BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923171.2.1
(570 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU077796.1|AU077796 AU077796 Rice mature leaf Oryza sati... 84 9e-014
gb|AU162762.1|AU162762 AU162762 Rice mature leaf Oryza sati... 84 9e-014
gb|AU182515.1|AU182515 AU182515 Rice panicle at flowering s... 84 9e-014
gb|BF889451.1|BF889451 EST020 Magnaporthe grisea infected 1... 84 9e-014
gb|AU197766.1|AU197766 AU197766 Rice mature leaf Oryza sati... 84 9e-014
gb|CA753877.1|CA753877 BR040004000_PLATE_C12_91_097.ab1 OA ... 84 9e-014
gb|CB670832.1|CB670832 OSJNEe04B21.f OSJNEe Oryza sativa (j... 84 9e-014
gb|CF312487.1|CF312487 ABF--08-E09.g1 ABF3-overexpressing t... 84 9e-014
gb|CF325789.1|CF325789 JMT1--04-D11.g1 AtJMT-overexpressing... 84 9e-014
gb|CX728133.1|CX728133 OSJNEe04B21.r OSJNEe Oryza sativa (j... 84 9e-014
dbj|AP003535.2| Oryza sativa (japonica cultivar-group) geno... 84 9e-014
gb|AACV01000878.1| Oryza sativa (japonica cultivar-group) c... 84 9e-014
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 84 9e-014
ref|NM_183726.1| Oryza sativa (japonica cultivar-group), p... 84 9e-014
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 84 9e-014
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 84 9e-014
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 84 9e-014
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 84 9e-014
gb|AU078042.1|AU078042 AU078042 Rice cDNA from young root O... 78 6e-012
gb|AU057629.1|AU057629 AU057629 Oryza sativa mature leaf Ni... 70 1e-009
gb|D15982.1|D15982 RICC1824A Rice callus Oryza sativa (japo... 68 6e-009
gb|AU078041.1|AU078041 AU078041 Rice cDNA from young root O... 68 6e-009
gb|AU162568.1|AU162568 AU162568 Rice cDNA from young root O... 68 6e-009
gb|AU181080.1|AU181080 AU181080 Rice mature leaf Oryza sati... 68 6e-009
gb|AU077760.1|AU077760 AU077760 Rice cDNA from young root O... 66 2e-008
gb|AU070712.1|AU070712 AU070712 Rice cDNA from young root O... 62 3e-007
gb|AU077797.1|AU077797 AU077797 Rice mature leaf Oryza sati... 62 3e-007
gb|AU092837.1|AU092837 AU092837 Rice callus Oryza sativa (j... 62 3e-007
gb|AU077761.1|AU077761 AU077761 Rice cDNA from young root O... 56 2e-005
gb|AU162752.1|AU162752 AU162752 Rice mature leaf Oryza sati... 56 2e-005
gb|AU057474.1|AU057474 AU057474 Oryza sativa mature leaf Ni... 54 8e-005
gb|AU101234.1|AU101234 AU101234 Rice panicle at flowering s... 48 0.005
gb|AU162791.1|AU162791 AU162791 Rice mature leaf Oryza sati... 46 0.021
gb|CB668448.1|CB668448 OSJNEd16E24.f OSJNEd Oryza sativa (j... 44 0.081
ref|XM_474423.1| Oryza sativa (japonica cultivar-group), p... 44 0.081
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 44 0.081
emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromoso... 44 0.081
emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromoso... 44 0.081
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.081
gb|AU058007.1|AU058007 AU058007 Oryza sativa mature leaf Ni... 42 0.32
gb|AU063261.1|AU063261 AU063261 Rice callus Oryza sativa (j... 42 0.32
gb|AU162748.1|AU162748 AU162748 Rice mature leaf Oryza sati... 42 0.32
dbj|AK061994.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK064956.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK108464.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 ... 42 0.32
gb|AACV01000369.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01008214.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 42 0.32
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 42 0.32
dbj|AP003244.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
dbj|AP003200.4| Oryza sativa (japonica cultivar-group) geno... 42 0.32
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
>gb|AU077796.1|AU077796 AU077796 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21614_1A, mRNA sequence
Length = 452
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 224 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 283
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 284 ggacgcggcggagctgcgcgccaagctgct 313
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 150 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 194
>gb|AU162762.1|AU162762 AU162762 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21630, mRNA sequence
Length = 406
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 223 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 282
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 283 ggacgcggcggagctgcgcgccaagctgct 312
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 149 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 193
>gb|AU182515.1|AU182515 AU182515 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3403, mRNA sequence
Length = 441
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 57 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 116
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 117 ggacgcggcggagctgcgcgccaagctgct 146
>gb|BF889451.1|BF889451 EST020 Magnaporthe grisea infected 16-day-old rice seedling cDNA
library Oryza sativa (japonica cultivar-group) cDNA
clone BFR20 5', mRNA sequence
Length = 497
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 224 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 283
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 284 ggacgcggcggagctgcgcgccaagctgct 313
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 150 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 194
>gb|AU197766.1|AU197766 AU197766 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21309, mRNA sequence
Length = 469
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 216 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 275
