BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF25f04.yg.3.3
(1599 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100745.1| Oryza sativa (japonica cultivar-group) cDNA... 1088 0.0
ref|XM_470491.1| Oryza sativa (japonica cultivar-group), mRNA 1088 0.0
dbj|AK072679.1| Oryza sativa (japonica cultivar-group) cDNA... 1041 0.0
gb|CF311522.1|CF311522 ABF--06-M08.b1 ABF3-overexpressing t... 509 e-141
gb|AU065258.2|AU065258 AU065258 Rice cDNA from immature lea... 373 e-100
gb|CF311523.1|CF311523 ABF--06-M08.g1 ABF3-overexpressing t... 172 4e-040
gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 ... 159 6e-036
gb|AACV01006602.1| Oryza sativa (japonica cultivar-group) c... 159 6e-036
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 159 6e-036
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 159 6e-036
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 159 6e-036
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 159 6e-036
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 159 6e-036
gb|AU095247.1|AU095247 AU095247 Rice cDNA from immature lea... 82 1e-012
gb|CF308007.1|CF308007 ABF--01-K11.b1 ABF3-overexpressing t... 80 4e-012
gb|CF308008.1|CF308008 ABF--01-K11.g1 ABF3-overexpressing t... 72 1e-009
>dbj|AK100745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118H18, full
insert sequence
Length = 3882
Score = 1088 bits (549), Expect = 0.0
Identities = 1033/1194 (86%), Gaps = 2/1194 (0%)
Strand = Plus / Plus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacattcta 60
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| ||||| ||
Sbjct: 2254 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacatcctg 2313
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 2314 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 2373
Query: 121 at-tttcttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgat 179
|| |||||| |||||| | ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 2374 atctttctt-gacatgttgacagtttacagaatgtacagtgagcttgtatcaagcaccat 2432
Query: 180 tgctgaaggaggaccctttgcctcaaggacgtcatttgtaaaactcttgagatctgtcaa 239
||||||||| ||||| |||||||||||||| || |||||||||||| | |||||||||||
Sbjct: 2433 tgctgaagggggaccttttgcctcaaggacctcctttgtaaaactccttagatctgtcaa 2492
Query: 240 gagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagatttgccacatgt 299
||||||||| | || ||||| ||||||||||||||||| || |||||| | ||||| |
Sbjct: 2493 gagggaaacattgaaattgattgagacttttgtggacaaagctgaagatctaccacacat 2552
Query: 300 aggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgt 359
|| || |||||||| || || |||||||||||| |||||| ||| ||||||||||||||
Sbjct: 2553 tgggaaacagtttgttcctcctatgatggatcctattcttgctgactatgctagaaatgt 2612
Query: 360 acccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaa 419
|||||||| ||||| ||||||||||||||| ||||||| || ||||| ||||| |||||
Sbjct: 2613 tcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcataaacaaatacaa 2672
Query: 420 aggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttga 479
||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 2673 aggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcactcttga 2732
Query: 480 gatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgct 539
|||||| ||||| |||||||||||||| || ||||| ||||||||| |||||||
Sbjct: 2733 gatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgct 2792
Query: 540 tcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcagcaattgaa 599
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2793 tcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcagcaattgaa 2852
Query: 600 gcttgtgatcgattcaattaattgggcgttcagacatacagagagaaatattgcagagac 659
|||||||| || || || || ||||| || ||||||||||||||||| || ||||||||
Sbjct: 2853 acttgtgattgactctatcaactgggcatttagacatacagagagaaacatcgcagagac 2912
Query: 660 tggccttagcctgttgttggagatcttgaaaaaattccaggcttcaggattccaaaacca 719
||| || || || ||| |||| || || || || || ||||| |||||||||||||| ||
Sbjct: 2913 tggtctcagtctattgctggaaattttaaagaactttcaggcctcaggattccaaaatca 2972
Query: 720 attctacaaaacctactttttgacaattgagcaagagatttttgcagtcctcacagacac 779
|||||||||||| || ||||||| ||||| |||||||| |||||||| || ||||||||
Sbjct: 2973 attctacaaaacttattttttgaatattgaacaagagatctttgcagttctgacagacac 3032
Query: 780 attccataaacctggtttcaagcttcatgtttcggtgctacaacacttgttttgtgcggt 839
|||||| || |||||||||||||||||||||| |||||| || ||||| ||||||| |||
Sbjct: 3033 attccacaagcctggtttcaagcttcatgttttggtgctgcagcacttattttgtgtggt 3092
Query: 840 tgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacggataa 899
||||||||| ||||||||||| ||||| || || || |||||||| |||||||| || ||
Sbjct: 3093 tgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactgacaa 3152
Query: 900 tgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacatgac 959
|| |||||||| ||||||||||| |||||||| ||||| |||||||||| ||||||||
Sbjct: 3153 cgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacatgac 3212
Query: 960 tgtagctgaggtgaccaagtttgtggatggccttcttagttcaaaacttgatcttccgag 1019
||||||| || || ||||| ||||| |||||||||||||||| ||| ||||| ||
Sbjct: 3213 acctactgaggttacaaaatttgttgatgggcttcttagttcaaaacatgaccttccaag 3272
Query: 1020 cttcaaaaaccatattagagatttcctggtgcagtcgaaggagttctcagctcaggataa 1079
|||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct: 3273 cttcaaaaaccatattagggatttcctggtgcaatcaaaggagttctcggctcaggataa 3332
Query: 1080 caaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatgct 1139
|||||| | || || |||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 3333 taaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaacgaatgct 3392
Query: 1140 tgccattccggggctgattgcccctagcgaattgcaagacgagatggtagattc 1193
||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||||
Sbjct: 3393 tgccattccagggcttattgccccaagcgaattacaagatgagatggttgattc 3446
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 3534 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 3593
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 3594 acttggtgctgattgcgagattt 3616
>ref|XM_470491.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3679
Score = 1088 bits (549), Expect = 0.0
Identities = 1033/1194 (86%), Gaps = 2/1194 (0%)
Strand = Plus / Plus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacattcta 60
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| ||||| ||
Sbjct: 2017 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacatcctg 2076
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 2077 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 2136
Query: 121 at-tttcttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgat 179
|| |||||| |||||| | ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 2137 atctttctt-gacatgttgacagtttacagaatgtacagtgagcttgtatcaagcaccat 2195
Query: 180 tgctgaaggaggaccctttgcctcaaggacgtcatttgtaaaactcttgagatctgtcaa 239
||||||||| ||||| |||||||||||||| || |||||||||||| | |||||||||||
Sbjct: 2196 tgctgaagggggaccttttgcctcaaggacctcctttgtaaaactccttagatctgtcaa 2255
Query: 240 gagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagatttgccacatgt 299
||||||||| | || ||||| ||||||||||||||||| || |||||| | ||||| |
Sbjct: 2256 gagggaaacattgaaattgattgagacttttgtggacaaagctgaagatctaccacacat 2315
Query: 300 aggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgt 359
