BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB639455.1|CB639455 OSJNEa10L04.f OSJNEa Oryza sativa (j... 285 8e-075
gb|CB670710.1|CB670710 OSJNEe03O24.f OSJNEe Oryza sativa (j... 285 8e-075
gb|CF304455.1|CF304455 ABF1--05-A09.g1 ABF3-overexpressing ... 285 8e-075
dbj|AK070408.1| Oryza sativa (japonica cultivar-group) cDNA... 285 8e-075
dbj|AK104929.1| Oryza sativa (japonica cultivar-group) cDNA... 285 8e-075
ref|XM_469632.1| Oryza sativa (japonica cultivar-group), mRNA 285 8e-075
gb|CA997884.1|CA997884 S234C1_A12 Rice cold stress germinat... 254 3e-065
gb|AU181006.1|AU181006 AU181006 Rice cDNA from leaf Oryza s... 196 6e-048
gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 ... 190 4e-046
gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC O... 190 4e-046
gb|AACV01007878.1| Oryza sativa (japonica cultivar-group) c... 190 4e-046
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 190 4e-046
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 190 4e-046
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 190 4e-046
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 190 4e-046
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 190 4e-046
gb|CB644827.1|CB644827 OSJNEb06D08.f OSJNEb Oryza sativa (j... 117 4e-024
gb|CB648855.1|CB648855 OSJNEb12H11.f OSJNEb Oryza sativa (j... 111 3e-022
gb|CB670082.1|CB670082 OSJNEe02P22.f OSJNEe Oryza sativa (j... 111 3e-022
gb|C71701.1|C71701 C71701 Rice panicle at flowering stage O... 66 1e-008
gb|AQ794524.1|AQ794524 nbxb0053M11r CUGI Rice BAC Library O... 46 0.013
dbj|AG214847.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.013
dbj|AG214966.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.013
dbj|AG207310.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.013
dbj|AB155391.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.013
dbj|AB155466.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.013
dbj|AB155599.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.013
dbj|AB155642.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.013
gb|AU065486.1|AU065486 AU065486 Rice callus Oryza sativa (j... 46 0.013
dbj|AK102748.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.013
gb|AC137547.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.013
gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) c... 46 0.013
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 46 0.013
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.013
dbj|AG214509.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.052
dbj|AB155557.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.052
dbj|AB156901.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.052
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.052
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 44 0.052
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 44 0.052
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213253.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG215047.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG024977.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG025117.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG206043.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB155537.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG024890.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AG025126.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.21
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 42 0.21
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 42 0.21
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 42 0.21
>gb|CB639455.1|CB639455 OSJNEa10L04.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa10L04 5', mRNA sequence
Length = 560
Score = 285 bits (144), Expect = 8e-075
Identities = 267/308 (86%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 552 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 493
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 492 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 433
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 432 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 373
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||| ||||| |||| || || || || || ||||||||||||
Sbjct: 372 gtgtcacctacacccacctgtgcgacgatccgatcgatagtatcggctgatgaattgaag 313
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
|| ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 312 gtcttgaggaggtaatctgtgccccacttgatcagctccttgacatggtcgagctcaccg 253
Query: 343 atggcctc 350
|| |||||
Sbjct: 252 atcgcctc 245
>gb|CB670710.1|CB670710 OSJNEe03O24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03O24 5', mRNA sequence
Length = 798
Score = 285 bits (144), Expect = 8e-075
Identities = 267/308 (86%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 521 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 462
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 461 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 402
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 401 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 342
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||| ||||| |||| || || || || || ||||||||||||
Sbjct: 341 gtgtcacctacacccacctgtgcgacgatccgatcgatagtatcggctgatgaattgaag 282
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
|| ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 281 gtcttgaggaggtaatctgtgccccacttgatcagctccttgacatggtcgagctcaccg 222
Query: 343 atggcctc 350
|| |||||
Sbjct: 221 atcgcctc 214
>gb|CF304455.1|CF304455 ABF1--05-A09.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--05-A09, mRNA sequence
Length = 637
Score = 285 bits (144), Expect = 8e-075
Identities = 267/308 (86%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 329
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 328 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 269
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 268 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 209
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||| ||||| |||| || || || || || ||||||||||||
Sbjct: 208 gtgtcacctacacccacctgtgcgacgatccgatcgatagtatcggctgatgaattgaag 149
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
|| ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 148 gtcttgaggaggtaatctgtgccccacttgatcagctccttgacatggtcgagctcaccg 89
Query: 343 atggcctc 350
|| |||||
Sbjct: 88 atcgcctc 81
>dbj|AK070408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054M04, full
insert sequence
Length = 2397
Score = 285 bits (144), Expect = 8e-075