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 276 ggacgcggcggagctgcgcgccaagctgct 305
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 142 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 186
>gb|CA753877.1|CA753877 BR040004000_PLATE_C12_91_097.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040004000_PLATE_C12_91_097.ab1 similar to (AF323612)
zinc-induced protein [Oryza sativa], mRNA sequence
Length = 626
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 223 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 282
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 283 ggacgcggcggagctgcgcgccaagctgct 312
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 149 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 193
>gb|CB670832.1|CB670832 OSJNEe04B21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04B21 5', mRNA sequence
Length = 575
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 214 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 273
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 274 ggacgcggcggagctgcgcgccaagctgct 303
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 140 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 184
>gb|CF312487.1|CF312487 ABF--08-E09.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-E09, mRNA sequence
Length = 408
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 55 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 114
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 115 ggacgcggcggagctgcgcgccaagctgct 144
>gb|CF325789.1|CF325789 JMT1--04-D11.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-D11, mRNA sequence
Length = 634
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 383 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 324
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 323 ggacgcggcggagctgcgcgccaagctgct 294
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 457 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 413
>gb|CX728133.1|CX728133 OSJNEe04B21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04B21 3', mRNA sequence
Length = 580
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 367 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 308
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 307 ggacgcggcggagctgcgcgccaagctgct 278
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 441 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 397
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1012D10
Length = 168267
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 59204 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 59145
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 59144 ggacgcggcggagctgcgcgccaagctgct 59115
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 59278 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 59234
>gb|AACV01000878.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000878,
whole genome shotgun sequence
Length = 5916
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 249 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 190
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 189 ggacgcggcggagctgcgcgccaagctgct 160
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 323 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 279
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 11844701 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 11844642
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 11844641 ggacgcggcggagctgcgcgccaagctgct 11844612
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 11844775 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 11844731
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 450 agcttctcctgctttaatattcgcgctcg 478
|||||||| ||||||| ||||||||||||
Sbjct: 5349431 agcttctcgtgctttagtattcgcgctcg 5349459
>ref|NM_183726.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 282
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 162 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 221
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 222 ggacgcggcggagctgcgcgccaagctgct 251
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 88 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 132
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 353926 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 353867
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 353866 ggacgcggcggagctgcgcgccaagctgct 353837
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 354000 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 353956
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002
genomic scaffold, whole genome shotgun sequence
Length = 5008528
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 274332 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 274273
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 274272 ggacgcggcggagctgcgcgccaagctgct 274243
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 274406 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 274362
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 11890827 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 11890768
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 11890767 ggacgcggcggagctgcgcgccaagctgct 11890738
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 11890901 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 11890857
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 450 agcttctcctgctttaatattcgcgctcg 478
|||||||| ||||||| ||||||||||||
Sbjct: 5354045 agcttctcgtgctttagtattcgcgctcg 5354073
