BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4679577.2.1
(833 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_466626.1| Oryza sativa (japonica cultivar-group), mRNA 755 0.0
dbj|AK064754.1| Oryza sativa (japonica cultivar-group) cDNA... 747 0.0
dbj|AP005001.1| Oryza sativa (japonica cultivar-group) chro... 505 e-140
dbj|AP004111.3| Oryza sativa (japonica cultivar-group) geno... 505 e-140
gb|AACV01004867.1| Oryza sativa (japonica cultivar-group) c... 505 e-140
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 505 e-140
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 505 e-140
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 505 e-140
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 505 e-140
gb|AU082745.1|AU082745 AU082745 Rice mature leaf Oryza sati... 496 e-137
gb|AU056965.1|AU056965 AU056965 Oryza sativa mature leaf Ni... 452 e-124
gb|CA754096.1|CA754096 BR040009000_PLATE_C03_19_020.ab1 OA ... 448 e-123
gb|AU056947.1|AU056947 AU056947 Oryza sativa mature leaf Ni... 250 1e-063
gb|AU082109.1|AU082109 AU082109 Rice panicle at flowering s... 188 3e-045
dbj|AB096140.1| Oryza sativa (japonica cultivar-group) chia... 188 3e-045
dbj|AK071013.1| Oryza sativa (japonica cultivar-group) cDNA... 188 3e-045
dbj|AK104242.1| Oryza sativa (japonica cultivar-group) cDNA... 188 3e-045
dbj|AK104426.1| Oryza sativa (japonica cultivar-group) cDNA... 188 3e-045
gb|AACV01010039.1| Oryza sativa (japonica cultivar-group) c... 188 3e-045
ref|XM_473013.1| Oryza sativa (japonica cultivar-group), p... 188 3e-045
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 188 3e-045
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 188 3e-045
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 188 3e-045
emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromoso... 188 3e-045
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 188 3e-045
gb|CF311468.1|CF311468 ABF--06-L04.b1 ABF3-overexpressing t... 135 4e-029
gb|AU082747.1|AU082747 AU082747 Rice mature leaf Oryza sati... 121 6e-025
gb|C19108.1|C19108 C19108 Rice green shoot Oryza sativa (ja... 117 1e-023
gb|CB683115.1|CB683115 OSJNEf11B13.f OSJNEf Oryza sativa (j... 117 1e-023
gb|CF277595.1|CF277595 14ETL--03-D06.b1 Rice etiolated leaf... 117 1e-023
gb|CF277868.1|CF277868 14ETL--03-J01.b1 Rice etiolated leaf... 117 1e-023
gb|CF280049.1|CF280049 14ETL--06-J06.b1 Rice etiolated leaf... 117 1e-023
gb|CF310438.1|CF310438 ABF--05-B10.b1 ABF3-overexpressing t... 117 1e-023
gb|CF310877.1|CF310877 ABF--05-M16.b1 ABF3-overexpressing t... 117 1e-023
gb|CF310948.1|CF310948 ABF--05-O14.b1 ABF3-overexpressing t... 117 1e-023
dbj|AB003194.1| Oryza sativa (japonica cultivar-group) mRNA... 117 1e-023
dbj|AB054687.1| Oryza sativa (japonica cultivar-group) Cht4... 117 1e-023
dbj|AK060363.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-023
dbj|AK099973.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-023
gb|AACV01010037.1| Oryza sativa (japonica cultivar-group) c... 117 1e-023
ref|XM_473009.1| Oryza sativa (japonica cultivar-group), p... 117 1e-023
gb|CF311469.1|CF311469 ABF--06-L04.g1 ABF3-overexpressing t... 111 6e-022
gb|CB654174.1|CB654174 OSJNEc05O21.r OSJNEc Oryza sativa (j... 109 2e-021
gb|CF281716.1|CF281716 14ETL--08-O04.b1 Rice etiolated leaf... 103 1e-019
gb|CF310609.1|CF310609 ABF--05-F17.b1 ABF3-overexpressing t... 103 1e-019
gb|CF276539.1|CF276539 14ETL--01-L15.g1 Rice etiolated leaf... 101 6e-019
gb|AU090552.1|AU090552 AU090552 Rice panicle at flowering s... 98 9e-018
gb|CF281458.1|CF281458 14ETL--08-I08.b1 Rice etiolated leaf... 98 9e-018
gb|AU082112.1|AU082112 AU082112 Rice panicle at flowering s... 90 2e-015
gb|CF282330.1|CF282330 14ETL--09-M19.b1 Rice etiolated leaf... 90 2e-015
gb|AU089729.1|AU089729 AU089729 Rice green shoot Oryza sati... 86 4e-014
gb|AU096318.1|AU096318 AU096318 Rice green shoot Oryza sati... 86 4e-014
gb|CF277596.1|CF277596 14ETL--03-D06.g1 Rice etiolated leaf... 86 4e-014
gb|CF281459.1|CF281459 14ETL--08-I08.g1 Rice etiolated leaf... 86 4e-014
gb|CF281717.1|CF281717 14ETL--08-O04.g1 Rice etiolated leaf... 86 4e-014
gb|CV732267.1|CV732267 FLO--06-K18.g1 Rice flower lambda ph... 86 4e-014
gb|CV733602.1|CV733602 FLO--08-J10.g1 Rice flower lambda ph... 86 4e-014
gb|CF277348.1|CF277348 14ETL--02-N14.b1 Rice etiolated leaf... 80 2e-012
gb|CV733601.1|CV733601 FLO--08-J10.b1 Rice flower lambda ph... 76 3e-011
gb|CF276538.1|CF276538 14ETL--01-L15.b1 Rice etiolated leaf... 72 5e-010
gb|CV734430.1|CV734430 FLO--09-M18.b1 Rice flower lambda ph... 70 2e-009
gb|CV734102.1|CV734102 FLO--09-F02.g1 Rice flower lambda ph... 66 3e-008
gb|CV732266.1|CV732266 FLO--06-K18.b1 Rice flower lambda ph... 64 1e-007
gb|D47777.1|D47777 RICS13463A Rice green shoot Oryza sativa... 62 5e-007
gb|C73020.1|C73020 C73020 Rice panicle at flowering stage O... 62 5e-007
dbj|D16222.1|RICCHT2 Oryza sativa (japonica cultivar-group)... 56 3e-005
dbj|AK108949.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AC132492.3| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|AACV01012113.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
emb|X56787.1|OSLMRNAC O.sativa L. mRNA for endochitinase 56 3e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|CV729397.1|CV729397 FLO--02-E08.b1 Rice flower lambda ph... 54 1e-004
dbj|D16223.1|RICCHT3 Oryza sativa (japonica cultivar-group)... 52 5e-004
dbj|AK061280.1| Oryza sativa (japonica cultivar-group) cDNA... 52 5e-004
gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 ... 52 5e-004
gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 ... 52 5e-004
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 52 5e-004
dbj|AP003685.3| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|AACV01006925.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
gb|AACV01014964.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA 52 5e-004
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 52 5e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|C72797.1|C72797 C72797 Rice panicle at flowering stage O... 50 0.002
gb|BP185058.1|BP185058 BP185058 pNS rice panicle cDNA, flow... 50 0.002
dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11... 50 0.002
emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC O... 50 0.002
ref|NT_107146.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AACV01022031.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01022034.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01024294.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chi... 50 0.002
ref|NM_197598.1| Oryza sativa (japonica cultivar-group) put... 50 0.002
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 50 0.002
gb|CH401273.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CA754928.1|CA754928 BR030009000_PLATE_A07_49_051.ab1 OA ... 48 0.008
dbj|AK063062.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
gb|C98575.1|C98575 C98575 Rice panicle at flowering stage O... 46 0.030
gb|CB672878.1|CB672878 OSJNEe07C10.r OSJNEe Oryza sativa (j... 46 0.030
gb|CB684719.1|CB684719 OSJNEf14I06.f OSJNEf Oryza sativa (j... 46 0.030
gb|CB684720.1|CB684720 OSJNEf14I06.r OSJNEf Oryza sativa (j... 46 0.030
gb|CF323069.1|CF323069 HDN--02-N11.g1 OsHDAC1-overexpressin... 46 0.030
dbj|D16221.1|RICCHT1 Oryza sativa (japonica cultivar-group)... 46 0.030
dbj|AK061042.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK099339.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK104020.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK105798.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
gb|AACV01014965.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
emb|X56063.1|OSENDO O.sativa mRNA for endochitinase 46 0.030
gb|D39758.1|D39758 RICS1345A Rice shoot Oryza sativa (japon... 44 0.12
gb|AU077766.1|AU077766 AU077766 Rice cDNA from young root O... 44 0.12
gb|AU090548.1|AU090548 AU090548 Rice panicle at flowering s... 44 0.12
gb|CF326349.1|CF326349 JMT1--05-N01.g1 AtJMT-overexpressing... 44 0.12
gb|AU097549.2|AU097549 AU097549 Rice shoot Oryza sativa (ja... 44 0.12
gb|AY378172.1| Oryza sativa (japonica cultivar-group) OsmCh... 44 0.12
gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 ... 44 0.12
gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 ... 44 0.12
gb|AACV01006871.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
ref|NT_107193.1| Oryza sativa (japonica cultivar-group) 44 0.12