|| || |||||||| || || |||||||||||| |||||| ||| ||||||||||||||
Sbjct: 2316 tgggaaacagtttgttcctcctatgatggatcctattcttgctgactatgctagaaatgt 2375
Query: 360 acccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaa 419
|||||||| ||||| ||||||||||||||| ||||||| || ||||| ||||| |||||
Sbjct: 2376 tcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcataaacaaatacaa 2435
Query: 420 aggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttga 479
||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 2436 aggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcactcttga 2495
Query: 480 gatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgct 539
|||||| ||||| |||||||||||||| || ||||| ||||||||| |||||||
Sbjct: 2496 gatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgct 2555
Query: 540 tcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcagcaattgaa 599
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2556 tcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcagcaattgaa 2615
Query: 600 gcttgtgatcgattcaattaattgggcgttcagacatacagagagaaatattgcagagac 659
|||||||| || || || || ||||| || ||||||||||||||||| || ||||||||
Sbjct: 2616 acttgtgattgactctatcaactgggcatttagacatacagagagaaacatcgcagagac 2675
Query: 660 tggccttagcctgttgttggagatcttgaaaaaattccaggcttcaggattccaaaacca 719
||| || || || ||| |||| || || || || || ||||| |||||||||||||| ||
Sbjct: 2676 tggtctcagtctattgctggaaattttaaagaactttcaggcctcaggattccaaaatca 2735
Query: 720 attctacaaaacctactttttgacaattgagcaagagatttttgcagtcctcacagacac 779
|||||||||||| || ||||||| ||||| |||||||| |||||||| || ||||||||
Sbjct: 2736 attctacaaaacttattttttgaatattgaacaagagatctttgcagttctgacagacac 2795
Query: 780 attccataaacctggtttcaagcttcatgtttcggtgctacaacacttgttttgtgcggt 839
|||||| || |||||||||||||||||||||| |||||| || ||||| ||||||| |||
Sbjct: 2796 attccacaagcctggtttcaagcttcatgttttggtgctgcagcacttattttgtgtggt 2855
Query: 840 tgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacggataa 899
||||||||| ||||||||||| ||||| || || || |||||||| |||||||| || ||
Sbjct: 2856 tgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactgacaa 2915
Query: 900 tgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacatgac 959
|| |||||||| ||||||||||| |||||||| ||||| |||||||||| ||||||||
Sbjct: 2916 cgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacatgac 2975
Query: 960 tgtagctgaggtgaccaagtttgtggatggccttcttagttcaaaacttgatcttccgag 1019
||||||| || || ||||| ||||| |||||||||||||||| ||| ||||| ||
Sbjct: 2976 acctactgaggttacaaaatttgttgatgggcttcttagttcaaaacatgaccttccaag 3035
Query: 1020 cttcaaaaaccatattagagatttcctggtgcagtcgaaggagttctcagctcaggataa 1079
|||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct: 3036 cttcaaaaaccatattagggatttcctggtgcaatcaaaggagttctcggctcaggataa 3095
Query: 1080 caaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatgct 1139
|||||| | || || |||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 3096 taaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaacgaatgct 3155
Query: 1140 tgccattccggggctgattgcccctagcgaattgcaagacgagatggtagattc 1193
||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||||
Sbjct: 3156 tgccattccagggcttattgccccaagcgaattacaagatgagatggttgattc 3209
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 3297 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 3356
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 3357 acttggtgctgattgcgagattt 3379
>dbj|AK072679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136O19, full
insert sequence
Length = 1597
Score = 1041 bits (525), Expect = 0.0
Identities = 997/1154 (86%), Gaps = 2/1154 (0%)
Strand = Plus / Plus
Query: 41 gatcagttctcaacattctacagacaaacacaagtgttgcgagctcacttgggccacact 100
|||| ||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1 gatctgttcttaacatcctgcagacaaacacaagtgttgctagctcacttggaccacact 60
Query: 101 tcttcccacagatttcactaat-tttcttggacatgctaacagtctacagaatgtacagc 159
| ||||| || ||||| ||||| |||||| |||||| | ||||| ||||||||||||||
Sbjct: 61 ttttcccgcaaatttccctaatctttctt-gacatgttgacagtttacagaatgtacagt 119
Query: 160 gagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaaggacgtcatttgta 219
||||||||||||||||| ||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 120 gagcttgtatcaagcaccattgctgaagggggaccttttgcctcaaggacctcctttgta 179
Query: 220 aaactcttgagatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaag 279
|||||| | |||||||||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 180 aaactccttagatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaa 239
Query: 280 gcggaagatttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttctt 339
|| |||||| | ||||| | || || |||||||| || || |||||||||||| |||||
Sbjct: 240 gctgaagatctaccacacattgggaaacagtttgttcctcctatgatggatcctattctt 299
Query: 340 ggtgattatgctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgca 399
| ||| ||||||||||||| |||||||| ||||| ||||||||||||||| |||||||
Sbjct: 300 gctgactatgctagaaatgatcccgatgctagggaatctgaagttctgtccctgtttgcg 359
Query: 400 acaatcattaacaagtacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggct 459
|| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||||||||||
Sbjct: 360 acgatcataaacaaatacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggct 419
Query: 460 gttttccagtgcacccttgagatgattactaagaactttgaagattatcctgagcaccgc 519
|||||||||||||| ||||||||||| ||||| |||||||||||||| || ||||| |||
Sbjct: 420 gttttccagtgcactcttgagatgatcactaaaaactttgaagattacccggagcatcgc 479
Query: 520 ctcaaannnnnnnctttgcttcgtgcaattggcacccattgcttccaagcattaatccag 579
|||||| ||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 480 ctcaaatttttctctttgcttcgtgcgattggcacccattgcttccaagcattaattcag 539
Query: 580 ctttcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacataca 639
|||||||||||||||||||| |||||||| || || || || ||||| || |||||||||
Sbjct: 540 ctttcaagtcagcaattgaaacttgtgattgactctatcaactgggcatttagacataca 599
Query: 640 gagagaaatattgcagagactggccttagcctgttgttggagatcttgaaaaaattccag 699
|||||||| || ||||||||||| || || || ||| |||| || || || || || |||
Sbjct: 600 gagagaaacatcgcagagactggtctcagtctattgctggaaattttaaagaactttcag 659
Query: 700 gcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagagatt 759
|| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||||
Sbjct: 660 gcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagagatc 719
Query: 760 tttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtgcta 819
|||||||| || |||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct: 720 tttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtgctg 779
Query: 820 caacacttgttttgtgcggttgatggtctaacggagcctctatgggacgcgtcttctgta 879
|| ||||| ||||||| |||||||||||| ||||||||||| ||||| || || || |||
Sbjct: 780 cagcacttattttgtgtggttgatggtctgacggagcctctctgggatgcatcctcagta 839
Query: 880 ccatatcaatatacggataatgccatgtttgttcgagattacaccataaaactcttagga 939
||||| |||||||| || || || |||||||| ||||||||||| |||||||| |||||
Sbjct: 840 ccataccaatatactgacaacgctatgtttgtccgagattacacaataaaacttttaggt 899
Query: 940 acatcatttcctaacatgactgtagctgaggtgaccaagtttgtggatggccttcttagt 999
|||||||||| |||||||| ||||||| || || ||||| ||||| |||||||||
Sbjct: 900 tcatcatttcccaacatgacacctactgaggttacaaaatttgttgatgggcttcttagt 959
