BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.202
(3202 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW290681.1|AW290681 NXNV044H12F Nsf Xylem Normal wood Ve... 60 6e-007
gb|BX251481.1|BX251481 BX251481 Pinus pinaster differenciat... 60 6e-007
gb|BX252531.1|BX252531 BX252531 Pinus pinaster differenciat... 60 6e-007
gb|BX253318.1|BX253318 BX253318 Pinus pinaster differenciat... 60 6e-007
gb|BX255621.1|BX255621 BX255621 Pinus pinaster differenciat... 60 6e-007
gb|BE209183.1|BE209183 NXNV_147_A11_F Nsf Xylem Normal wood... 60 6e-007
gb|BE582096.1|BE582096 NXCI_025_D02_F NXCI (Nsf Xylem Compr... 60 6e-007
gb|BQ291210.1|BQ291210 NXRV057_C11_F NXRV (Nsf Xylem Root w... 60 6e-007
gb|BQ633787.1|BQ633787 NXRV060_G04_F NXRV (Nsf Xylem Root w... 60 6e-007
gb|BQ634334.1|BQ634334 NXRV067_F08_F NXRV (Nsf Xylem Root w... 60 6e-007
gb|BQ700572.1|BQ700572 NXRV108_D06_F NXRV (Nsf Xylem Root w... 60 6e-007
gb|CD027342.1|CD027342 NXNV044H12 Nsf Xylem Normal wood Ver... 60 6e-007
gb|CF395750.1|CF395750 RTDS2_16_G04.g1_A021 Drought-stresse... 60 6e-007
gb|BX682343.2|BX682343 BX682343 Pinus pinaster differenciat... 60 6e-007
gb|CO167170.1|CO167170 FLD1_67_G05.b1_A029 Root flooded Pin... 60 6e-007
gb|CO167251.1|CO167251 FLD1_67_G05.g1_A029 Root flooded Pin... 60 6e-007
gb|CO197649.1|CO197649 GEO1_8_A11.b1_A029 Root gravitropism... 60 6e-007
gb|CX646807.1|CX646807 COLD1_11_D10.g1_A029 Root cold Pinus... 60 6e-007
gb|CX651969.1|CX651969 COLD1_56_C01.b1_A029 Root cold Pinus... 60 6e-007
gb|CX713009.1|CX713009 RTPQ1_6_H09.b1_A032 Roots treated wi... 60 6e-007
gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated wi... 60 6e-007
gb|DR070028.1|DR070028 RTDK1_10_G09.g1_A029 Roots, dark Pin... 60 6e-007
gb|DR078047.1|DR078047 RTFEPL1_1_C11.g1_A029 Roots plus add... 60 6e-007
gb|DR097105.1|DR097105 STRR1_32_C03.g1_A033 Stem Response R... 60 6e-007
gb|DR169398.1|DR169398 RTPHOS1_32_D06.b1_A029 Roots minus p... 60 6e-007
gb|DR388937.1|DR388937 RTHG1_31_A01.g1_A029 Roots plus adde... 60 6e-007
emb|AJ309093.1|PPI309093 Pinus pinaster partial mRNA for pu... 60 6e-007
gb|AY705802.1| Pinus halepensis clone 21r sucrose synthase ... 60 6e-007
gb|CR354737.1|CR354737 CR354737 Pinus pinaster differenciat... 58 2e-006
dbj|BD236026.1| Materials and method for modification of pl... 56 9e-006
gb|DR051919.1|DR051919 RTCA1_1_F12.b1_A029 Roots minus calc... 52 1e-004
gb|CO164697.1|CO164697 FLD1_49_E08.g1_A029 Root flooded Pin... 50 6e-004
gb|DR079060.1|DR079060 RTFEPL1_8_E10.g1_A029 Roots plus add... 50 6e-004
gb|DR079650.1|DR079650 RTFEPL1_12_D08.g1_A029 Roots plus ad... 50 6e-004
gb|DR384947.1|DR384947 RTHG1_5_D12.g1_A029 Roots plus added... 50 6e-004
gb|BE209086.1|BE209086 NXNV_139_D04_F Nsf Xylem Normal wood... 48 0.002
gb|BE607297.1|BE607297 NXCI_038_H12_F NXCI (Nsf Xylem Compr... 48 0.002
dbj|BD236460.1| Materials and method for modification of pl... 48 0.002
dbj|BD235995.1| Materials and method for modification of pl... 44 0.035
gb|BG040013.1|BG040013 NXSI_105_D08_F NXSI (Nsf Xylem Side ... 42 0.14
>gb|AW290681.1|AW290681 NXNV044H12F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044H12 5', mRNA sequence
Length = 247
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 55 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 6
>gb|BX251481.1|BX251481 BX251481 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP050B05 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 701
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 229 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 180
>gb|BX252531.1|BX252531 BX252531 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066B03 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 712
Score = 60.0 bits (30), Expect = 6e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctcgccgttgcgg 1012
|||||||| || ||||| ||| ||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 445 gcaggctgtacaaaggcacccctggtgtcacagatgtagcggtaaagctcaccgttccgg 386
Query: 1013 ac 1014
||
Sbjct: 385 ac 384
>gb|BX253318.1|BX253318 BX253318 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP081C04 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 642
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 213 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 164
>gb|BX255621.1|BX255621 BX255621 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007G11 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 706
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 562 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 513
>gb|BE209183.1|BE209183 NXNV_147_A11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_147_A11 5' similar to Arabidopsis thaliana sequence
At3g43190 sucrose synthase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 524
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 316 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 267
>gb|BE582096.1|BE582096 NXCI_025_D02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_025_D02 5' similar to Arabidopsis
thaliana sequence At3g43190 sucrose synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 353
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 172 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 123
>gb|BQ291210.1|BQ291210 NXRV057_C11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV057_C11 5' similar to Arabidopsis thaliana
sequence At4g02280 putative sucrose synthetase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 604
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 218 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 169
>gb|BQ633787.1|BQ633787 NXRV060_G04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV060_G04 5' similar to Arabidopsis thaliana