dbj|AK120995.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.47
dbj|AP003948.2| Oryza sativa (japonica cultivar-group) geno... 42 0.47
gb|AACV01000748.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
gb|AACV01018939.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.47
ref|XM_483583.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.47
ref|NM_183568.1| Oryza sativa (japonica cultivar-group), p... 42 0.47
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 42 0.47
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.47
dbj|AP002070.1| Oryza sativa (japonica cultivar-group) geno... 42 0.47
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.47
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.47
>ref|XM_466626.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 976
Score = 755 bits (381), Expect = 0.0
Identities = 591/661 (89%)
Strand = Plus / Plus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 203 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 262
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 263 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 322
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 323 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 382
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 383 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 442
Query: 254 gagaccataaagttctgctacatcaacgagatcgacgggccgagcaagaactactgcgac 313
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 443 gagaccataaagttctgctacatcgaggagatcgacggaccgagcaagaactactgcgac 502
Query: 314 cggaacaacacgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctg 373
|| | |||||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 503 gagacgagcacgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctg 562
Query: 374 cagatctcctggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctg 433
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 563 cagatctcgtggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctg 622
Query: 434 ggcgaccccgacgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtac 493
|||||||| |||||||||||| | ||| ||||||| ||||||| | ||||||||||||
Sbjct: 623 ggcgacccggacgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtac 682
Query: 494 tggatgaacaacgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgg 553
|||| ||||||||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct: 683 tggaccaacaacgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgc 742
Query: 554 gccatcaacggcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtc 613
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct: 743 gccatcaacggcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtc 802
Query: 614 gcctactacaagcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgc 673
||||||||| |||||||||||||| | |||||||||||||| |||| |||||||||||||
Sbjct: 803 gcctactaccagcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgc 862
Query: 674 t 674
|
Sbjct: 863 t 863
>dbj|AK064754.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G01, full
insert sequence
Length = 976
Score = 747 bits (377), Expect = 0.0
Identities = 590/661 (89%)
Strand = Plus / Plus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 203 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 262
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 263 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 322
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 323 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 382
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 383 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 442
Query: 254 gagaccataaagttctgctacatcaacgagatcgacgggccgagcaagaactactgcgac 313
|||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||
Sbjct: 443 gagaccataaagttctgctacatcgaggagatcgacggaccgagcaagaaccactgcgac 502
Query: 314 cggaacaacacgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctg 373
|| | |||||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 503 gagacgagcacgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctg 562
Query: 374 cagatctcctggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctg 433
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 563 cagatctcgtggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctg 622
Query: 434 ggcgaccccgacgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtac 493
|||||||| |||||||||||| | ||| ||||||| ||||||| | ||||||||||||
Sbjct: 623 ggcgacccggacgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtac 682
Query: 494 tggatgaacaacgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgg 553
|||| ||||||||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct: 683 tggaccaacaacgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgc 742
Query: 554 gccatcaacggcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtc 613
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct: 743 gccatcaacggcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtc 802
Query: 614 gcctactacaagcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgc 673
||||||||| |||||||||||||| | |||||||||||||| |||| |||||||||||||
Sbjct: 803 gcctactaccagcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgc 862
Query: 674 t 674
|
Sbjct: 863 t 863
>dbj|AP005001.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0043C06, ***
SEQUENCING IN PROGRESS ***
Length = 159465
Score = 505 bits (255), Expect = e-140
Identities = 372/411 (90%)
Strand = Plus / Minus
Query: 264 agttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaaca 323
|||||||||||||| | ||||||||||| ||||||||||||||||||||| || | ||
Sbjct: 64777 agttctgctacatcgaggagatcgacggaccgagcaagaactactgcgacgagacgagca 64718
Query: 324 cgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcct 383
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 64717 cgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctcgt 64658
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 64657 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 64598
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 64597 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 64538
Query: 504 acgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaacg 563
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 64537 acgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaacg 64478
Query: 564 gcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactaca 623
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 64477 gcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactacc 64418
Query: 624 agcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 64417 agcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 64367
Score = 250 bits (126), Expect = 1e-063
Identities = 219/250 (87%)
Strand = Plus / Minus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 65116 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 65057
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 65056 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 64997
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 64996 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 64937
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 64936 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 64877
Query: 254 gagaccataa 263
||||||||||
Sbjct: 64876 gagaccataa 64867
>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1058_F07
Length = 95841
Score = 505 bits (255), Expect = e-140
Identities = 372/411 (90%)
Strand = Plus / Minus
Query: 264 agttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaaca 323
|||||||||||||| | ||||||||||| ||||||||||||||||||||| || | ||
Sbjct: 73545 agttctgctacatcgaggagatcgacggaccgagcaagaactactgcgacgagacgagca 73486
Query: 324 cgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcct 383
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 73485 cgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctcgt 73426
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 73425 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 73366
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 73365 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 73306
Query: 504 acgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaacg 563
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 73305 acgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaacg 73246