Query: 1000 tcaaaacttgatcttccgagcttcaaaaaccatattagagatttcctggtgcagtcgaag 1059
||||||| ||| ||||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct: 960 tcaaaacatgaccttccaagcttcaaaaaccatattagggatttcctggtgcaatcaaag 1019
Query: 1060 gagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaa 1119
|||||||| ||||||||||| |||||| | || || |||||||||||||| ||||||||
Sbjct: 1020 gagttctcggctcaggataataaggatttgtatgctgaagaggctgctgcacaaagagag 1079
Query: 1120 agggagcgccaacgaatgcttgccattccggggctgattgcccctagcgaattgcaagac 1179
|||||||| |||||||||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct: 1080 agggagcgtcaacgaatgcttgccattccagggcttattgccccaagcgaattacaagat 1139
Query: 1180 gagatggtagattc 1193
|||||||| |||||
Sbjct: 1140 gagatggttgattc 1153
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 1241 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 1300
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 1301 acttggtgctgattgcgagattt 1323
>gb|CF311522.1|CF311522 ABF--06-M08.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-M08, mRNA sequence
Length = 598
Score = 509 bits (257), Expect = e-141
Identities = 507/589 (86%), Gaps = 3/589 (0%)
Strand = Plus / Plus
Query: 308 agtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgtacccgatg 367
||||||| || || |||||||||||| |||||| ||| |||||||||||||| |||||||
Sbjct: 1 agtttgttcctcctatgatggatcctattcttgctgactatgctagaaatgttcccgatg 60
Query: 368 caagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaaggggaaa 427
| ||||| ||||||||||||||| ||||||| || ||||| ||||| |||||||| ||||
Sbjct: 61 ctagggaatctgaagttctgtccctgtttgcgacgatcataaacaaatacaaaggtgaaa 120
Query: 428 tgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgagatgatta 487
||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 121 tgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcactcttgagatgatca 180
Query: 488 ctaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgcttcgtgcaa 547
|||| |||||||||||||| || ||||| ||||||||| ||||||||||||| |
Sbjct: 181 ctaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgcttcgtgcga 240
Query: 548 ttggcacccattgcttccaagcattaatccagctttcaagtcagcaattgaagcttgtga 607
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 241 ttggcacccattgcttccaagcattaattcagctttcaagtcagcaattgaaacttgtga 300
Query: 608 tcgattcaattaattgggcgttcagacatacagagagaaatattgcagagactggcctta 667
| || || || || ||||| || ||||||||||||||||| || ||||||||||| || |
Sbjct: 301 ttgactctatcaactgggcatttagacatacagagagaaacatcgcagagactggtctca 360
Query: 668 gcctgttgttggagatcttgaaaaaattccaggcttcaggattccaaaaccaattctaca 727
| || ||| |||| || || || || || ||||| |||||||||||||| ||||||||||
Sbjct: 361 gtctattgctggaaattttaaagaactttcaggcctcaggattccaaaatcaattctaca 420
Query: 728 aaacctactttttgacaattgagcaagagatttttgcagtcctcacagacacattccata 787
|||| || ||||||| ||||| ||||||| || |||||| || |||||||||||||| |
Sbjct: 421 aaacttattttttgaatattgaacaagagacttntgcagttctgacagacacattccaca 480
Query: 788 aacctggtttcaagcttcatg-tttcggtgctacaacacttgttttgtg-cggttgat-g 844
| ||||||||||||||||||| ||| |||||| || ||||| ||||||| ||||||| |
Sbjct: 481 agcctggtttcaagcttcatgtttttggtgctgcagcacttattttgtgtgggttgatgg 540
Query: 845 gtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatac 893
|||| ||||||||||| ||||| || || || |||||||| ||||||||
Sbjct: 541 gtctgacggagcctctctgggatgcatcctcagtaccataccaatatac 589
>gb|AU065258.2|AU065258 AU065258 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E60917, mRNA
sequence
Length = 464
Score = 373 bits (188), Expect = e-100
Identities = 396/464 (85%), Gaps = 1/464 (0%)
Strand = Plus / Plus
Query: 622 tgggcgttcagacatacagagagaaatattgcagagactggccttagcctgttgttggag 681
||||| || ||||||||||||||||| || ||||||||||| || || || ||| ||||
Sbjct: 1 tgggcatttagacatacagagagaaacatcgcagagactggtctcagtctattgctggaa 60
Query: 682 atcttgaaaaaattccaggcttcaggattccaaaaccaattctacaaaacctactttttg 741
|| || || || || ||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct: 61 attttaaagaactttcaggcctcaggattccaaaatcaattctacaaaacttattttttg 120
Query: 742 acaattgagcaagagatttttgcagtcctcacagacacattccataaacctggtttcaag 801
| ||||| |||||||| |||||||| || |||||||||||||| || ||||||||||||
Sbjct: 121 aatattgaacaagagatctttgcagttctgacagacacattccacaagcctggtttcaag 180
Query: 802 cttcatgtttcggtgctacaacacttgttttgtgcggttgatggtctaacggagcctcta 861
|||||||||| |||||| || ||||| ||||||| |||||||||||| |||||||||||
Sbjct: 181 cttcatgttttggtgctgcagcacttattttgtgtggttgatggtctgacggagcctctc 240
Query: 862 tgggacgcgtcttctgtaccatatcaatatacggataatgccatgtttgttcgagattac 921
||||| || || || |||||||| |||||||| || || || |||||||| |||||||||
Sbjct: 241 tgggatgcatcctcagtaccataccaatatactgacaacgctatgtttgtccgagattac 300
Query: 922 accataaaactcttaggaacatcatttcctaacatgactgtagctgaggtgaccaagttt 981
|| |||||||| ||||| |||||||||| |||||||| ||||||| || || |||
Sbjct: 301 acaataaaacttttaggttcatcatttcccaacatgacacctactgaggttacaaaattt 360
Query: 982 gtggatggccttcttagttcaaaac-ttgatcttccgagcttcaaaaaccatattagaga 1040
|| ||||| |||||||||||||||| | || ||||| |||||||||||||||||||| ||
Sbjct: 361 gttgatgggcttcttagttcaaaacatggaccttccaagcttcaaaaaccatattaggga 420
Query: 1041 tttcctggtgcagtcgaaggagttctcagctcaggataacaagg 1084
|||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct: 421 tttcctggtgcaatcaaaggagttctcggctcaggataataagg 464
>gb|CF311523.1|CF311523 ABF--06-M08.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group) cDNA
clone ABF--06-M08, mRNA sequence
Length = 618
Score = 172 bits (87), Expect = 4e-040
Identities = 138/155 (89%)
Strand = Plus / Minus
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaa 1098
|||||||||||||| || ||||||||||| ||||||||||| |||||| | || || |||
Sbjct: 615 gatttcctggtgcaatcaaaggagttctcggctcaggataataaggatttgtatgctgaa 556
Query: 1099 gaggctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgatt 1158
||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 555 gaggctgctgcacaaagagagagggagcgtcaacgaatgcttgccattccagggcttatt 496
Query: 1159 gcccctagcgaattgcaagacgagatggtagattc 1193
||||| |||||||| ||||| |||||||| |||||
Sbjct: 495 gccccaagcgaattacaagatgagatggttgattc 461
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 371 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 312
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 311 acttggtgctgattgcgagattt 289
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
sequence
Length = 145115
Score = 159 bits (80), Expect = 6e-036
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
|||||||||||||||||||| | || ||||| ||||||||||||||||| || ||||||
Sbjct: 49793 agatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaagctgaagat 49852
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
| ||||| | || || |||||||| || || |||||||||||| |||||| ||| |||
Sbjct: 49853 ctaccacacattgggaaacagtttgttcctcctatgatggatcctattcttgctgactat 49912
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
||||||||||| |||||||| ||||| ||||||||||||||| ||||||| || |||||
Sbjct: 49913 gctagaaatgttcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcata 49972
Query: 409 aacaagta 416
||||||||
Sbjct: 49973 aacaagta 49980
Score = 149 bits (75), Expect = 5e-033
Identities = 123/139 (88%)
Strand = Plus / Plus
Query: 697 caggcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagag 756
