BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB644827.1|CB644827 OSJNEb06D08.f OSJNEb Oryza sativa (j... 488 e-135
dbj|AK070408.1| Oryza sativa (japonica cultivar-group) cDNA... 488 e-135
dbj|AK104929.1| Oryza sativa (japonica cultivar-group) cDNA... 488 e-135
ref|XM_469632.1| Oryza sativa (japonica cultivar-group), mRNA 488 e-135
gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 ... 293 6e-077
gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC O... 293 6e-077
gb|AACV01007878.1| Oryza sativa (japonica cultivar-group) c... 293 6e-077
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 293 6e-077
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 293 6e-077
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 293 6e-077
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 293 6e-077
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 293 6e-077
gb|CB670710.1|CB670710 OSJNEe03O24.f OSJNEe Oryza sativa (j... 281 2e-073
gb|AU066038.2|AU066038 AU066038 Rice shoot Oryza sativa (ja... 262 2e-067
gb|CF304455.1|CF304455 ABF1--05-A09.g1 ABF3-overexpressing ... 208 3e-051
gb|CA997884.1|CA997884 S234C1_A12 Rice cold stress germinat... 153 1e-034
gb|AU181006.1|AU181006 AU181006 Rice cDNA from leaf Oryza s... 147 9e-033
gb|CA999018.1|CA999018 S234M_B05 Rice cold stress germinati... 145 4e-032
gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) c... 105 3e-020
ref|XM_473037.1| Oryza sativa (japonica cultivar-group), p... 105 3e-020
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 105 3e-020
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 105 3e-020
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 105 3e-020
emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromoso... 105 3e-020
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 105 3e-020
gb|CB639455.1|CB639455 OSJNEa10L04.f OSJNEa Oryza sativa (j... 82 5e-013
gb|AQ794524.1|AQ794524 nbxb0053M11r CUGI Rice BAC Library O... 48 0.006
dbj|AK102748.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AC137547.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
>gb|CB644827.1|CB644827 OSJNEb06D08.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06D08 5', mRNA sequence
Length = 866
Score = 488 bits (246), Expect = e-135
Identities = 465/538 (86%)
Strand = Plus / Minus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 576 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 517
Query: 93 ccatggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaaa 152
|| |||||||||||||| | |||||||||||| ||||||||||||||| | | || | |
Sbjct: 516 ccgtggttgagctgtatcattcctcctttggtaaagttgaatgaattgtacatcggcaga 457
Query: 153 tacgagcacatgacgttgtcggtttggttgtggaatgtcctcagtatttcttcgtaaggg 212
||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 456 tacgagcacataacattgtctgtttggttgtgaaatgttctcagtatttcttcgtaagga 397
Query: 213 taccctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctggaagtttg 272
|| || ||||||||||| || |||| |||||| ||||||||||||||||||||||| |||
Sbjct: 396 tatccaggacttaggaaaagccgcaacctgctcagaagaacctgagctcctggaagcttg 337
Query: 273 tcatcccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgcttc 332
|||||||||||||| ||||| || || ||||| | | ||||||||||||||| |||||
Sbjct: 336 tcatcccaggtaaaaactccataattcggactatcgagccagtatgctccagcatgcttt 277
Query: 333 gccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcgaagtacatc 392
||||| ||||| ||||| || || | ||||| | |||||||| ||||| |||||||||
Sbjct: 276 gccatccccggagctgttgcaaccgataggtatgtattgttccctgtggcaaagtacatc 217
Query: 393 cacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctgg 452
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| || || ||
Sbjct: 216 cacgcaccaccccacacaaactcatcccagtaactggtggaattgtagaaaattgcttga 157
Query: 453 tcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttg 512
||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 156 tcagagccattggggctgtatctcccacgctgcagcctaccgaacttgtacagggccttt 97
Query: 513 gcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 96 gcgccacgcacgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctg 39
>dbj|AK070408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054M04, full
insert sequence
Length = 2397
Score = 488 bits (246), Expect = e-135
Identities = 465/538 (86%)
Strand = Plus / Minus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 1578 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 1519
Query: 93 ccatggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaaa 152
|| |||||||||||||| | |||||||||||| ||||||||||||||| | | || | |
Sbjct: 1518 ccgtggttgagctgtatcattcctcctttggtaaagttgaatgaattgtacatcggcaga 1459
Query: 153 tacgagcacatgacgttgtcggtttggttgtggaatgtcctcagtatttcttcgtaaggg 212
||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1458 tacgagcacataacattgtctgtttggttgtgaaatgttctcagtatttcttcgtaagga 1399
Query: 213 taccctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctggaagtttg 272
|| || ||||||||||| || |||| |||||| ||||||||||||||||||||||| |||
Sbjct: 1398 tatccaggacttaggaaaagccgcaacctgctcagaagaacctgagctcctggaagcttg 1339
Query: 273 tcatcccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgcttc 332
|||||||||||||| ||||| || || ||||| | | ||||||||||||||| |||||
Sbjct: 1338 tcatcccaggtaaaaactccataattcggactatcgagccagtatgctccagcatgcttt 1279
Query: 333 gccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcgaagtacatc 392
||||| ||||| ||||| || || | ||||| | |||||||| ||||| |||||||||
Sbjct: 1278 gccatccccggagctgttgcaaccgataggtatgtattgttccctgtggcaaagtacatc 1219
Query: 393 cacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctgg 452
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| || || ||
Sbjct: 1218 cacgcaccaccccacacaaactcatcccagtaactggtggaattgtagaaaattgcttga 1159
Query: 453 tcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttg 512