Query: 564 gcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactaca 623
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 73245 gcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactacc 73186
Query: 624 agcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 73185 agcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 73135
Score = 250 bits (126), Expect = 1e-063
Identities = 219/250 (87%)
Strand = Plus / Minus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 73884 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 73825
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 73824 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 73765
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 73764 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 73705
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 73704 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 73645
Query: 254 gagaccataa 263
||||||||||
Sbjct: 73644 gagaccataa 73635
>gb|AACV01004867.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004867, whole
genome shotgun sequence
Length = 60967
Score = 505 bits (255), Expect = e-140
Identities = 372/411 (90%)
Strand = Plus / Plus
Query: 264 agttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaaca 323
|||||||||||||| | ||||||||||| ||||||||||||||||||||| || | ||
Sbjct: 54929 agttctgctacatcgaggagatcgacggaccgagcaagaactactgcgacgagacgagca 54988
Query: 324 cgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcct 383
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 54989 cgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctcgt 55048
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 55049 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 55108
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 55109 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 55168
Query: 504 acgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaacg 563
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 55169 acgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaacg 55228
Query: 564 gcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactaca 623
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 55229 gcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactacc 55288
Query: 624 agcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 55289 agcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 55339
Score = 250 bits (126), Expect = 1e-063
Identities = 219/250 (87%)
Strand = Plus / Plus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 54590 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 54649
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 54650 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 54709
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 54710 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 54769
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 54770 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 54829
Query: 254 gagaccataa 263
||||||||||
Sbjct: 54830 gagaccataa 54839
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 505 bits (255), Expect = e-140
Identities = 372/411 (90%)
Strand = Plus / Minus
Query: 264 agttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaaca 323
|||||||||||||| | ||||||||||| ||||||||||||||||||||| || | ||
Sbjct: 4947203 agttctgctacatcgaggagatcgacggaccgagcaagaactactgcgacgagacgagca 4947144
Query: 324 cgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcct 383
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 4947143 cgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctcgt 4947084
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 4947083 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 4947024
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 4947023 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 4946964
Query: 504 acgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaacg 563
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 4946963 acgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaacg 4946904
Query: 564 gcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactaca 623
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 4946903 gcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactacc 4946844
Query: 624 agcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 4946843 agcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 4946793
Score = 250 bits (126), Expect = 1e-063
Identities = 219/250 (87%)
Strand = Plus / Minus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 4947542 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 4947483
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 4947482 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 4947423
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 4947422 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 4947363
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 4947362 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 4947303
Query: 254 gagaccataa 263
||||||||||
Sbjct: 4947302 gagaccataa 4947293
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 505 bits (255), Expect = e-140
Identities = 372/411 (90%)
Strand = Plus / Minus
Query: 264 agttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaaca 323
|||||||||||||| | ||||||||||| ||||||||||||||||||||| || | ||
Sbjct: 10048795 agttctgctacatcgaggagatcgacggaccgagcaagaactactgcgacgagacgagca 10048736
Query: 324 cgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcct 383
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 10048735 cgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctcgt 10048676
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 10048675 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 10048616
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 10048615 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 10048556
Query: 504 acgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaacg 563
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 10048555 acgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaacg 10048496
Query: 564 gcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactaca 623
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 10048495 gcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactacc 10048436
Query: 624 agcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 10048435 agcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 10048385
Score = 250 bits (126), Expect = 1e-063
Identities = 219/250 (87%)
Strand = Plus / Minus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 10049134 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 10049075
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 10049074 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 10049015
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 10049014 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 10048955
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 10048954 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 10048895
Query: 254 gagaccataa 263
||||||||||
Sbjct: 10048894 gagaccataa 10048885
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 505 bits (255), Expect = e-140
Identities = 372/411 (90%)
Strand = Plus / Minus
Query: 264 agttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaaca 323
|||||||||||||| | ||||||||||| ||||||||||||||||||||| || | ||
Sbjct: 23501859 agttctgctacatcgaggagatcgacggaccgagcaagaactactgcgacgagacgagca 23501800
Query: 324 cgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcct 383
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 23501799 cgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctcgt 23501740
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 23501739 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 23501680
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 23501679 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 23501620
Query: 504 acgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaacg 563
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 23501619 acgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaacg 23501560
Query: 564 gcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactaca 623
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 23501559 gcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactacc 23501500