||||| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 50717 caggcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagag 50776
Query: 757 atttttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtg 816
|| |||||||| || |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 50777 atctttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtg 50836
Query: 817 ctacaacacttgttttgtg 835
|| || ||||| |||||||
Sbjct: 50837 ctgcagcacttattttgtg 50855
Score = 129 bits (65), Expect = 5e-027
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 1073 aggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaac 1132
||||||| |||||| | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct: 51683 aggataataaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaac 51742
Query: 1133 gaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagatt 1192
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 51743 gaatgcttgccattccagggcttattgccccaagcgaattacaagatgagatggttgatt 51802
Query: 1193 c 1193
|
Sbjct: 51803 c 51803
Score = 127 bits (64), Expect = 2e-026
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| ||||| |||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 50291 agatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgc 50350
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 50351 ttcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcag 50403
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 979 tttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattaga 1038
||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 51147 tttgttgatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagg 51206
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcagg 1075
|||||||||||||| || ||||||||||| |||||||
Sbjct: 51207 gatttcctggtgcaatcaaaggagttctcggctcagg 51243
Score = 109 bits (55), Expect = 5e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 837 ggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacgga 896
|||||||||||| ||||||||||| ||||| || || || |||||||| |||||||| ||
Sbjct: 50934 ggttgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactga 50993
Query: 897 taatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacat 956
|| || |||||||| ||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct: 50994 caacgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacat 51053
Query: 957 gac 959
|||
Sbjct: 51054 gac 51056
Score = 109 bits (55), Expect = 5e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 49615 cagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctcaag 49674
Query: 207 gacgtcatttgtaaaactc 225
||| || ||||||||||||
Sbjct: 49675 gacctcctttgtaaaactc 49693
Score = 91.7 bits (46), Expect = 1e-015
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 415 tacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacc 474
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 50141 tacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcact 50200
Query: 475 cttgag 480
||||||
Sbjct: 50201 cttgag 50206
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 51891 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 51950
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 51951 acttggtgctgattgcgagattt 51973
Score = 75.8 bits (38), Expect = 7e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 48995 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 49054
Query: 121 at 122
||
Sbjct: 49055 at 49056
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
|||||||||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 50528 tcagcaattgaaacttgtgattgactctatcaactgggcatttagacatacagagagaaa 50587
Query: 648 tattgcagagactgg 662
|| |||||||||||
Sbjct: 50588 catcgcagagactgg 50602
Score = 56.0 bits (28), Expect = 6e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacat 56
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct: 48339 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacat 48394
>gb|AACV01006602.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006602, whole
genome shotgun sequence
Length = 16722
Score = 159 bits (80), Expect = 6e-036
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
|||||||||||||||||||| | || ||||| ||||||||||||||||| || ||||||
Sbjct: 9539 agatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaagctgaagat 9598
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
| ||||| | || || |||||||| || || |||||||||||| |||||| ||| |||
Sbjct: 9599 ctaccacacattgggaaacagtttgttcctcctatgatggatcctattcttgctgactat 9658
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
||||||||||| |||||||| ||||| ||||||||||||||| ||||||| || |||||
Sbjct: 9659 gctagaaatgttcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcata 9718
Query: 409 aacaagta 416
||||||||
Sbjct: 9719 aacaagta 9726
Score = 149 bits (75), Expect = 5e-033
Identities = 123/139 (88%)
Strand = Plus / Plus
Query: 697 caggcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagag 756
||||| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 10463 caggcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagag 10522
Query: 757 atttttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtg 816
|| |||||||| || |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 10523 atctttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtg 10582
Query: 817 ctacaacacttgttttgtg 835
|| || ||||| |||||||
Sbjct: 10583 ctgcagcacttattttgtg 10601
Score = 129 bits (65), Expect = 5e-027
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 1073 aggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaac 1132
||||||| |||||| | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct: 11429 aggataataaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaac 11488
Query: 1133 gaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagatt 1192
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 11489 gaatgcttgccattccagggcttattgccccaagcgaattacaagatgagatggttgatt 11548
Query: 1193 c 1193
|
Sbjct: 11549 c 11549
Score = 127 bits (64), Expect = 2e-026
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| ||||| |||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 10037 agatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgc 10096
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10097 ttcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcag 10149
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 979 tttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattaga 1038
||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 10893 tttgttgatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagg 10952
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcagg 1075
|||||||||||||| || ||||||||||| |||||||
Sbjct: 10953 gatttcctggtgcaatcaaaggagttctcggctcagg 10989
Score = 109 bits (55), Expect = 5e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 837 ggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacgga 896
|||||||||||| ||||||||||| ||||| || || || |||||||| |||||||| ||
Sbjct: 10680 ggttgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactga 10739
Query: 897 taatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacat 956
|| || |||||||| ||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct: 10740 caacgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacat 10799