sequence At4g02280 putative sucrose synthetase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 579
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 72 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 23
>gb|BQ634334.1|BQ634334 NXRV067_F08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV067_F08 5' similar to Arabidopsis thaliana
sequence At4g02280 putative sucrose synthetase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 679
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 107 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 58
>gb|BQ700572.1|BQ700572 NXRV108_D06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV108_D06 5' similar to Arabidopsis thaliana
sequence At3g43190 sucrose synthase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 398
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 65 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 16
>gb|CD027342.1|CD027342 NXNV044H12 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044H12 5' similar to Arabidopsis thaliana sequence
At3g43190 sucrose synthase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 247
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 55 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 6
>gb|CF395750.1|CF395750 RTDS2_16_G04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_G04_A021 5', mRNA sequence
Length = 788
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 99 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 50
>gb|BX682343.2|BX682343 BX682343 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 115C09 similar to Sucrose synthase (EC
2.4.1.13), mRNA sequence
Length = 612
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 87 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 38
>gb|CO167170.1|CO167170 FLD1_67_G05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_67_G05_A029 3', mRNA sequence
Length = 769
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 624 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 673
>gb|CO167251.1|CO167251 FLD1_67_G05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_67_G05_A029 5', mRNA sequence
Length = 903
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 729 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 778
>gb|CO197649.1|CO197649 GEO1_8_A11.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_8_A11_A029 3', mRNA sequence
Length = 769
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 591 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 640
>gb|CX646807.1|CX646807 COLD1_11_D10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_D10_A029 5', mRNA sequence
Length = 870
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 397 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 348
>gb|CX651969.1|CX651969 COLD1_56_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_56_C01_A029 3', mRNA sequence
Length = 653
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 424 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 473
>gb|CX713009.1|CX713009 RTPQ1_6_H09.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_H09_A032 3', mRNA sequence
Length = 831
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 57 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 8
>gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_H09_A032 5', mRNA sequence
Length = 829
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 718 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 669
>gb|DR070028.1|DR070028 RTDK1_10_G09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_10_G09_A029 5', mRNA sequence
Length = 734
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 568 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 519
>gb|DR078047.1|DR078047 RTFEPL1_1_C11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_1_C11_A029 5', mRNA sequence
Length = 865
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 784 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 833
>gb|DR097105.1|DR097105 STRR1_32_C03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_C03_A033 5', mRNA sequence
Length = 743
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 573 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 524
>gb|DR169398.1|DR169398 RTPHOS1_32_D06.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_32_D06_A029 3', mRNA sequence
Length = 554
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 140 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 189
>gb|DR388937.1|DR388937 RTHG1_31_A01.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_31_A01_A029 5', mRNA sequence
Length = 527
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 202 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 153
>emb|AJ309093.1|PPI309093 Pinus pinaster partial mRNA for putative sucrose synthase
Length = 787
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 601 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 552
>gb|AY705802.1| Pinus halepensis clone 21r sucrose synthase mRNA, complete cds
Length = 1105
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 228 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagctc 179
>gb|CR354737.1|CR354737 CR354737 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 125G08, mRNA sequence
Length = 729
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagct 1001
|||||||| || ||||| ||||| ||||| |||||||||||||||||||
Sbjct: 49 gcaggctgtacaaaggcaccctttgtgtcacagatgtagcggtacagct 1
>dbj|BD236026.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 1169
Score = 56.0 bits (28), Expect = 9e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctcgccgtt 1008
|||||||| || ||||| ||| ||||||| |||||||||||||| ||||| |||||