Query: 624 agcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 23501499 agcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 23501449
Score = 250 bits (126), Expect = 1e-063
Identities = 219/250 (87%)
Strand = Plus / Minus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 23502198 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 23502139
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 23502138 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 23502079
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 23502078 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 23502019
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 23502018 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 23501959
Query: 254 gagaccataa 263
||||||||||
Sbjct: 23501958 gagaccataa 23501949
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 505 bits (255), Expect = e-140
Identities = 372/411 (90%)
Strand = Plus / Minus
Query: 264 agttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaaca 323
|||||||||||||| | ||||||||||| ||||||||||||||||||||| || | ||
Sbjct: 23762961 agttctgctacatcgaggagatcgacggaccgagcaagaactactgcgacgagacgagca 23762902
Query: 324 cgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcct 383
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 23762901 cgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctcgt 23762842
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 23762841 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 23762782
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 23762781 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 23762722
Query: 504 acgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaacg 563
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 23762721 acgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaacg 23762662
Query: 564 gcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactaca 623
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 23762661 gcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactacc 23762602
Query: 624 agcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 23762601 agcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 23762551
Score = 250 bits (126), Expect = 1e-063
Identities = 219/250 (87%)
Strand = Plus / Minus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 23763300 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 23763241
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 23763240 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 23763181
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 23763180 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 23763121
Query: 194 accggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccac 253
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 23763120 accggctccgtcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaaccac 23763061
Query: 254 gagaccataa 263
||||||||||
Sbjct: 23763060 gagaccataa 23763051
>gb|AU082745.1|AU082745 AU082745 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21009, mRNA sequence
Length = 708
Score = 496 bits (250), Expect = e-137
Identities = 441/501 (88%), Gaps = 3/501 (0%)
Strand = Plus / Plus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 182 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 241
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| ||||||| || | |||| |||||
Sbjct: 242 gtcacgccggagttcttcgcggcgctcgtcgcccaggccgacgacggctgcgccgccaag 301
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgc 193
||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||
Sbjct: 302 ggcttctacacccgcgacgccttcctcaccgccgccggtggctacccttccttcggccgc 361
Query: 194 accggcaccgt-cgacgactccaagcgcgagatcgccgccttcttcggcaacgccaacca 252
|||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 362 accggctccgttcgacgactccaagcgcgagatcgccgccttcttcgcccacgccaacca 421
Query: 253 cgagaccataaagttctgctacatcaacgagatcgacgggccgagcaagaactactgcga 312
||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 422 cgagaccataaagttctgctacatcgaggagatcgacggaccgagcaagaactactgcga 481
Query: 313 ccggaacaacacgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgct 372
| || | |||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 482 cgagacgagcacgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgct 541
Query: 373 gcagatctcctggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 542 gcagatctcgtggaacttcaactacgggccggcggggcagagcatcgggttcgacgggct 601
Query: 433 gggcgaccccgacgcggtggcg-cgcagcgccgtgctcgcgttccgctccgcgctctggt 491
|||||| || |||||||||||| | ||| ||||||| |||||| | | ||||||||||
Sbjct: 602 gggcgaaccggacgcggtggcgaaggagccccgtgctggcgttcag-acggcgctctggt 660
Query: 492 actggatgaacaacgtgcacg 512
|||||| |||||||||||||
Sbjct: 661 actggancaacaacgtgcacg 681
>gb|AU056965.1|AU056965 AU056965 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21023_2Z, mRNA sequence
Length = 529
Score = 452 bits (228), Expect = e-124
Identities = 370/412 (89%), Gaps = 4/412 (0%)
Strand = Plus / Plus
Query: 266 ttctgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaa-cac 324
|||||||||||| | ||||||||||| |||||||||||||| |||||| || || |||
Sbjct: 12 ttctgctacatcgaggagatcgacggaccgagcaagaacta-tgcgacgagacgaagcac 70
Query: 325 gcagtggccgtgccaggcggggaaggggtact-acggccgcggcccgctgcagatctcct 383
||||||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |
Sbjct: 71 gcagtggccgtgcatggcggggaaggggtacttacgggcgcgggccgctgcagatctcgt 130
Query: 384 ggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccg 443
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 131 ggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgacccgg 190
Query: 444 acgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaaca 503
||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||||
Sbjct: 191 acgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaaca 250
Query: 504 acgtgc-acggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaac 562
|||||| ||| ||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 251 acgtgccacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaac 310
Query: 563 ggcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctactac 622
||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 311 ggcgcgctcgagtgcgacggcaagaaccccaccgccgtcagcaaccgcgtcgcctactac 370
Query: 623 aagcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
|||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 371 cagcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 422
>gb|CA754096.1|CA754096 BR040009000_PLATE_C03_19_020.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040009000_PLATE_C03_19_020.ab1 similar to (AF402937)
chitinase-B [Saccharum officinarum], mRNA sequence
Length = 548
Score = 448 bits (226), Expect = e-123
Identities = 321/353 (90%)
Strand = Plus / Plus
Query: 322 cacgcagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctc 381
|||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 15 cacgcagtggccgtgcatggcggggaaggggtactacgggcgcgggccgctgcagatctc 74
Query: 382 ctggaacttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccc 441
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 gtggaacttcaactacgggccggcggggcagagcatcgggttcgacgggctgggcgaccc 134
Query: 442 cgacgcggtggcgcgcagcgccgtgctcgcgttccgctccgcgctctggtactggatgaa 501
|||||||||||| | ||| ||||||| ||||||| | |||||||||||||||| ||
Sbjct: 135 ggacgcggtggcgaggagccccgtgctggcgttccagacggcgctctggtactggaccaa 194
Query: 502 caacgtgcacggggccatcgtctccggccagggcttcggcgccaccatccgggccatcaa 561
||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 195 caacgtgcacgacgccttcgtctccggccaggggttcggcgccaccatccgcgccatcaa 254
Query: 562 cggcgcgctcgagtgcgacggcaagaaccccaactccgtcaacaaccgcgtcgcctacta 621
|||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||
Sbjct: 255 cggcgcgctcgagtgcgacggcnagaaccccaccgccgtcagcaaccgcgtcgcctacta 314
Query: 622 caagcagttctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
| |||||||||||||| | |||||||||||||| |||| ||||||||||||||
Sbjct: 315 ccagcagttctgccagcagttcggcgtcgaccccggcagcaacctcacctgct 367
>gb|AU056947.1|AU056947 AU056947 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21009_2Z, mRNA sequence
Length = 324
Score = 250 bits (126), Expect = 1e-063
Identities = 176/193 (91%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcacggggccatcgtctccggccagggcttcggc 541
|||||||||||||||| ||||||||||||| || |||||||||||||||| ||||||
Sbjct: 30 gcgctctggtactggaccaacaacgtgcacgacgcnttcgtctccggccaggggttcggc 89