Query: 957 gac 959
|||
Sbjct: 10800 gac 10802
Score = 109 bits (55), Expect = 5e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 9361 cagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctcaag 9420
Query: 207 gacgtcatttgtaaaactc 225
||| || ||||||||||||
Sbjct: 9421 gacctcctttgtaaaactc 9439
Score = 91.7 bits (46), Expect = 1e-015
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 415 tacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacc 474
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 9887 tacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcact 9946
Query: 475 cttgag 480
||||||
Sbjct: 9947 cttgag 9952
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 11637 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 11696
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 11697 acttggtgctgattgcgagattt 11719
Score = 75.8 bits (38), Expect = 7e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 8741 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 8800
Query: 121 at 122
||
Sbjct: 8801 at 8802
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
|||||||||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 10274 tcagcaattgaaacttgtgattgactctatcaactgggcatttagacatacagagagaaa 10333
Query: 648 tattgcagagactgg 662
|| |||||||||||
Sbjct: 10334 catcgcagagactgg 10348
Score = 56.0 bits (28), Expect = 6e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacat 56
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct: 8085 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacat 8140
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 159 bits (80), Expect = 6e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
|||||||||||||||||||| | || ||||| ||||||||||||||||| || ||||||
Sbjct: 1213093 agatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaagctgaagat 1213034
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
| ||||| | || || |||||||| || || |||||||||||| |||||| ||| |||
Sbjct: 1213033 ctaccacacattgggaaacagtttgttcctcctatgatggatcctattcttgctgactat 1212974
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
||||||||||| |||||||| ||||| ||||||||||||||| ||||||| || |||||
Sbjct: 1212973 gctagaaatgttcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcata 1212914
Query: 409 aacaagta 416
||||||||
Sbjct: 1212913 aacaagta 1212906
Score = 149 bits (75), Expect = 5e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 697 caggcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagag 756
||||| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 1212169 caggcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagag 1212110
Query: 757 atttttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtg 816
|| |||||||| || |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 1212109 atctttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtg 1212050
Query: 817 ctacaacacttgttttgtg 835
|| || ||||| |||||||
Sbjct: 1212049 ctgcagcacttattttgtg 1212031
Score = 129 bits (65), Expect = 5e-027
Identities = 107/121 (88%)
Strand = Plus / Minus
Query: 1073 aggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaac 1132
||||||| |||||| | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct: 1211203 aggataataaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaac 1211144
Query: 1133 gaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagatt 1192
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 1211143 gaatgcttgccattccagggcttattgccccaagcgaattacaagatgagatggttgatt 1211084
Query: 1193 c 1193
|
Sbjct: 1211083 c 1211083
Score = 127 bits (64), Expect = 2e-026
Identities = 99/113 (87%)
Strand = Plus / Minus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| ||||| |||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 1212595 agatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgc 1212536
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1212535 ttcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcag 1212483
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 979 tttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattaga 1038
||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 1211739 tttgttgatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagg 1211680
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcagg 1075
|||||||||||||| || ||||||||||| |||||||
Sbjct: 1211679 gatttcctggtgcaatcaaaggagttctcggctcagg 1211643
Score = 109 bits (55), Expect = 5e-021
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 1213271 cagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctcaag 1213212
Query: 207 gacgtcatttgtaaaactc 225
||| || ||||||||||||
Sbjct: 1213211 gacctcctttgtaaaactc 1213193
Score = 109 bits (55), Expect = 5e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 837 ggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacgga 896
|||||||||||| ||||||||||| ||||| || || || |||||||| |||||||| ||
Sbjct: 1211952 ggttgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactga 1211893
Query: 897 taatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacat 956
|| || |||||||| ||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct: 1211892 caacgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacat 1211833
Query: 957 gac 959
|||
Sbjct: 1211832 gac 1211830
Score = 91.7 bits (46), Expect = 1e-015
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 415 tacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacc 474
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 1212745 tacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcact 1212686
Query: 475 cttgag 480
||||||
Sbjct: 1212685 cttgag 1212680
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 1210995 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 1210936
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 1210935 acttggtgctgattgcgagattt 1210913
Score = 75.8 bits (38), Expect = 7e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 1213891 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 1213832
Query: 121 at 122
||
Sbjct: 1213831 at 1213830
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
|||||||||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 1212358 tcagcaattgaaacttgtgattgactctatcaactgggcatttagacatacagagagaaa 1212299
Query: 648 tattgcagagactgg 662
|| |||||||||||
Sbjct: 1212298 catcgcagagactgg 1212284
Score = 56.0 bits (28), Expect = 6e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacat 56
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct: 1214547 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacat 1214492
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 159 bits (80), Expect = 6e-036
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
|||||||||||||||||||| | || ||||| ||||||||||||||||| || ||||||
Sbjct: 13267826 agatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaagctgaagat 13267885
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
| ||||| | || || |||||||| || || |||||||||||| |||||| ||| |||
Sbjct: 13267886 ctaccacacattgggaaacagtttgttcctcctatgatggatcctattcttgctgactat 13267945
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
||||||||||| |||||||| ||||| ||||||||||||||| ||||||| || |||||