||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1158 tcagagccattggggctgtatctcccacgctgcagcctaccgaacttgtacagggccttt 1099
Query: 513 gcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 1098 gcgccacgcacgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctg 1041
>dbj|AK104929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D09, full
insert sequence
Length = 1963
Score = 488 bits (246), Expect = e-135
Identities = 465/538 (86%)
Strand = Plus / Minus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 1153 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 1094
Query: 93 ccatggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaaa 152
|| |||||||||||||| | |||||||||||| ||||||||||||||| | | || | |
Sbjct: 1093 ccgtggttgagctgtatcattcctcctttggtaaagttgaatgaattgtacatcggcaga 1034
Query: 153 tacgagcacatgacgttgtcggtttggttgtggaatgtcctcagtatttcttcgtaaggg 212
||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1033 tacgagcacataacattgtctgtttggttgtgaaatgttctcagtatttcttcgtaagga 974
Query: 213 taccctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctggaagtttg 272
|| || ||||||||||| || |||| |||||| ||||||||||||||||||||||| |||
Sbjct: 973 tatccaggacttaggaaaagccgcaacctgctcagaagaacctgagctcctggaagcttg 914
Query: 273 tcatcccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgcttc 332
|||||||||||||| ||||| || || ||||| | | ||||||||||||||| |||||
Sbjct: 913 tcatcccaggtaaaaactccataattcggactatcgagccagtatgctccagcatgcttt 854
Query: 333 gccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcgaagtacatc 392
||||| ||||| ||||| || || | ||||| | |||||||| ||||| |||||||||
Sbjct: 853 gccatccccggagctgttgcaaccgataggtatgtattgttccctgtggcaaagtacatc 794
Query: 393 cacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctgg 452
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| || || ||
Sbjct: 793 cacgcaccaccccacacaaactcatcccagtaactggtggaattgtagaaaattgcttga 734
Query: 453 tcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttg 512
||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 733 tcagagccattggggctgtatctcccacgctgcagcctaccgaacttgtacagggccttt 674
Query: 513 gcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 673 gcgccacgcacgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctg 616
>ref|XM_469632.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2313
Score = 488 bits (246), Expect = e-135
Identities = 465/538 (86%)
Strand = Plus / Minus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 1477 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 1418
Query: 93 ccatggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaaa 152
|| |||||||||||||| | |||||||||||| ||||||||||||||| | | || | |
Sbjct: 1417 ccgtggttgagctgtatcattcctcctttggtaaagttgaatgaattgtacatcggcaga 1358
Query: 153 tacgagcacatgacgttgtcggtttggttgtggaatgtcctcagtatttcttcgtaaggg 212
||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1357 tacgagcacataacattgtctgtttggttgtgaaatgttctcagtatttcttcgtaagga 1298
Query: 213 taccctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctggaagtttg 272
|| || ||||||||||| || |||| |||||| ||||||||||||||||||||||| |||
Sbjct: 1297 tatccaggacttaggaaaagccgcaacctgctcagaagaacctgagctcctggaagcttg 1238
Query: 273 tcatcccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgcttc 332
|||||||||||||| ||||| || || ||||| | | ||||||||||||||| |||||
Sbjct: 1237 tcatcccaggtaaaaactccataattcggactatcgagccagtatgctccagcatgcttt 1178
Query: 333 gccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcgaagtacatc 392
||||| ||||| ||||| || || | ||||| | |||||||| ||||| |||||||||
Sbjct: 1177 gccatccccggagctgttgcaaccgataggtatgtattgttccctgtggcaaagtacatc 1118
Query: 393 cacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctgg 452
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| || || ||
Sbjct: 1117 cacgcaccaccccacacaaactcatcccagtaactggtggaattgtagaaaattgcttga 1058
Query: 453 tcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttg 512
||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1057 tcagagccattggggctgtatctcccacgctgcagcctaccgaacttgtacagggccttt 998
Query: 513 gcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 997 gcgccacgcacgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctg 940
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
sequence
Length = 139946
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Plus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 56779 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 56838
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 56839 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 56898
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 56899 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 56958
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 56959 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 57018
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 57019 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 57078
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 57079 cttgaacactatggaagctg 57098
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 56405 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 56464
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 56465 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 56524
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 56525 aacctgctcagaagaacctga 56545
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 56244 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 56303
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 56304 ccgtggttgagctgtatcattcctcct 56330
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
sequence
Length = 159661
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Minus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 119768 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 119709
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 119708 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 119649