Sbjct: 553 gcaggctgtacaaaggcacccctggtgtcacagatgtagcggtaaagctcaccgtt 498
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaat 1428
|||||||| || |||||||||||||| || || ||||||||
Sbjct: 115 ccaggagaaacaatgttgaacttgggatcaaaaacatcaat 75
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaat 3185
|||||||| || |||||||||||||| || || ||||||||
Sbjct: 115 ccaggagaaacaatgttgaacttgggatcaaaaacatcaat 75
>gb|DR051919.1|DR051919 RTCA1_1_F12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_1_F12_A029 3', mRNA sequence
Length = 854
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 965 aaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 70 aaggcaccctttgtgtcacagatgtagcggtacagctc 33
>gb|CO164697.1|CO164697 FLD1_49_E08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_49_E08_A029 5', mRNA sequence
Length = 885
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaat 1428
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 126 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 86
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaat 3185
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 126 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 86
>gb|DR079060.1|DR079060 RTFEPL1_8_E10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_E10_A029 5', mRNA sequence
Length = 815
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaat 1428
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 610 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 570
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaat 3185
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 610 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 570
>gb|DR079650.1|DR079650 RTFEPL1_12_D08.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_D08_A029 5', mRNA sequence
Length = 845
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaat 1428
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 226 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 186
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaat 3185
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 226 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 186
>gb|DR384947.1|DR384947 RTHG1_5_D12.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_D12_A029 5', mRNA sequence
Length = 787
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaat 1428
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 280 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 240
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaat 3185
|||||||||||||||||||| ||||| || || ||||||||
Sbjct: 280 ccaggagacacgatgttgaatttgggatcaaaaacatcaat 240
>gb|BE209086.1|BE209086 NXNV_139_D04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_139_D04 5' similar to Arabidopsis thaliana sequence
At3g43190 sucrose synthase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 228
Score = 48.1 bits (24), Expect = 0.002
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| | || ||||| ||||||||||||||||||||
Sbjct: 149 gcaggctgtacaaaggcacnntttgtgtcacagatgtagcggtacagctc 100
>gb|BE607297.1|BE607297 NXCI_038_H12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_038_H12 5' similar to Arabidopsis
thaliana sequence At3g43190 sucrose synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 204
Score = 48.1 bits (24), Expect = 0.002
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 953 gcaggctgcacgaaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
|||||||| || ||||| | || ||||| ||||||||||||||||||||
Sbjct: 172 gcaggctgtacaaaggcacnntttgtgtcacagatgtagcggtacagctc 123
>dbj|BD236460.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 448
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaatgcc 3188
||||||| ||| |||||||| ||||| ||||| |||||||||||
Sbjct: 208 ccaggagccacaatgttgaatttgggatcgaaaacatcaatgcc 251
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaatgcc 1431
||||||| ||| |||||||| ||||| ||||| |||||||||||
Sbjct: 208 ccaggagccacaatgttgaatttgggatcgaaaacatcaatgcc 251
>dbj|BD235995.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 477
Score = 44.1 bits (22), Expect = 0.035
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 965 aaggcgcccttggtgtcgcagatgtagcggtacagctc 1002
||||| ||| ||||||| |||||||||||||| |||||
Sbjct: 474 aaggcacccctggtgtcacagatgtagcggtaaagctc 437
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaat 1428
|||||||| || |||||||||||||| || || ||||||||
Sbjct: 48 ccaggagaaacaatgttgaacttgggatcaaaaacatcaat 8
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaat 3185
|||||||| || |||||||||||||| || || ||||||||
Sbjct: 48 ccaggagaaacaatgttgaacttgggatcaaaaacatcaat 8
>gb|BG040013.1|BG040013 NXSI_105_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_105_D08 5' similar to Arabidopsis thaliana
sequence At4g02280 putative sucrose synthetase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1388 ccaggagacacgatgttgaacttggggtcgaacacatcaat 1428
|||||||| || |||||||||||||| || || ||||||||
Sbjct: 138 ccaggagaaacaatgttgaacttgggatcaaaaacatcaat 98
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 3145 ccaggagacacgatgttgaacttggggtcgaacacatcaat 3185
|||||||| || |||||||||||||| || || ||||||||
Sbjct: 138 ccaggagaaacaatgttgaacttgggatcaaaaacatcaat 98
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 328,689
Number of Sequences: 355925
Number of extensions: 328689
Number of successful extensions: 97621
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97555
Number of HSP's gapped (non-prelim): 65
length of query: 3202
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3182
effective length of database: 210,158,737
effective search space: 668725101134
effective search space used: 668725101134
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)