Sbjct: 13267946 gctagaaatgttcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcata 13268005
Query: 409 aacaagta 416
||||||||
Sbjct: 13268006 aacaagta 13268013
Score = 149 bits (75), Expect = 5e-033
Identities = 123/139 (88%)
Strand = Plus / Plus
Query: 697 caggcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagag 756
||||| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 13268750 caggcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagag 13268809
Query: 757 atttttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtg 816
|| |||||||| || |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 13268810 atctttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtg 13268869
Query: 817 ctacaacacttgttttgtg 835
|| || ||||| |||||||
Sbjct: 13268870 ctgcagcacttattttgtg 13268888
Score = 129 bits (65), Expect = 5e-027
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 1073 aggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaac 1132
||||||| |||||| | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct: 13269716 aggataataaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaac 13269775
Query: 1133 gaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagatt 1192
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 13269776 gaatgcttgccattccagggcttattgccccaagcgaattacaagatgagatggttgatt 13269835
Query: 1193 c 1193
|
Sbjct: 13269836 c 13269836
Score = 127 bits (64), Expect = 2e-026
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| ||||| |||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 13268324 agatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgc 13268383
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13268384 ttcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcag 13268436
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 979 tttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattaga 1038
||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 13269180 tttgttgatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagg 13269239
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcagg 1075
|||||||||||||| || ||||||||||| |||||||
Sbjct: 13269240 gatttcctggtgcaatcaaaggagttctcggctcagg 13269276
Score = 109 bits (55), Expect = 5e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 837 ggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacgga 896
|||||||||||| ||||||||||| ||||| || || || |||||||| |||||||| ||
Sbjct: 13268967 ggttgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactga 13269026
Query: 897 taatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacat 956
|| || |||||||| ||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct: 13269027 caacgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacat 13269086
Query: 957 gac 959
|||
Sbjct: 13269087 gac 13269089
Score = 109 bits (55), Expect = 5e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 13267648 cagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctcaag 13267707
Query: 207 gacgtcatttgtaaaactc 225
||| || ||||||||||||
Sbjct: 13267708 gacctcctttgtaaaactc 13267726
Score = 91.7 bits (46), Expect = 1e-015
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 415 tacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacc 474
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 13268174 tacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcact 13268233
Query: 475 cttgag 480
||||||
Sbjct: 13268234 cttgag 13268239
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 13269924 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 13269983
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 13269984 acttggtgctgattgcgagattt 13270006
Score = 75.8 bits (38), Expect = 7e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 13267028 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 13267087
Query: 121 at 122
||
Sbjct: 13267088 at 13267089
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
|||||||||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 13268561 tcagcaattgaaacttgtgattgactctatcaactgggcatttagacatacagagagaaa 13268620
Query: 648 tattgcagagactgg 662
|| |||||||||||
Sbjct: 13268621 catcgcagagactgg 13268635
Score = 56.0 bits (28), Expect = 6e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacat 56
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct: 13266372 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacat 13266427
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 159 bits (80), Expect = 6e-036
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
|||||||||||||||||||| | || ||||| ||||||||||||||||| || ||||||
Sbjct: 13460188 agatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaagctgaagat 13460247
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
| ||||| | || || |||||||| || || |||||||||||| |||||| ||| |||
Sbjct: 13460248 ctaccacacattgggaaacagtttgttcctcctatgatggatcctattcttgctgactat 13460307
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
||||||||||| |||||||| ||||| ||||||||||||||| ||||||| || |||||
Sbjct: 13460308 gctagaaatgttcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcata 13460367
Query: 409 aacaagta 416
||||||||
Sbjct: 13460368 aacaagta 13460375
Score = 149 bits (75), Expect = 5e-033
Identities = 123/139 (88%)
Strand = Plus / Plus
Query: 697 caggcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagag 756
||||| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 13461112 caggcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagag 13461171
Query: 757 atttttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtg 816
|| |||||||| || |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 13461172 atctttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtg 13461231
Query: 817 ctacaacacttgttttgtg 835
|| || ||||| |||||||
Sbjct: 13461232 ctgcagcacttattttgtg 13461250
Score = 129 bits (65), Expect = 5e-027
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 1073 aggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaac 1132
||||||| |||||| | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct: 13462078 aggataataaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaac 13462137
Query: 1133 gaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagatt 1192
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 13462138 gaatgcttgccattccagggcttattgccccaagcgaattacaagatgagatggttgatt 13462197
Query: 1193 c 1193
|
Sbjct: 13462198 c 13462198
Score = 127 bits (64), Expect = 2e-026
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| ||||| |||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 13460686 agatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgc 13460745
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13460746 ttcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcag 13460798
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 979 tttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattaga 1038
||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 13461542 tttgttgatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagg 13461601
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcagg 1075
|||||||||||||| || ||||||||||| |||||||