Query: 542 gccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaaccccaactccgtc 601
||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct: 90 gccaccatccgcgccatcaacggcgcgttcgagtgcgacggcaagaaccccaccgccgtc 149
Query: 602 aacaaccgcgtcgcctactacaagcagttctgccaggatttcggcgtcgacccgggcaac 661
| ||||||||||||||||||| |||||||||||||| | |||||||||||||| |||| |
Sbjct: 150 agcaaccgcgtcgcctactaccagcagttctgccagcagttcggcgtcgaccccggcagc 209
Query: 662 aacctcacctgct 674
|||||||||||||
Sbjct: 210 aacctcacctgct 222
>gb|AU082109.1|AU082109 AU082109 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1135, mRNA sequence
Length = 700
Score = 188 bits (95), Expect = 3e-045
Identities = 209/247 (84%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaagttc 268
||||||||||| |||||||| |||||||| | | ||| || || |||||| | | |
Sbjct: 50 gactccaagcgtgagatcgctgccttctttgcccacgtcactcatgagaccggacatatg 109
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 110 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 169
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 170 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 229
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 230 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 289
Query: 449 gtggcgc 455
|||||||
Sbjct: 290 gtggcgc 296
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 365 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 424
Query: 590 ccc 592
|||
Sbjct: 425 ccc 427
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 323 gcgctctggttctggatgaacaacgtgcac 352
>dbj|AB096140.1| Oryza sativa (japonica cultivar-group) chia4a mRNA for chitinase,
complete cds
Length = 1067
Score = 188 bits (95), Expect = 3e-045
Identities = 209/247 (84%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaagttc 268
||||||||||| |||||||| |||||||| | | ||| || || |||||| | | |
Sbjct: 426 gactccaagcgtgagatcgctgccttctttgcccacgtcactcatgagaccggacatatg 485
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 486 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 545
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 546 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 605
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 606 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 665
Query: 449 gtggcgc 455
|||||||
Sbjct: 666 gtggcgc 672
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 741 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 800
Query: 590 ccc 592
|||
Sbjct: 801 ccc 803
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 699 gcgctctggttctggatgaacaacgtgcac 728
>dbj|AK071013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080F19, full
insert sequence
Length = 1083
Score = 188 bits (95), Expect = 3e-045
Identities = 209/247 (84%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaagttc 268
||||||||||| |||||||| |||||||| | | ||| || || |||||| | | |
Sbjct: 442 gactccaagcgtgagatcgctgccttctttgcccacgtcactcatgagaccggacatatg 501
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 502 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 561
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 562 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 621
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 622 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 681
Query: 449 gtggcgc 455
|||||||
Sbjct: 682 gtggcgc 688
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 757 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 816
Query: 590 ccc 592
|||
Sbjct: 817 ccc 819
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 715 gcgctctggttctggatgaacaacgtgcac 744
>dbj|AK104242.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C08, full
insert sequence
Length = 1022
Score = 188 bits (95), Expect = 3e-045
Identities = 209/247 (84%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaagttc 268
||||||||||| |||||||| |||||||| | | ||| || || |||||| | | |
Sbjct: 441 gactccaagcgtgagatcgctgccttctttgcccacgtcactcatgagaccggacatatg 500
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 501 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 560
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 561 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 620
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 621 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 680
Query: 449 gtggcgc 455
|||||||
Sbjct: 681 gtggcgc 687
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 756 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 815
Query: 590 ccc 592
|||
Sbjct: 816 ccc 818
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 714 gcgctctggttctggatgaacaacgtgcac 743
>dbj|AK104426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G08, full
insert sequence
Length = 984
Score = 188 bits (95), Expect = 3e-045
Identities = 209/247 (84%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaagttc 268
||||||||||| |||||||| |||||||| | | ||| || || |||||| | | |
Sbjct: 441 gactccaagcgtgagatcgctgccttctttgcccacgtcactcatgagaccggacatatg 500
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 501 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 560
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 561 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 620
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 621 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 680
Query: 449 gtggcgc 455
|||||||
Sbjct: 681 gtggcgc 687
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 756 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 815
Query: 590 ccc 592
|||
Sbjct: 816 ccc 818
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 714 gcgctctggttctggatgaacaacgtgcac 743
>gb|AACV01010039.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010039, whole
genome shotgun sequence
Length = 18117
Score = 188 bits (95), Expect = 3e-045
Identities = 164/187 (87%)
Strand = Plus / Plus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 1713 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 1772
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 1773 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 1832
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 1833 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 1892
Query: 449 gtggcgc 455
|||||||
Sbjct: 1893 gtggcgc 1899
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 1968 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 2027
Query: 590 ccc 592
|||
Sbjct: 2028 ccc 2030
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 1926 gcgctctggttctggatgaacaacgtgcac 1955
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttctt 237
||||||||||| |||||||| ||||||||
Sbjct: 1565 gactccaagcgtgagatcgctgccttctt 1593
>ref|XM_473013.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 867
Score = 188 bits (95), Expect = 3e-045
Identities = 209/247 (84%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaagttc 268
||||||||||| |||||||| |||||||| | | ||| || || |||||| | | |
Sbjct: 406 gactccaagcgtgagatcgctgccttctttgcccacgtcactcatgagaccggacatatg 465
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 466 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 525
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 526 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 585
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 586 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 645
Query: 449 gtggcgc 455
|||||||
Sbjct: 646 gtggcgc 652
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 721 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 780
Query: 590 ccc 592
|||
Sbjct: 781 ccc 783
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 679 gcgctctggttctggatgaacaacgtgcac 708
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 188 bits (95), Expect = 3e-045
Identities = 164/187 (87%)
Strand = Plus / Minus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 2288583 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 2288524
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 2288523 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 2288464
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 2288463 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 2288404
Query: 449 gtggcgc 455
|||||||
Sbjct: 2288403 gtggcgc 2288397
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 2267672 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 2267613