Identities = 267/308 (86%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1089 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 1030
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 1029 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 970
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 969 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 910
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||| ||||| |||| || || || || || ||||||||||||
Sbjct: 909 gtgtcacctacacccacctgtgcgacgatccgatcgatagtatcggctgatgaattgaag 850
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
|| ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 849 gtcttgaggaggtaatctgtgccccacttgatcagctccttgacatggtcgagctcaccg 790
Query: 343 atggcctc 350
|| |||||
Sbjct: 789 atcgcctc 782
>dbj|AK104929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D09, full
insert sequence
Length = 1963
Score = 285 bits (144), Expect = 8e-075
Identities = 267/308 (86%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 664 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 605
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 604 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 545
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 544 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 485
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||| ||||| |||| || || || || || ||||||||||||
Sbjct: 484 gtgtcacctacacccacctgtgcgacgatccgatcgatagtatcggctgatgaattgaag 425
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
|| ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 424 gtcttgaggaggtaatctgtgccccacttgatcagctccttgacatggtcgagctcaccg 365
Query: 343 atggcctc 350
|| |||||
Sbjct: 364 atcgcctc 357
>ref|XM_469632.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2313
Score = 285 bits (144), Expect = 8e-075
Identities = 267/308 (86%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 988 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 929
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 928 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 869
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 868 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 809
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||| ||||| |||| || || || || || ||||||||||||
Sbjct: 808 gtgtcacctacacccacctgtgcgacgatccgatcgatagtatcggctgatgaattgaag 749
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
|| ||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 748 gtcttgaggaggtaatctgtgccccacttgatcagctccttgacatggtcgagctcaccg 689
Query: 343 atggcctc 350
|| |||||
Sbjct: 688 atcgcctc 681
>gb|CA997884.1|CA997884 S234C1_A12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 533
Score = 254 bits (128), Expect = 3e-065
Identities = 264/308 (85%), Gaps = 1/308 (0%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 434 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 375
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 374 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 315
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 314 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 255
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||| ||||| |||| || || || || || ||||||||||||
Sbjct: 254 gtgtcacctacacccacctgtgcgacgatccgatcgatagtatcggctgatgaattgaag 195
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
|| ||||||| ||| ||||| |||||||||||||||| | | | ||||||||||||||||
Sbjct: 194 gtcttgaggaggtaatctgtgccccacttgatcagctac-taacatggtcgagctcaccg 136
Query: 343 atggcctc 350
|| |||||
Sbjct: 135 atcgcctc 128
>gb|AU181006.1|AU181006 AU181006 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10291, mRNA sequence
Length = 300
Score = 196 bits (99), Expect = 6e-048
Identities = 183/211 (86%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 219 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 160
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 159 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 100
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 99 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 40
Query: 223 gtgtcacctacacccacctgagcgacaatcc 253
|||||||||||||||||||| ||||| ||||
Sbjct: 39 gtgtcacctacacccacctgtgcgacgatcc 9
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
sequence
Length = 139946
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 57050 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 57109
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 57110 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 57169
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 57170 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 57229
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 57230 gtgtcacctacacccacctg 57249
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 57422 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 57481
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 57482 tcgagctcaccgatcgcctc 57501
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
sequence
Length = 159661
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 119497 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 119438
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 119437 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 119378
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 119377 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 119318
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 119317 gtgtcacctacacccacctg 119298
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 119125 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 119066
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 119065 tcgagctcaccgatcgcctc 119046
>gb|AACV01007878.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007878, whole
genome shotgun sequence
Length = 25339
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 6148 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 6207
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 6208 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 6267
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 6268 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 6327
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 6328 gtgtcacctacacccacctg 6347
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 6520 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 6579
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 6580 tcgagctcaccgatcgcctc 6599