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 119648 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 119589
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 119588 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 119529
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 119528 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 119469
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 119468 cttgaacactatggaagctg 119449
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Minus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 120142 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 120083
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 120082 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 120023
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 120022 aacctgctcagaagaacctga 120002
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 120303 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 120244
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 120243 ccgtggttgagctgtatcattcctcct 120217
>gb|AACV01007878.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007878, whole
genome shotgun sequence
Length = 25339
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Plus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 5877 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 5936
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 5937 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 5996
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 5997 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 6056
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 6057 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 6116
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 6117 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 6176
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 6177 cttgaacactatggaagctg 6196
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 5503 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 5562
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 5563 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 5622
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 5623 aacctgctcagaagaacctga 5643
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 5342 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 5401
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 5402 ccgtggttgagctgtatcattcctcct 5428
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Plus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 3197341 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 3197400
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 3197401 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 3197460
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 3197461 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 3197520
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 3197521 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 3197580
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 3197581 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 3197640
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 3197641 cttgaacactatggaagctg 3197660
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 3196967 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 3197026
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 3197027 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 3197086
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 3197087 aacctgctcagaagaacctga 3197107
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 3196806 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 3196865
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 3196866 ccgtggttgagctgtatcattcctcct 3196892
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Plus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 3584842 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 3584901
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 3584902 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 3584961
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 3584962 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 3585021
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 3585022 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 3585081
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 3585082 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 3585141
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 3585142 cttgaacactatggaagctg 3585161
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 3584468 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 3584527
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 3584528 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 3584587
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 3584588 aacctgctcagaagaacctga 3584608
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 3584307 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 3584366
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 3584367 ccgtggttgagctgtatcattcctcct 3584393
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Plus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 30851005 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 30851064
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 30851065 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 30851124
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 30851125 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 30851184
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 30851185 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 30851244