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 2267612 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 2267566
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 2288328 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 2288269
Query: 590 ccc 592
|||
Sbjct: 2288268 ccc 2288266
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 2267474 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 2267415
Query: 590 ccc 592
|||
Sbjct: 2267414 ccc 2267412
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 2268260 cgacgactccaagcgcgagatcgctgccttcttcg 2268226
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 2288370 gcgctctggttctggatgaacaacgtgcac 2288341
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 2267516 gcgctctggttctggatgaacaacgtgcac 2267487
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 209 gactccaagcgcgagatcgccgccttctt 237
||||||||||| |||||||| ||||||||
Sbjct: 2288731 gactccaagcgtgagatcgctgccttctt 2288703
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 188 bits (95), Expect = 3e-045
Identities = 164/187 (87%)
Strand = Plus / Minus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 2579434 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 2579375
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 2579374 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 2579315
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 2579314 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 2579255
Query: 449 gtggcgc 455
|||||||
Sbjct: 2579254 gtggcgc 2579248
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 2558150 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 2558091
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 2558090 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 2558044
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 2579179 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 2579120
Query: 590 ccc 592
|||
Sbjct: 2579119 ccc 2579117
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 2557952 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 2557893
Query: 590 ccc 592
|||
Sbjct: 2557892 ccc 2557890
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 2558738 cgacgactccaagcgcgagatcgctgccttcttcg 2558704
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 2579221 gcgctctggttctggatgaacaacgtgcac 2579192
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 2557994 gcgctctggttctggatgaacaacgtgcac 2557965
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 209 gactccaagcgcgagatcgccgccttctt 237
||||||||||| |||||||| ||||||||
Sbjct: 2579582 gactccaagcgtgagatcgctgccttctt 2579554
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 188 bits (95), Expect = 3e-045
Identities = 164/187 (87%)
Strand = Plus / Minus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 21723533 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 21723474
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 21723473 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 21723414
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 21723413 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 21723354
Query: 449 gtggcgc 455
|||||||
Sbjct: 21723353 gtggcgc 21723347
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 21702249 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 21702190
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 21702189 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 21702143
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 21723278 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 21723219
Query: 590 ccc 592
|||
Sbjct: 21723218 ccc 21723216
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 21702051 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 21701992
Query: 590 ccc 592
|||
Sbjct: 21701991 ccc 21701989
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 21702837 cgacgactccaagcgcgagatcgctgccttcttcg 21702803
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 21723320 gcgctctggttctggatgaacaacgtgcac 21723291
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 21702093 gcgctctggttctggatgaacaacgtgcac 21702064
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 209 gactccaagcgcgagatcgccgccttctt 237
||||||||||| |||||||| ||||||||
Sbjct: 21723681 gactccaagcgtgagatcgctgccttctt 21723653
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
complete sequence
Length = 133856
Score = 188 bits (95), Expect = 3e-045
Identities = 164/187 (87%)
Strand = Plus / Minus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 74083 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 74024
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 74023 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 73964
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 73963 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 73904
Query: 449 gtggcgc 455
|||||||
Sbjct: 73903 gtggcgc 73897
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 53172 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 53113
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 53112 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 53066
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 73828 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 73769
Query: 590 ccc 592
|||
Sbjct: 73768 ccc 73766
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 52974 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 52915
Query: 590 ccc 592
|||
Sbjct: 52914 ccc 52912
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 53760 cgacgactccaagcgcgagatcgctgccttcttcg 53726
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 73870 gcgctctggttctggatgaacaacgtgcac 73841
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 53016 gcgctctggttctggatgaacaacgtgcac 52987
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 209 gactccaagcgcgagatcgccgccttctt 237
||||||||||| |||||||| ||||||||
Sbjct: 74231 gactccaagcgtgagatcgctgccttctt 74203
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 188 bits (95), Expect = 3e-045
Identities = 164/187 (87%)
Strand = Plus / Minus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 24684560 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 24684501
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 24684500 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 24684441
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggctgggcgaccccgacgcg 448
| |||||||||||| |||||||||| |||||| |||||||||||| | ||||| ||| |
Sbjct: 24684440 tacaactacgggcctgcggggcagaacatcgggttcgacgggctgagggacccggacagg 24684381
Query: 449 gtggcgc 455
|||||||
Sbjct: 24684380 gtggcgc 24684374
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 24663649 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 24663590
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 24663589 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 24663543
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 24684305 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 24684246
Query: 590 ccc 592
|||
Sbjct: 24684245 ccc 24684243
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 24663451 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 24663392
Query: 590 ccc 592
|||
Sbjct: 24663391 ccc 24663389
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 24664237 cgacgactccaagcgcgagatcgctgccttcttcg 24664203
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 24684347 gcgctctggttctggatgaacaacgtgcac 24684318
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 24663493 gcgctctggttctggatgaacaacgtgcac 24663464
Score = 42.1 bits (21), Expect = 0.47
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 209 gactccaagcgcgagatcgccgccttctt 237
||||||||||| |||||||| ||||||||
Sbjct: 24684708 gactccaagcgtgagatcgctgccttctt 24684680
>gb|CF311468.1|CF311468 ABF--06-L04.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L04, mRNA sequence
Length = 646
Score = 135 bits (68), Expect = 4e-029
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 209 gactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaagttc 268
||||||||||| |||||||| |||||||| | | ||| || || |||||| | | |
Sbjct: 459 gactccaagcgtgagatcgctgccttctttgcccacgtcactcatgagaccggacatatg 518
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||
Sbjct: 519 tgctacatcaacgagataaacggggcgagcatggactactgcgacaagaacaacaagcag 578
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
