BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923331.2.1
(496 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (j... 127 6e-027
gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (j... 127 6e-027
gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (j... 127 6e-027
ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA 127 6e-027
emb|AJ582955.1| Oryza sativa (japonica cultivar-group) part... 121 4e-025
dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA... 119 1e-024
dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chro... 105 2e-020
gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) c... 105 2e-020
dbj|AP004457.2| Oryza sativa (japonica cultivar-group) geno... 105 2e-020
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 105 2e-020
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 105 2e-020
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 105 2e-020
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 105 2e-020
gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (j... 90 1e-015
gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing... 90 1e-015
gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library O... 78 5e-012
gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library O... 78 5e-012
gb|AQ840196.1|AQ840196 nbxb0052M01f CUGI Rice BAC Library O... 44 0.070
>gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04H13 3', mRNA sequence
Length = 861
Score = 127 bits (64), Expect = 6e-027
Identities = 241/300 (80%)
Strand = Plus / Plus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 527 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 586
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||||| ||| || || |||| |||
Sbjct: 587 atctgcgtcatctctaaatctgaactggtataatgcctgacattgtgtaaggccgattgg 646
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 647 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 706
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 707 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 766
Query: 432 cagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctct 491
|| |||||| ||| | || |||| |||||||||||| ||| ||||||||||| |||||
Sbjct: 767 catagttaattggtccgacctcagaaaaatgctctctgtcttgaaccgccctctttctct 826
>gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11L04 3', mRNA sequence
Length = 865
Score = 127 bits (64), Expect = 6e-027
Identities = 241/300 (80%)
Strand = Plus / Plus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 77 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 136
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 137 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 196
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 197 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 256
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 257 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 316
Query: 432 cagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctct 491
|| |||||| ||| | || |||| |||||||||||| ||| ||||||||||| |||||
Sbjct: 317 catagttaattggtccgacctcagaaaaatgctctctgtcttgaaccgccctctttctct 376
>gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 5', mRNA sequence
Length = 863
Score = 127 bits (64), Expect = 6e-027
Identities = 241/300 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 841 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 782
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 781 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 722
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 721 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 662
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 661 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 602
Query: 432 cagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctct 491
|| |||||| ||| | || |||| |||||||||||| ||| ||||||||||| |||||
Sbjct: 601 catagttaattggtccgacctcagaaaaatgctctctgtcttgaaccgccctctttctct 542
>ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2097
Score = 127 bits (64), Expect = 6e-027
Identities = 241/300 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 1640 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 1581
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 1580 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 1521
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 1520 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 1461
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 1460 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 1401
Query: 432 cagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctct 491
|| |||||| ||| | || |||| |||||||||||| ||| ||||||||||| |||||
Sbjct: 1400 catagttaattggtccgacctcagaaaaatgctctctgtcttgaaccgccctctttctct 1341
>emb|AJ582955.1| Oryza sativa (japonica cultivar-group) partial mRNA for glycoprotein
3-alpha-L-fucosyltransferase (FUT11 gene)
Length = 1419
Score = 121 bits (61), Expect = 4e-025
Identities = 235/293 (80%)
Strand = Plus / Minus
Query: 199 acaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgagttcagaa 258
|||||||| ||||||||||||||||| ||||| ||||| || |||| || || || |
Sbjct: 1415 acaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaagatctgcg 1356
Query: 259 tcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgggtaaatt 318
||||| |||||||| || ||| || ||||| ||||| || || |||| ||| ||||||
Sbjct: 1355 tcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattggataaatt 1296
Query: 319 ctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatccttccataca 378
|||||| |||| || |||||||||||||| || || || |||||||||||||| |||
Sbjct: 1295 ttgtataccttcaactcgtccccacctctaatacttggtggtctttcatccttccacaca 1236
Query: 379 ggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcccagagtt 438
||||| || ||||| || ||||||||| | ||||| || || ||||| || |||| ||||