Sbjct: 13461602 gatttcctggtgcaatcaaaggagttctcggctcagg 13461638
Score = 109 bits (55), Expect = 5e-021
Identities = 106/123 (86%)
Strand = Plus / Plus
Query: 837 ggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacgga 896
|||||||||||| ||||||||||| ||||| || || || |||||||| |||||||| ||
Sbjct: 13461329 ggttgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactga 13461388
Query: 897 taatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacat 956
|| || |||||||| ||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct: 13461389 caacgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacat 13461448
Query: 957 gac 959
|||
Sbjct: 13461449 gac 13461451
Score = 109 bits (55), Expect = 5e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 13460010 cagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctcaag 13460069
Query: 207 gacgtcatttgtaaaactc 225
||| || ||||||||||||
Sbjct: 13460070 gacctcctttgtaaaactc 13460088
Score = 91.7 bits (46), Expect = 1e-015
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 415 tacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacc 474
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 13460536 tacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcact 13460595
Query: 475 cttgag 480
||||||
Sbjct: 13460596 cttgag 13460601
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 13462286 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 13462345
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 13462346 acttggtgctgattgcgagattt 13462368
Score = 75.8 bits (38), Expect = 7e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 13459390 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 13459449
Query: 121 at 122
||
Sbjct: 13459450 at 13459451
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
|||||||||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 13460923 tcagcaattgaaacttgtgattgactctatcaactgggcatttagacatacagagagaaa 13460982
Query: 648 tattgcagagactgg 662
|| |||||||||||
Sbjct: 13460983 catcgcagagactgg 13460997
Score = 56.0 bits (28), Expect = 6e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacat 56
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct: 13458734 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacat 13458789
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 159 bits (80), Expect = 6e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
|||||||||||||||||||| | || ||||| ||||||||||||||||| || ||||||
Sbjct: 36001462 agatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaagctgaagat 36001403
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
| ||||| | || || |||||||| || || |||||||||||| |||||| ||| |||
Sbjct: 36001402 ctaccacacattgggaaacagtttgttcctcctatgatggatcctattcttgctgactat 36001343
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
||||||||||| |||||||| ||||| ||||||||||||||| ||||||| || |||||
Sbjct: 36001342 gctagaaatgttcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcata 36001283
Query: 409 aacaagta 416
||||||||
Sbjct: 36001282 aacaagta 36001275
Score = 149 bits (75), Expect = 5e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 697 caggcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagag 756
||||| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 36000538 caggcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagag 36000479
Query: 757 atttttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtg 816
|| |||||||| || |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 36000478 atctttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtg 36000419
Query: 817 ctacaacacttgttttgtg 835
|| || ||||| |||||||
Sbjct: 36000418 ctgcagcacttattttgtg 36000400
Score = 129 bits (65), Expect = 5e-027
Identities = 107/121 (88%)
Strand = Plus / Minus
Query: 1073 aggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaac 1132
||||||| |||||| | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct: 35999572 aggataataaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaac 35999513
Query: 1133 gaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagatt 1192
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 35999512 gaatgcttgccattccagggcttattgccccaagcgaattacaagatgagatggttgatt 35999453
Query: 1193 c 1193
|
Sbjct: 35999452 c 35999452
Score = 127 bits (64), Expect = 2e-026
Identities = 99/113 (87%)
Strand = Plus / Minus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| ||||| |||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 36000964 agatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgc 36000905
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 36000904 ttcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcag 36000852
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 979 tttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattaga 1038
||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 36000108 tttgttgatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagg 36000049
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcagg 1075
|||||||||||||| || ||||||||||| |||||||
Sbjct: 36000048 gatttcctggtgcaatcaaaggagttctcggctcagg 36000012
Score = 109 bits (55), Expect = 5e-021
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 36001640 cagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctcaag 36001581
Query: 207 gacgtcatttgtaaaactc 225
||| || ||||||||||||
Sbjct: 36001580 gacctcctttgtaaaactc 36001562
Score = 109 bits (55), Expect = 5e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 837 ggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacgga 896
|||||||||||| ||||||||||| ||||| || || || |||||||| |||||||| ||
Sbjct: 36000321 ggttgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactga 36000262
Query: 897 taatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacat 956
|| || |||||||| ||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct: 36000261 caacgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacat 36000202
Query: 957 gac 959
|||
Sbjct: 36000201 gac 36000199
Score = 91.7 bits (46), Expect = 1e-015
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 415 tacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacc 474
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 36001114 tacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcact 36001055
Query: 475 cttgag 480
||||||
Sbjct: 36001054 cttgag 36001049
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 35999364 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 35999305
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 35999304 acttggtgctgattgcgagattt 35999282
Score = 75.8 bits (38), Expect = 7e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 36002260 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 36002201
Query: 121 at 122
||
Sbjct: 36002200 at 36002199
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
|||||||||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 36000727 tcagcaattgaaacttgtgattgactctatcaactgggcatttagacatacagagagaaa 36000668
Query: 648 tattgcagagactgg 662
|| |||||||||||
Sbjct: 36000667 catcgcagagactgg 36000653
Score = 56.0 bits (28), Expect = 6e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacat 56