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 30851245 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 30851304
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 30851305 cttgaacactatggaagctg 30851324
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 30850631 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 30850690
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 30850691 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 30850750
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 30850751 aacctgctcagaagaacctga 30850771
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 30850470 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 30850529
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 30850530 ccgtggttgagctgtatcattcctcct 30850556
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 12368047 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 12368102
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 12366368 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 12366427
Query: 84 tgaggcct 91
|| |||||
Sbjct: 12366428 tgtggcct 12366435
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Plus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 29982260 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 29982319
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 29982320 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 29982379
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 29982380 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 29982439
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 29982440 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 29982499
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 29982500 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 29982559
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 29982560 cttgaacactatggaagctg 29982579
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 29981886 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 29981945
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 29981946 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 29982005
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 29982006 aacctgctcagaagaacctga 29982026
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 29981725 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 29981784
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 29981785 ccgtggttgagctgtatcattcctcct 29981811
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 12076457 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 12076512
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 12074778 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 12074837
Query: 84 tgaggcct 91
|| |||||
Sbjct: 12074838 tgtggcct 12074845
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 293 bits (148), Expect = 6e-077
Identities = 277/320 (86%)
Strand = Plus / Plus
Query: 251 aacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaa 310
|||||||||||||||||| ||||||||||||||||| ||||| || || ||||| | |
Sbjct: 29890838 aacctgagctcctggaagcttgtcatcccaggtaaaaactccataattcggactatcgag 29890897
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 29890898 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 29890957
Query: 371 gttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggt 430
|||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 29890958 gttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaactggt 29891017
Query: 431 ggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcct 490
||| |||||||| || || || ||||| || ||||||||||||| |||||||||||||||
Sbjct: 29891018 ggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcct 29891077
Query: 491 gccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtc 550
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 29891078 accgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgtc 29891137
Query: 551 cttgaacactatggaagctg 570
||||||||||||||||||||
Sbjct: 29891138 cttgaacactatggaagctg 29891157
Score = 129 bits (65), Expect = 2e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 117 cctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtt 176
|||||||| ||||||||||||||| | | || | |||||||||||| || ||||| |||
Sbjct: 29890464 cctttggtaaagttgaatgaattgtacatcggcagatacgagcacataacattgtctgtt 29890523
Query: 177 tggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgc 236
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct: 29890524 tggttgtgaaatgttctcagtatttcttcgtaaggatatccaggacttaggaaaagccgc 29890583
Query: 237 agcctgctgagaagaacctga 257
| |||||| ||||||||||||
Sbjct: 29890584 aacctgctcagaagaacctga 29890604
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 29890303 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 29890362
Query: 93 ccatggttgagctgtattaatcctcct 119
|| |||||||||||||| | |||||||
Sbjct: 29890363 ccgtggttgagctgtatcattcctcct 29890389
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 12079694 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 12079749
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 12078015 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 12078074
Query: 84 tgaggcct 91
|| |||||
Sbjct: 12078075 tgtggcct 12078082
>gb|CB670710.1|CB670710 OSJNEe03O24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03O24 5', mRNA sequence
Length = 798
Score = 281 bits (142), Expect = 2e-073
Identities = 279/325 (85%)
Strand = Plus / Minus
Query: 246 agaagaacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggactt 305
||||||||||||||||||||||| | ||||||||||||| ||||| || || |||||
Sbjct: 797 agaagaacctgagctcctggaagctgtncatcccaggtaaaaactccataattcggacta 738
Query: 306 ccaaaccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtac 365
| | ||||||||||||||| ||||| ||||| ||||| ||||| || || | |||||
Sbjct: 737 tcgagccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtat 678