Sbjct: 1235 ggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacccatagtt 1176
Query: 439 aactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctct 491
|| ||| | || |||| |||||||||||| ||| ||||||||||| |||||
Sbjct: 1175 aattggtccgacctcagaaaaatgctctctgtcttgaaccgccctctttctct 1123
>dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071F22, full
insert sequence
Length = 2097
Score = 119 bits (60), Expect = 1e-024
Identities = 240/300 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 1639 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 1580
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | || || |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 1579 atctgcgtcttctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 1520
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 1519 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 1460
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 1459 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 1400
Query: 432 cagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctct 491
|| |||||| ||| | || |||| |||||||||||| ||| ||||||||||| |||||
Sbjct: 1399 catagttaattggtccgacctcagaaaaatgctctctgtcttgaaccgccctctttctct 1340
>dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1320_D12,
*** SEQUENCING IN PROGRESS ***
Length = 89134
Score = 105 bits (53), Expect = 2e-020
Identities = 200/249 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 22957 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 22898
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 22897 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 22838
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 22837 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 22778
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 22777 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 22718
Query: 432 cagagttaa 440
|| ||||||
Sbjct: 22717 catagttaa 22709
Score = 44.1 bits (22), Expect = 0.070
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 458 aaatgctctctgacttaaaccgccctctctctct 491
|||||||||||| ||| ||||||||||| |||||
Sbjct: 21255 aaatgctctctgtcttgaaccgccctctttctct 21222
>gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018706, whole
genome shotgun sequence
Length = 24223
Score = 105 bits (53), Expect = 2e-020
Identities = 200/249 (80%)
Strand = Plus / Plus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 11085 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 11144
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 11145 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 11204
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 11205 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 11264
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 11265 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 11324
Query: 432 cagagttaa 440
|| ||||||
Sbjct: 11325 catagttaa 11333
Score = 44.1 bits (22), Expect = 0.070
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 458 aaatgctctctgacttaaaccgccctctctctct 491
|||||||||||| ||| ||||||||||| |||||
Sbjct: 12787 aaatgctctctgtcttgaaccgccctctttctct 12820
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0013B04
Length = 141319
Score = 105 bits (53), Expect = 2e-020
Identities = 200/249 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 73133 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 73074
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 73073 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 73014
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 73013 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 72954
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 72953 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 72894
Query: 432 cagagttaa 440
|| ||||||
Sbjct: 72893 catagttaa 72885
Score = 44.1 bits (22), Expect = 0.070
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 458 aaatgctctctgacttaaaccgccctctctctct 491
|||||||||||| ||| ||||||||||| |||||
Sbjct: 71431 aaatgctctctgtcttgaaccgccctctttctct 71398
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 105 bits (53), Expect = 2e-020
Identities = 200/249 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 23035695 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 23035636
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 23035635 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 23035576
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 23035575 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 23035516
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 23035515 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 23035456
Query: 432 cagagttaa 440
|| ||||||
Sbjct: 23035455 catagttaa 23035447
Score = 44.1 bits (22), Expect = 0.070
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 458 aaatgctctctgacttaaaccgccctctctctct 491
|||||||||||| ||| ||||||||||| |||||
Sbjct: 23033993 aaatgctctctgtcttgaaccgccctctttctct 23033960
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 105 bits (53), Expect = 2e-020
Identities = 200/249 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 14511660 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 14511601
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 14511600 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 14511541
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 14511540 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 14511481
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 14511480 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 14511421
Query: 432 cagagttaa 440
|| ||||||
Sbjct: 14511420 catagttaa 14511412
Score = 44.1 bits (22), Expect = 0.070
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 458 aaatgctctctgacttaaaccgccctctctctct 491
|||||||||||| ||| ||||||||||| |||||