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct: 36002916 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacat 36002861
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 159 bits (80), Expect = 6e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
|||||||||||||||||||| | || ||||| ||||||||||||||||| || ||||||
Sbjct: 35911332 agatctgtcaagagggaaacattgaaattgattgagacttttgtggacaaagctgaagat 35911273
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
| ||||| | || || |||||||| || || |||||||||||| |||||| ||| |||
Sbjct: 35911272 ctaccacacattgggaaacagtttgttcctcctatgatggatcctattcttgctgactat 35911213
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
||||||||||| |||||||| ||||| ||||||||||||||| ||||||| || |||||
Sbjct: 35911212 gctagaaatgttcccgatgctagggaatctgaagttctgtccctgtttgcgacgatcata 35911153
Query: 409 aacaagta 416
||||||||
Sbjct: 35911152 aacaagta 35911145
Score = 149 bits (75), Expect = 5e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 697 caggcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagag 756
||||| |||||||||||||| |||||||||||||| || ||||||| ||||| ||||||
Sbjct: 35910408 caggcctcaggattccaaaatcaattctacaaaacttattttttgaatattgaacaagag 35910349
Query: 757 atttttgcagtcctcacagacacattccataaacctggtttcaagcttcatgtttcggtg 816
|| |||||||| || |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 35910348 atctttgcagttctgacagacacattccacaagcctggtttcaagcttcatgttttggtg 35910289
Query: 817 ctacaacacttgttttgtg 835
|| || ||||| |||||||
Sbjct: 35910288 ctgcagcacttattttgtg 35910270
Score = 129 bits (65), Expect = 5e-027
Identities = 107/121 (88%)
Strand = Plus / Minus
Query: 1073 aggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaac 1132
||||||| |||||| | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct: 35909442 aggataataaggatttgtatgctgaagaggctgctgcacaaagagagagggagcgtcaac 35909383
Query: 1133 gaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagatt 1192
|||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 35909382 gaatgcttgccattccagggcttattgccccaagcgaattacaagatgagatggttgatt 35909323
Query: 1193 c 1193
|
Sbjct: 35909322 c 35909322
Score = 127 bits (64), Expect = 2e-026
Identities = 99/113 (87%)
Strand = Plus / Minus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| ||||| |||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 35910834 agatgatcactaaaaactttgaagattacccggagcatcgcctcaaatttttctctttgc 35910775
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 35910774 ttcgtgcgattggcacccattgcttccaagcattaattcagctttcaagtcag 35910722
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 979 tttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattaga 1038
||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 35909978 tttgttgatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagg 35909919
Query: 1039 gatttcctggtgcagtcgaaggagttctcagctcagg 1075
|||||||||||||| || ||||||||||| |||||||
Sbjct: 35909918 gatttcctggtgcaatcaaaggagttctcggctcagg 35909882
Score = 109 bits (55), Expect = 5e-021
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 35911510 cagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctcaag 35911451
Query: 207 gacgtcatttgtaaaactc 225
||| || ||||||||||||
Sbjct: 35911450 gacctcctttgtaaaactc 35911432
Score = 109 bits (55), Expect = 5e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 837 ggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacgga 896
|||||||||||| ||||||||||| ||||| || || || |||||||| |||||||| ||
Sbjct: 35910191 ggttgatggtctgacggagcctctctgggatgcatcctcagtaccataccaatatactga 35910132
Query: 897 taatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacat 956
|| || |||||||| ||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct: 35910131 caacgctatgtttgtccgagattacacaataaaacttttaggttcatcatttcccaacat 35910072
Query: 957 gac 959
|||
Sbjct: 35910071 gac 35910069
Score = 91.7 bits (46), Expect = 1e-015
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 415 tacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacc 474
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 35910984 tacaaaggtgaaatgcttgaagacgtgcctcgcatatttgaggctgttttccagtgcact 35910925
Query: 475 cttgag 480
||||||
Sbjct: 35910924 cttgag 35910919
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 35909234 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 35909175
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 35909174 acttggtgctgattgcgagattt 35909152
Score = 75.8 bits (38), Expect = 7e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
|||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 35912130 cagacaaacacaagtgttgctagctcacttggaccacactttttcccgcaaatttcccta 35912071
Query: 121 at 122
||
Sbjct: 35912070 at 35912069
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
|||||||||||| |||||||| || || || || ||||| || |||||||||||||||||
Sbjct: 35910597 tcagcaattgaaacttgtgattgactctatcaactgggcatttagacatacagagagaaa 35910538
Query: 648 tattgcagagactgg 662
|| |||||||||||
Sbjct: 35910537 catcgcagagactgg 35910523
Score = 56.0 bits (28), Expect = 6e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacat 56
|||| ||| |||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct: 35912786 agccaaagcattgatatcctgaagaaccaggatgttattagatctgttcttaacat 35912731
>gb|AU095247.1|AU095247 AU095247 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60917, mRNA sequence
Length = 466
Score = 81.8 bits (41), Expect = 1e-012
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 94 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 153
Query: 1338 acatgatgctgattccaagattt 1360
|| || |||||||| | ||||||
Sbjct: 154 acttggtgctgattgcgagattt 176
>gb|CF308007.1|CF308007 ABF--01-K11.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group) cDNA
clone ABF--01-K11, mRNA sequence
Length = 423
Score = 79.8 bits (40), Expect = 4e-012
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 1281 agttttcttccagggtggtgaaag---gtggctgctgtaattttatttttggttacctcc 1337
|||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 20 agttctcttccagggtggtgaaagaaggtgcctgctgtaattttattttcggttacctcc 79
Query: 1338 acatgatgctgatt 1351
|| || ||||||||
Sbjct: 80 acttggtgctgatt 93
>gb|CF308008.1|CF308008 ABF--01-K11.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group) cDNA
clone ABF--01-K11, mRNA sequence
Length = 461
Score = 71.9 bits (36), Expect = 1e-009
Identities = 65/74 (87%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 1281 agttttcttccagggtggtgaaa---ggtggctgctgtaattttatttttggttacctcc 1337
|||||| |||||||||||||||| |||| |||| ||||||||||||| ||||||||||
Sbjct: 413 agttttattccagggtggtgaaaaaaggtgcctgcggtaattttattttgggttacctcc 354
Query: 1338 acatgatgctgatt 1351
|| || ||||||||
Sbjct: 353 acttggtgctgatt 340
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,233,735
Number of Sequences: 438736
Number of extensions: 2233735
Number of successful extensions: 10661
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10500
Number of HSP's gapped (non-prelim): 130
length of query: 1599
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1577
effective length of database: 2,790,767,724
effective search space: 4401040700748
effective search space used: 4401040700748
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)