Query: 366 gagttgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtag 425
| |||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 677 gtattgttccctgtggcaaagtacatccacgcaccaccccacacaaactcatcccagtaa 618
Query: 426 ctggtggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgc 485
|||||||| |||||||| || || || ||||| || ||||||||||||| ||||||||||
Sbjct: 617 ctggtggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgc 558
Query: 486 agcctgccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttg 545
||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 557 agcctaccgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttg 498
Query: 546 ctgtccttgaacactatggaagctg 570
|||||||||||||||||||||||||
Sbjct: 497 ctgtccttgaacactatggaagctg 473
>gb|AU066038.2|AU066038 AU066038 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0028_1A, mRNA sequence
Length = 370
Score = 262 bits (132), Expect = 2e-067
Identities = 271/316 (85%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 34 cgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttc 93
||||||||| ||| |||||||| | || |||||| | |||||||| || ||||||||||
Sbjct: 365 cgctgtatagagagccaaggaaacc-gcattgacaacatactgaagtggctgaggccttc 307
Query: 94 catggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaaat 153
| |||||||||||||| | |||||||||||| ||||||||||||||| | | || | ||
Sbjct: 306 cgtggttgagctgtatcattcctcctttggtaaagttgaatgaattgtacatcggcagat 247
Query: 154 acgagcacatgacgttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggt 213
|||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 246 acgagcacataacattgtctgtttggttgtgaaatgttctcagtatttcttcgtaaggat 187
Query: 214 accctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctggaagtttgt 273
| || ||||||||||| || |||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 186 atccaggacttaggaaaagccgcaacctgctcagaagaacctgagctcctggaagcttgt 127
Query: 274 catcccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgcttcg 333
||||||||||||| ||||| || || ||||| | | ||||||||||||||| ||||| |
Sbjct: 126 catcccaggtaaaaactccataattcggactatcgagccagtatgctccagcatgctttg 67
Query: 334 ccattcccggggctgt 349
|||| ||||| |||||
Sbjct: 66 ccatccccggagctgt 51
>gb|CF304455.1|CF304455 ABF1--05-A09.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--05-A09, mRNA sequence
Length = 637
Score = 208 bits (105), Expect = 3e-051
Identities = 223/261 (85%), Gaps = 1/261 (0%)
Strand = Plus / Minus
Query: 311 ccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagtt 370
||||||||||||||| ||||| ||||| ||||| ||||| || || | ||||| | ||
Sbjct: 600 ccagtatgctccagcatgctttgccatccccggagctgttgcaaccgataggtatgtatt 541
Query: 371 gttccccgtggcgaagtacatcca-cgcaccgccccacacgaactcgtcccagtagctgg 429
|||||| ||||| ||||||||||| |||||| |||| | ||||| |||||||| ||||
Sbjct: 540 gttccctgtggcaaagtacatccaacgcaccacccccaccaaactcatcccagtaactgg 481
Query: 430 tggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcc 489
|||| |||||||| || || || ||||| || ||||||||||||| ||||||||||||||
Sbjct: 480 tggaattgtagaaaattgcttgatcagagccattggggctgtatctcccacgctgcagcc 421
Query: 490 tgccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgt 549
| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct: 420 taccgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttgctgt 361
Query: 550 ccttgaacactatggaagctg 570
|||||||||||||||||||||
Sbjct: 360 ccttgaacactatggaagctg 340
>gb|CA997884.1|CA997884 S234C1_A12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 533
Score = 153 bits (77), Expect = 1e-034
Identities = 128/145 (88%)
Strand = Plus / Minus
Query: 426 ctggtggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgc 485
|||||||| ||||| || || || || ||||| || ||||||||||||| ||||||||||
Sbjct: 530 ctggtggaattgtaaaaaattgcttgatcagagccattggggctgtatctcccacgctgc 471
Query: 486 agcctgccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttg 545
||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 470 agcctaccgaacttgtacagggcctttgcgccacgcacgagcttgtcagagtaagtcttg 411
Query: 546 ctgtccttgaacactatggaagctg 570
|||||||||||||||||||||||||
Sbjct: 410 ctgtccttgaacactatggaagctg 386
>gb|AU181006.1|AU181006 AU181006 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10291, mRNA sequence
Length = 300
Score = 147 bits (74), Expect = 9e-033
Identities = 107/118 (90%)
Strand = Plus / Minus
Query: 453 tcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttg 512
||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 288 tcagagccattggggctgtatctcccacgctgcagcctaccgaacttgtacagggccttt 229
Query: 513 gcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 228 gcgccacgcacgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctg 171
>gb|CA999018.1|CA999018 S234M_B05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 264
Score = 145 bits (73), Expect = 4e-032
Identities = 142/165 (86%)
Strand = Plus / Minus
Query: 33 tcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggcctt 92
|||||||||| ||| ||||||||||| || |||||| | |||||||| || |||||||||
Sbjct: 165 tcgctgtatagagaggcaaggaaagccgcattgacaacatactgaagtggctgaggcctt 106
Query: 93 ccatggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaaa 152
|| |||||||||||||| | |||||||||||| ||||||||||||||| | | || | |
Sbjct: 105 ccgtggttgagctgtatcattcctcctttggtaaagttgaatgaattgtacatcggcaga 46
Query: 153 tacgagcacatgacgttgtcggtttggttgtggaatgtcctcagt 197
||||||||||| || ||||| ||||||||||| ||||| ||||||
Sbjct: 45 tacgagcacataacattgtctgtttggttgtgaaatgttctcagt 1
>gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010055, whole
genome shotgun sequence
Length = 22746
Score = 105 bits (53), Expect = 3e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||| ||| | |||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 12168 gtggcgaaggtgatgtaggtgttgttccccgtggcgtagtacatccacgccgcgctccac 12109
Query: 408 acgaactcgtcccagtagctggtggagttgtag 440
| | |||||||||||||||||||||||||||||
Sbjct: 12108 atgtactcgtcccagtagctggtggagttgtag 12076