Sbjct: 14509958 aaatgctctctgtcttgaaccgccctctttctct 14509925
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 105 bits (53), Expect = 2e-020
Identities = 200/249 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 22113666 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 22113607
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 22113606 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 22113547
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 22113546 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 22113487
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 22113486 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 22113427
Query: 432 cagagttaa 440
|| ||||||
Sbjct: 22113426 catagttaa 22113418
Score = 44.1 bits (22), Expect = 0.070
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 458 aaatgctctctgacttaaaccgccctctctctct 491
|||||||||||| ||| ||||||||||| |||||
Sbjct: 22111964 aaatgctctctgtcttgaaccgccctctttctct 22111931
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 105 bits (53), Expect = 2e-020
Identities = 200/249 (80%)
Strand = Plus / Minus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 23273782 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 23273723
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 23273722 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 23273663
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 23273662 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 23273603
Query: 372 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 431
||| |||||||| || ||||| || ||||||||| | ||||| || || ||||| || ||
Sbjct: 23273602 ccacacaggaacatgattgagcgatctaaatttagcaagcacagcagactccaaagcacc 23273543
Query: 432 cagagttaa 440
|| ||||||
Sbjct: 23273542 catagttaa 23273534
Score = 44.1 bits (22), Expect = 0.070
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 458 aaatgctctctgacttaaaccgccctctctctct 491
|||||||||||| ||| ||||||||||| |||||
Sbjct: 23272080 aaatgctctctgtcttgaaccgccctctttctct 23272047
>gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 3', mRNA sequence
Length = 771
Score = 89.7 bits (45), Expect = 1e-015
Identities = 162/201 (80%)
Strand = Plus / Plus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 567 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 626
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 627 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 686
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 687 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 746
Query: 372 ccatacaggaacgtggttgag 392
||| |||||||| || |||||
Sbjct: 747 ccacacaggaacatgattgag 767
>gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-N05, mRNA sequence
Length = 378
Score = 89.7 bits (45), Expect = 1e-015
Identities = 162/201 (80%)
Strand = Plus / Plus
Query: 192 tagttacacaaaaattacttcaagctttgcacagggatggtctttgatatattgctcgag 251
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||| || ||
Sbjct: 172 tagttatacaaaaatcacttcaagctttgcacatggatgatctttaatgtatttgtcaag 231
Query: 252 ttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgactgg 311
|| | ||||| |||||||| || ||| || ||||| ||||| || || |||| |||
Sbjct: 232 atctgcgtcatctctaaatctgaactggtataatgcctgtcgttgtgtaaggccgattgg 291
Query: 312 gtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcctt 371
|||||| |||||| |||| || |||||||||||||| || || || |||||||||||
Sbjct: 292 ataaattttgtataccttcaactcgtccccacctctaatacttggtggtctttcatcctt 351
Query: 372 ccatacaggaacgtggttgag 392
||| |||||||| || |||||
Sbjct: 352 ccacacaggaacatgattgag 372
>gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027A03f, DNA sequence
Length = 604
Score = 77.8 bits (39), Expect = 5e-012
Identities = 126/155 (81%)
Strand = Plus / Plus
Query: 286 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 345
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 67 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 126
Query: 346 ctaatgctcgggggcctttcatccttccatacaggaacgtggttgagggacctaaattta 405
||||| || || || |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 127 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 186
Query: 406 ccgagcactgcggattccaaggctcccagagttaa 440
| ||||| || || ||||| || |||| ||||||
Sbjct: 187 gcaagcacagcagactccaaagcacccatagttaa 221
>gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042F18f, DNA sequence
Length = 616
Score = 77.8 bits (39), Expect = 5e-012
Identities = 126/155 (81%)
Strand = Plus / Plus
Query: 286 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 345
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 67 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 126
Query: 346 ctaatgctcgggggcctttcatccttccatacaggaacgtggttgagggacctaaattta 405
||||| || || || |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 127 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 186
Query: 406 ccgagcactgcggattccaaggctcccagagttaa 440
| ||||| || || ||||| || |||| ||||||
Sbjct: 187 gcaagcacagcagactccaaagcacccatagttaa 221
>gb|AQ840196.1|AQ840196 nbxb0052M01f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0052M01f, DNA sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.070
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtactgaaaagaaggaatgatg 41
||||||||||||||||||||||
Sbjct: 560 gtactgaaaagaaggaatgatg 581
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,164,065
Number of Sequences: 438736
Number of extensions: 1164065
Number of successful extensions: 16118
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15940
Number of HSP's gapped (non-prelim): 164
length of query: 496
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 475
effective length of database: 2,791,206,460
effective search space: 1325823068500
effective search space used: 1325823068500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)