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 3197612 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 3197671
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 3197672 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 3197731
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 3197732 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 3197791
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 3197792 gtgtcacctacacccacctg 3197811
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 3197984 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 3198043
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 3198044 tcgagctcaccgatcgcctc 3198063
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 3585113 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 3585172
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 3585173 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 3585232
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 3585233 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 3585292
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 3585293 gtgtcacctacacccacctg 3585312
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 3585485 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 3585544
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 3585545 tcgagctcaccgatcgcctc 3585564
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 30851276 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 30851335
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 30851336 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 30851395
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 30851396 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 30851455
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 30851456 gtgtcacctacacccacctg 30851475
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 30851648 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 30851707
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 30851708 tcgagctcaccgatcgcctc 30851727
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 12368298 gtagtcaatgtcctctggtctcatcca 12368324
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 29982531 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 29982590
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 29982591 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 29982650
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 29982651 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 29982710
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 29982711 gtgtcacctacacccacctg 29982730
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 29982903 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 29982962
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 29982963 tcgagctcaccgatcgcctc 29982982
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 12076708 gtagtcaatgtcctctggtctcatcca 12076734
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 190 bits (96), Expect = 4e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 29891109 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 29891168
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
||||||||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 29891169 gcagccatttcggaagcaagatctgagcaagagtggcactcagtgacaggtctggggtaa 29891228
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||| |||||||| |||||||||||||| ||||||||||| || | ||||| |||
Sbjct: 29891229 tcgatatcctctggcctcatccagcagtagtggtcattaggttgggcaccaccttttgag 29891288
Query: 223 gtgtcacctacacccacctg 242
||||||||||||||||||||
Sbjct: 29891289 gtgtcacctacacccacctg 29891308
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 29891481 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 29891540
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 29891541 tcgagctcaccgatcgcctc 29891560
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 12079945 gtagtcaatgtcctctggtctcatcca 12079971
>gb|CB644827.1|CB644827 OSJNEb06D08.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06D08 5', mRNA sequence
Length = 866
Score = 117 bits (59), Expect = 4e-024
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 43 acgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagggca 102
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 87 acgagcttgtcagagtaagtcttgctgtccttgaacactatggaagctgcagcaagggca 28
Query: 103 gcagccatttcagacgctagatctgag 129
||||||||||| || || |||||||||
Sbjct: 27 gcagccatttcggaagcaagatctgag 1
>gb|CB648855.1|CB648855 OSJNEb12H11.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12H11 5', mRNA sequence
Length = 789
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 768 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 709
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 708 tcgagctcaccgatcgcctc 689
>gb|CB670082.1|CB670082 OSJNEe02P22.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02P22 5', mRNA sequence
Length = 799
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 271 gatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatgg 330
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct: 775 gatgaattgaaggtcttgaggaggtaatctgtgccccacttgatcagctccttgacatgg 716
Query: 331 tcgagctcaccgatggcctc 350
|||||||||||||| |||||
Sbjct: 715 tcgagctcaccgatcgcctc 696
>gb|C71701.1|C71701 C71701 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0084_1A, mRNA sequence
Length = 396
Score = 65.9 bits (33), Expect = 1e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 310 ttgatcagctccttgatatggtcgagctcaccgatggcctc 350
|||||||||||||||| |||||||||||||||||| |||||
Sbjct: 314 ttgatcagctccttgacatggtcgagctcaccgatcgcctc 274
>gb|AQ794524.1|AQ794524 nbxb0053M11r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0053M11r, DNA sequence
Length = 710
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 297 gtagtcaatgtcctctggtctcatcca 323
>dbj|AG214847.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16792T, 3'
flanking sequence of Tos17 insertion in rice strain
NE7044, genomic survey sequence
Length = 341
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcaggac 24
|||||||||||||||||||||||
Sbjct: 329 tcgagcggccgcccgggcaggac 307
>dbj|AG214966.1| Oryza sativa (japonica cultivar-group) DNA, clone:T17508T, 3'
flanking sequence of Tos17 insertion in rice strain
NE9006, genomic survey sequence
Length = 387
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcaggac 24
|||||||||||||||||||||||
Sbjct: 373 tcgagcggccgcccgggcaggac 351
>dbj|AG207310.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11469T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7066, genomic survey sequence