>ref|XM_473037.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1872
Score = 105 bits (53), Expect = 3e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||| ||| | |||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 1058 gtggcgaaggtgatgtaggtgttgttccccgtggcgtagtacatccacgccgcgctccac 999
Query: 408 acgaactcgtcccagtagctggtggagttgtag 440
| | |||||||||||||||||||||||||||||
Sbjct: 998 atgtactcgtcccagtagctggtggagttgtag 966
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 105 bits (53), Expect = 3e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||| ||| | |||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 2444432 gtggcgaaggtgatgtaggtgttgttccccgtggcgtagtacatccacgccgcgctccac 2444491
Query: 408 acgaactcgtcccagtagctggtggagttgtag 440
| | |||||||||||||||||||||||||||||
Sbjct: 2444492 atgtactcgtcccagtagctggtggagttgtag 2444524
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 105 bits (53), Expect = 3e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||| ||| | |||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 2759764 gtggcgaaggtgatgtaggtgttgttccccgtggcgtagtacatccacgccgcgctccac 2759823
Query: 408 acgaactcgtcccagtagctggtggagttgtag 440
| | |||||||||||||||||||||||||||||
Sbjct: 2759824 atgtactcgtcccagtagctggtggagttgtag 2759856
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 105 bits (53), Expect = 3e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||| ||| | |||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 21903863 gtggcgaaggtgatgtaggtgttgttccccgtggcgtagtacatccacgccgcgctccac 21903922
Query: 408 acgaactcgtcccagtagctggtggagttgtag 440
| | |||||||||||||||||||||||||||||
Sbjct: 21903923 atgtactcgtcccagtagctggtggagttgtag 21903955
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
complete sequence
Length = 170765
Score = 105 bits (53), Expect = 3e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||| ||| | |||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 102125 gtggcgaaggtgatgtaggtgttgttccccgtggcgtagtacatccacgccgcgctccac 102184
Query: 408 acgaactcgtcccagtagctggtggagttgtag 440
| | |||||||||||||||||||||||||||||
Sbjct: 102185 atgtactcgtcccagtagctggtggagttgtag 102217
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 105 bits (53), Expect = 3e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||| ||| | |||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 24840409 gtggcgaaggtgatgtaggtgttgttccccgtggcgtagtacatccacgccgcgctccac 24840468
Query: 408 acgaactcgtcccagtagctggtggagttgtag 440
| | |||||||||||||||||||||||||||||
Sbjct: 24840469 atgtactcgtcccagtagctggtggagttgtag 24840501
>gb|CB639455.1|CB639455 OSJNEa10L04.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa10L04 5', mRNA sequence
Length = 560
Score = 81.8 bits (41), Expect = 5e-013
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 522 acgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 552 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctg 504
>gb|AQ794524.1|AQ794524 nbxb0053M11r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0053M11r, DNA sequence
Length = 710
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 46 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 101
>dbj|AK102748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106K04, full
insert sequence
Length = 2189
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 1490 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 1431
Query: 84 tgaggcct 91
|| |||||
Sbjct: 1430 tgtggcct 1423
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 1130 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 1075
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
complete sequence
Length = 144969
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 100274 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 100329
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 98595 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 98654
Query: 84 tgaggcct 91
|| |||||
Sbjct: 98655 tgtggcct 98662
>gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006539, whole
genome shotgun sequence
Length = 40585
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 8476 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 8531
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 6797 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 6856
Query: 84 tgaggcct 91
|| |||||
Sbjct: 6857 tgtggcct 6864
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 3421954 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 3422009
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 3420275 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 3420334
Query: 84 tgaggcct 91
|| |||||
Sbjct: 3420335 tgtggcct 3420342
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 387 tacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaa 442
|||||||| | ||| ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 12175685 tacatccatgaaccaccccatacaaactcatcccagtagctggttgagttatagaa 12175740
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 24 tcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagcggt 83
||||||||||| | ||| |||||||||||||| || ||||| || | |||||||| |||
Sbjct: 12174006 tcaagatagtcaccgtacaaagaagcaaggaatgcagcgttcaccacatactgaagaggt 12174065
Query: 84 tgaggcct 91
|| |||||
Sbjct: 12174066 tgtggcct 12174073
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 644,592
Number of Sequences: 438736
Number of extensions: 644592
Number of successful extensions: 4905
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4674
Number of HSP's gapped (non-prelim): 186
length of query: 689
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 668
effective length of database: 2,791,206,460
effective search space: 1864525915280
effective search space used: 1864525915280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)