|||||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||
Sbjct: 579 tggccgtgccagccggggaagaagtactacgggcgcgggccgctgcagatctcgtggaac 638
Query: 389 ttcaacta 396
| ||||||
Sbjct: 639 tacaacta 646
>gb|AU082747.1|AU082747 AU082747 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21989, mRNA sequence
Length = 368
Score = 121 bits (61), Expect = 6e-025
Identities = 133/158 (84%)
Strand = Plus / Plus
Query: 14 gggtgccagtcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatc 73
||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||
Sbjct: 187 gggtgccaggcgggcccctgcgacgtgccggccaccaacgacgtgtccgtggcgagcatc 246
Query: 74 gtgacgccggccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaac 133
|| ||||||| ||||||| |||||| |||| || ||| || | |||| |||||
Sbjct: 247 gtcacgccggagttcttcgcggcgctcgtcgcccannccgacgacggctgcgccgccaag 306
Query: 134 ggcttctacacccgcgacgccttcctcgccgccgccgg 171
|||||||||||||||||| |||||||| ||||||||||
Sbjct: 307 ggcttctacacccgcgacnccttcctcaccgccgccgg 344
>gb|C19108.1|C19108 C19108 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S12594_5A, mRNA sequence
Length = 632
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 410 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 469
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 470 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 516
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 289 cgacgactccaagcgcgagatcgctgccttcttcg 323
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 566 gcgctctggttctggatgaacaacgtgcac 595
>gb|CB683115.1|CB683115 OSJNEf11B13.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11B13 5', mRNA sequence
Length = 862
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 385 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 444
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 445 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 491
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 583 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 642
Query: 590 ccc 592
|||
Sbjct: 643 ccc 645
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 264 cgacgactccaagcgcgagatcgctgccttcttcg 298
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 541 gcgctctggttctggatgaacaacgtgcac 570
>gb|CF277595.1|CF277595 14ETL--03-D06.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--03-D06, mRNA sequence
Length = 641
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 454 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 513
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 514 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 560
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 333 cgacgactccaagcgcgagatcgctgccttcttcg 367
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 611 gcgctctggttctggatgaacaacgtgcac 640
>gb|CF277868.1|CF277868 14ETL--03-J01.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--03-J01, mRNA sequence
Length = 606
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 420 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 479
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 480 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 526
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 299 cgacgactccaagcgcgagatcgctgccttcttcg 333
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 576 gcgctctggttctggatgaacaacgtgcac 605
>gb|CF280049.1|CF280049 14ETL--06-J06.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--06-J06, mRNA sequence
Length = 580
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 426 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 485
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 486 aacttcaactacgggccggcgggaaagaacatcggtttcgacgggct 532
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 305 cgacgactccaagcgcgagatcgctgccttcttcg 339
>gb|CF310438.1|CF310438 ABF--05-B10.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-B10, mRNA sequence
Length = 605
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 419 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 478
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 479 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 525
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 298 cgacgactccaagcgcgagatcgctgccttcttcg 332
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 575 gcgctctggttctggatgaacaacgtgcac 604
>gb|CF310877.1|CF310877 ABF--05-M16.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-M16, mRNA sequence
Length = 612
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 426 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 485
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 486 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 532
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 305 cgacgactccaagcgcgagatcgctgccttcttcg 339
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 582 gcgctctggttctggatgaacaacgtgcac 611
>gb|CF310948.1|CF310948 ABF--05-O14.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-O14, mRNA sequence
Length = 613
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 426 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 485
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 486 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 532
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 305 cgacgactccaagcgcgagatcgctgccttcttcg 339
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 583 gcgctctggttctggatgaacaacgtgcac 612
>dbj|AB003194.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase IIb,
complete cds
Length = 1036
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 410 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 469
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 470 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 516
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 608 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 667
Query: 590 ccc 592
|||
Sbjct: 668 ccc 670
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 289 cgacgactccaagcgcgagatcgctgccttcttcg 323
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 566 gcgctctggttctggatgaacaacgtgcac 595
>dbj|AB054687.1| Oryza sativa (japonica cultivar-group) Cht4 gene for PR-3 class IV
chitinase, complete cds
Length = 2172
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 1650 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 1709
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 1710 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 1756
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 1848 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 1907
Query: 590 ccc 592
|||
Sbjct: 1908 ccc 1910
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 1062 cgacgactccaagcgcgagatcgctgccttcttcg 1096
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 1806 gcgctctggttctggatgaacaacgtgcac 1835
>dbj|AK060363.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H09, full
insert sequence
Length = 1078
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 420 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 479
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 480 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 526
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 618 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 677
Query: 590 ccc 592
|||
Sbjct: 678 ccc 680
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 299 cgacgactccaagcgcgagatcgctgccttcttcg 333
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 576 gcgctctggttctggatgaacaacgtgcac 605
>dbj|AK099973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128C09, full
insert sequence
Length = 1059
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 421 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 480
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 481 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 527
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 619 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 678
Query: 590 ccc 592
|||
Sbjct: 679 ccc 681
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 300 cgacgactccaagcgcgagatcgctgccttcttcg 334
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 577 gcgctctggttctggatgaacaacgtgcac 606
>gb|AACV01010037.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010037, whole
genome shotgun sequence
Length = 7641