Length = 373
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcaggac 24
|||||||||||||||||||||||
Sbjct: 363 tcgagcggccgcccgggcaggac 341
>dbj|AB155391.1| Oryza sativa (japonica cultivar-group) DNA, clone:T18125T, 3'
flanking sequence of Tos17 insertion in rice strain
NF0025, genomic survey sequence
Length = 487
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcaggac 24
|||||||||||||||||||||||
Sbjct: 476 tcgagcggccgcccgggcaggac 454
>dbj|AB155466.1| Oryza sativa (japonica cultivar-group) DNA, clone:T18371T, 3'
flanking sequence of Tos17 insertion in rice strain
NF0572, genomic survey sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcaggac 24
|||||||||||||||||||||||
Sbjct: 604 tcgagcggccgcccgggcaggac 582
>dbj|AB155599.1| Oryza sativa (japonica cultivar-group) DNA, clone:T19045T, 3'
flanking sequence of Tos17 insertion in rice strain
NF1031, genomic survey sequence
Length = 301
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcaggac 24
|||||||||||||||||||||||
Sbjct: 293 tcgagcggccgcccgggcaggac 271
>dbj|AB155642.1| Oryza sativa (japonica cultivar-group) DNA, clone:T19532T, 3'
flanking sequence of Tos17 insertion in rice strain
NF2032, genomic survey sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcaggac 24
|||||||||||||||||||||||
Sbjct: 389 tcgagcggccgcccgggcaggac 367
>gb|AU065486.1|AU065486 AU065486 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C20059_1A, mRNA sequence
Length = 344
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 131 gtagtcaatgtcctctggtctcatcca 105
>dbj|AK102748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106K04, full
insert sequence
Length = 2189
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 879 gtagtcaatgtcctctggtctcatcca 853
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
complete sequence
Length = 144969
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 100525 gtagtcaatgtcctctggtctcatcca 100551
>gb|AACV01006539.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006539, whole
genome shotgun sequence
Length = 40585
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 8727 gtagtcaatgtcctctggtctcatcca 8753
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 3422205 gtagtcaatgtcctctggtctcatcca 3422231
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 46.1 bits (23), Expect = 0.013
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 159 gtagtcgatgtcctctggtctcatcca 185
|||||| ||||||||||||||||||||
Sbjct: 12175936 gtagtcaatgtcctctggtctcatcca 12175962
>dbj|AG214509.1| Oryza sativa (japonica cultivar-group) DNA, clone:T14853T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2779, genomic survey sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.052
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 cgagcggccgcccgggcaggac 24
||||||||||||||||||||||
Sbjct: 633 cgagcggccgcccgggcaggac 612
>dbj|AB155557.1| Oryza sativa (japonica cultivar-group) DNA, clone:T18745T, 3'
flanking sequence of Tos17 insertion in rice strain
NF1002, genomic survey sequence
Length = 499
Score = 44.1 bits (22), Expect = 0.052
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 cgagcggccgcccgggcaggac 24
||||||||||||||||||||||
Sbjct: 488 cgagcggccgcccgggcaggac 467
>dbj|AB156901.1| Oryza sativa (japonica cultivar-group) DNA, clone:T26440T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9871, genomic survey sequence
Length = 243
Score = 44.1 bits (22), Expect = 0.052
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagga 23
||||||||||||||||||||||
Sbjct: 242 tcgagcggccgcccgggcagga 221
>dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27966T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0587, genomic survey sequence
Length = 359
Score = 44.1 bits (22), Expect = 0.052
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 349 ttcgagcggccgcccgggcagg 328
>gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI34, mRNA
sequence
Length = 294
Score = 44.1 bits (22), Expect = 0.052
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 267 ttcgagcggccgcccgggcagg 246
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf
Oryza sativa (japonica cultivar-group) cDNA clone
JBI35, mRNA sequence
Length = 350
Score = 44.1 bits (22), Expect = 0.052
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 1 ttcgagcggccgcccgggcagg 22
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 313 tcgagcggccgcccgggcagg 293
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 138 tcgagcggccgcccgggcagg 118
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 383 tcgagcggccgcccgggcagg 363
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 302 tcgagcggccgcccgggcagg 282
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 361 tcgagcggccgcccgggcagg 341
>dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02943T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0384, genomic survey sequence
Length = 280
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 266 tcgagcggccgcccgggcagg 246
>dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04187T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0588, genomic survey sequence
Length = 285
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 265 tcgagcggccgcccgggcagg 245
>dbj|AG213253.1| Oryza sativa (japonica cultivar-group) DNA, clone:T05158T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2537, genomic survey sequence
Length = 272
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 235 tcgagcggccgcccgggcagg 215
>dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06795T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2764, genomic survey sequence
Length = 183
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 163 tcgagcggccgcccgggcagg 143
>dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07737T, 3'
flanking sequence of Tos17 insertion in rice strain
ND1024, genomic survey sequence
Length = 261
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 187 tcgagcggccgcccgggcagg 167
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 396,946
Number of Sequences: 438736
Number of extensions: 396946
Number of successful extensions: 9628
Number of sequences better than 0.5: 121
Number of HSP's better than 0.5 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9326
Number of HSP's gapped (non-prelim): 301
length of query: 373
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 353
effective length of database: 2,791,645,196
effective search space: 985450754188
effective search space used: 985450754188
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)