mRNA sequence
Length = 715
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 335 agagctgatctctgcgaggaagggagcttcga 366
>gb|DR386036.1|DR386036 RTHG1_12_B07.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_B07_A029 5', mRNA sequence
Length = 860
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 agagctgatctcttggaggaagggagcttcga 218
||||||||||||| |||||||||||||||||
Sbjct: 302 agagctgatctctgcgaggaagggagcttcga 333
>gb|CR393786.1|CR393786 CR393786 RN Pinus pinaster cDNA clone RN65C12, mRNA sequence
Length = 510
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||||| || |||||||||||||||||
Sbjct: 95 ggtttcatggcgtcctggctcgtcaagcg 123
>gb|DR093275.1|DR093275 STRR1_7_E11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_E11_A033 3', mRNA sequence
Length = 856
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 46 ggtttcatcgcctcctggctcgtcaagcg 74
|||||| | ||||||||||||||||||||
Sbjct: 698 ggtttcgtggcctcctggctcgtcaagcg 670
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,237
Number of Sequences: 355925
Number of extensions: 93237
Number of successful extensions: 24335
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24295
Number of HSP's gapped (non-prelim): 40
length of query: 1079
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1060
effective length of database: 210,514,662
effective search space: 223145541720
effective search space used: 223145541720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)