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 4101 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 4160
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 4161 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 4207
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 4299 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 4358
Query: 590 ccc 592
|||
Sbjct: 4359 ccc 4361
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 3513 cgacgactccaagcgcgagatcgctgccttcttcg 3547
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 4257 gcgctctggttctggatgaacaacgtgcac 4286
>ref|XM_473009.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 858
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 514 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 573
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 574 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 620
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 712 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 771
Query: 590 ccc 592
|||
Sbjct: 772 ccc 774
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 393 cgacgactccaagcgcgagatcgctgccttcttcg 427
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 670 gcgctctggttctggatgaacaacgtgcac 699
>gb|CF311469.1|CF311469 ABF--06-L04.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L04, mRNA sequence
Length = 510
Score = 111 bits (56), Expect = 6e-022
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 352 gtactacggccgcggcccgctgcagatctcctggaacttcaactacgggcccgcggggca 411
||||||||| ||||| |||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct: 509 gtactacgggcgcgggccgctgcagatctcgtggaactacaactacgggcctgcggggca 450
Query: 412 gagcatcggcttcgacgggctgggcgaccccgacgcggtggcgc 455
|| |||||| |||||||||||| | ||||| ||| ||||||||
Sbjct: 449 gaacatcgggttcgacgggctgagggacccggacagggtggcgc 406
Score = 101 bits (51), Expect = 6e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 337 caggggttcggcgccaccatccgggccatcaacggtgcgctcgagtgcaacggcaagaac 278
Query: 590 ccc 592
|||
Sbjct: 277 ccc 275
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 379 gcgctctggttctggatgaacaacgtgcac 350
>gb|CB654174.1|CB654174 OSJNEc05O21.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05O21 3', mRNA sequence
Length = 632
Score = 109 bits (55), Expect = 2e-021
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||| ||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 619 cagtgcccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 560
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 559 aacttcaactacgggccggcgggaaagaacatcgggttcgacgggct 513
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 421 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 362
Query: 590 ccc 592
|||
Sbjct: 361 ccc 359
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 463 gcgctctggttctggatgaacaacgtgcac 434
>gb|CF281716.1|CF281716 14ETL--08-O04.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--08-O04, mRNA sequence
Length = 609
Score = 103 bits (52), Expect = 1e-019
Identities = 95/108 (87%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 421 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 480
Query: 386 aacttcaactacgggcccgcggggcagagcatcggctt-cgacgggct 432
||||||||||||||||| ||||| ||| |||||| || |||||||||
Sbjct: 481 aacttcaactacgggccggcgggaaagaacatcgggttncgacgggct 528
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||| ||||||| ||||||||||
Sbjct: 300 cgacgactccaagcgcaagatcgctgccttcttcg 334
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 579 gcgctctggttctggatgaacaacgtgcac 608
>gb|CF310609.1|CF310609 ABF--05-F17.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-F17, mRNA sequence
Length = 613
Score = 103 bits (52), Expect = 1e-019
Identities = 95/108 (87%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 425 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 484
Query: 386 aacttcaactacgggcccgcggggcagagcatc-ggcttcgacgggct 432
||||||||||||||||| ||||| ||| |||| || |||||||||||
Sbjct: 485 aacttcaactacgggccggcgggaaagaacatcgggtttcgacgggct 532
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 304 cgacgactccaagcgcgagatcgctgccttcttcg 338
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 583 gcgctctggttctggatgaacaacgtgcac 612
>gb|CF276539.1|CF276539 14ETL--01-L15.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-L15, mRNA sequence
Length = 511
Score = 101 bits (51), Expect = 6e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 426 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 485
Query: 386 aacttcaactacgggcccgcggg 408
||||||||||||||||| |||||
Sbjct: 486 aacttcaactacgggccggcggg 508
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 305 cgacgactccaagcgcgagatcgctgccttcttcg 339
>gb|AU090552.1|AU090552 AU090552 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2747, mRNA sequence
Length = 710
Score = 97.6 bits (49), Expect = 9e-018
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||| ||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 55 cagtgnccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 114
Query: 386 aacttcaactacgggcccgcggggcagagcatcggcttcg 425
||||||||||||||||| ||||| ||| |||||| ||||
Sbjct: 115 aacttcaactacgggccggcgggaaagaacatcgggttcg 154
Score = 85.7 bits (43), Expect = 4e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| || |||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 255 caggggtttggcgccaccatccgggccatcaacggtgcgctcgagtgcaacgggaagaac 314
Query: 590 ccc 592
|||
Sbjct: 315 ccc 317
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 213 gcgctctggttctggatgaacaacgtgcac 242
>gb|CF281458.1|CF281458 14ETL--08-I08.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--08-I08, mRNA sequence
Length = 552
Score = 97.6 bits (49), Expect = 9e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctgg 385
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| |||
Sbjct: 472 cagtggccgtgccagccgggcaagaagtactacggacgcgggccgctgcagatctcatgg 531
Query: 386 aacttcaactacgggcc 402
|||||||||||||||||
Sbjct: 532 aacttcaactacgggcc 548
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 351 cgacgactccaagcgcgagatcgctgccttcttcg 385
>gb|AU082112.1|AU082112 AU082112 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1745, mRNA sequence
Length = 474
Score = 89.7 bits (45), Expect = 2e-015
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 530 cagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaagaac 589
||||| ||||||||||||| ||||||||||||| | |||||||||||| |||||||||||
Sbjct: 140 caggggttcggcgccaccanccgggccatcaacngtgcgctcgagtgcaacggcaagaac 199
Query: 590 ccc 592
|||
Sbjct: 200 ccc 202
Score = 52.0 bits (26), Expect = 5e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtgcac 511
|||||||||| |||||||||||||||||||
Sbjct: 98 gcgctctggttctggatgaacaacgtgcac 127
Score = 48.1 bits (24), Expect = 0.008
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 404 gcggggcagagcatcggcttcgacgggctgggcgaccccgacgcggtggcgc 455
|||||||||| |||||| |||||||||||| | ||||| ||| ||||||||
Sbjct: 20 gcggggcagaacatcgggttcgacgggctgagggacccggacagggtggcgc 71
>gb|CF282330.1|CF282330 14ETL--09-M19.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--09-M19, mRNA sequence
Length = 555
Score = 89.7 bits (45), Expect = 2e-015
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 326 cagtggccgtgccaggcggggaaggggtactacggc-cgcggcccgctgcagatctcctg 384
||||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||| ||
Sbjct: 469 cagtggccgtgccagccgggcaagaagtactacggnacgcgggccgctgcagatctcatg 528
Query: 385 gaacttcaactacgggcccgcggg 408
|||||||||||||||||| |||||
Sbjct: 529 gaacttcaactacgggccggcggg 552
Score = 61.9 bits (31), Expect = 5e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcg 239
|||||||||||||||||||||||| ||||||||||
Sbjct: 348 cgacgactccaagcgcgagatcgctgccttcttcg 382
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,856,825
Number of Sequences: 438736
Number of extensions: 1856825
Number of successful extensions: 17055
Number of sequences better than 0.5: 153
Number of HSP's better than 0.5 without gapping: 152
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15716
Number of HSP's gapped (non-prelim): 1302
length of query: 833
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 812
effective length of database: 2,791,206,460
effective search space: 2266459645520
effective search space used: 2266459645520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)