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 83.8 bits (42), Expect = 9e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 11846919 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 11846860
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||||| ||||||||||||||
Sbjct: 11846859 ggacgcggcggagctgcgcgccaagctgct 11846830
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 11846993 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 11846949
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 450 agcttctcctgctttaatattcgcgctcg 478
|||||||| ||||||| ||||||||||||
Sbjct: 5351629 agcttctcgtgctttagtattcgcgctcg 5351657
>gb|AU078042.1|AU078042 AU078042 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10749_2Z, mRNA sequence
Length = 471
Score = 77.8 bits (39), Expect = 6e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 92 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 151
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||| | ||||||||||||||
Sbjct: 152 ggacgcggcggagntgcgcgccaagctgct 181
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 18 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 62
>gb|AU057629.1|AU057629 AU057629 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21630_2Z, mRNA sequence
Length = 615
Score = 69.9 bits (35), Expect = 1e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 232 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 291
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| | ||||||||||||||
Sbjct: 292 ggacgcggcggaantgcgcgccaagctgct 321
>gb|D15982.1|D15982 RICC1824A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1824A, mRNA sequence
Length = 342
Score = 67.9 bits (34), Expect = 6e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 122 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 181
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| || ||||||||||||||
Sbjct: 182 ggacgcggcgga-ctgcgcgccaagctgct 210
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 48 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 92
>gb|AU078041.1|AU078041 AU078041 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10749_1A, mRNA sequence
Length = 480
Score = 67.9 bits (34), Expect = 6e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 229 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 288
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| || ||||||||||||||
Sbjct: 289 ggacgcggcgga-ctgcgcgccaagctgct 317
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 155 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 199
>gb|AU162568.1|AU162568 AU162568 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10137, mRNA sequence
Length = 450
Score = 67.9 bits (34), Expect = 6e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 215 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 274
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| || ||||||||||||||
Sbjct: 275 ggacgcggcgga-ctgcgcgccaagctgct 303
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 141 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 185
>gb|AU181080.1|AU181080 AU181080 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21655, mRNA sequence
Length = 586
Score = 67.9 bits (34), Expect = 6e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 211 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 270
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| || ||||||||||||||
Sbjct: 271 ggacgcggcgga-ctgcgcgccaagctgct 299
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 137 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 181
>gb|AU077760.1|AU077760 AU077760 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10515_1A, mRNA sequence
Length = 651
Score = 65.9 bits (33), Expect = 2e-008
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
||||||||| |||||||| || ||||| ||| | || || || || |||| ||||||||
Sbjct: 234 ggcgtgggtnccggacccggtgaccgggtacnaccggccggccggcggcgcaaaggaggt 293
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||||| ||||||||||||||
Sbjct: 294 ggacgcggcggagcngcgcgccaagctgct 323
Score = 44.1 bits (22), Expect = 0.081
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 160 cggagggcggacgagaagaaggnggcggcggcggtggccaagcgc 204
>gb|AU070712.1|AU070712 AU070712 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10137_2Z, mRNA sequence
Length = 469
Score = 61.9 bits (31), Expect = 3e-007
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
||||||||| |||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 69 ggcgtgggtnccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 128
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
|||||||||||| | ||||||||||||||
Sbjct: 129 ggacgcggcggag-tgcgcgccaagctgct 157
>gb|AU077797.1|AU077797 AU077797 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21614_2Z, mRNA sequence
Length = 565
Score = 61.9 bits (31), Expect = 3e-007
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||||||||
Sbjct: 225 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggaggt 284
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| | ||||||||||||||
Sbjct: 285 ggacgcggcgga-ntgcgcgccaagctgct 313
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 151 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 195
>gb|AU092837.1|AU092837 AU092837 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53973, mRNA sequence
Length = 403
Score = 61.9 bits (31), Expect = 3e-007
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| | ||||| ||||| || || || || |||| ||||||||
Sbjct: 14 ggcgtgggtgccggacccgntgaccgggtactaccggccggccggcggcgcaaaggaggt 73
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| || ||||||||||||||
Sbjct: 74 ggacgcggcgga-ctgcgcgccaagctgct 102
>gb|AU077761.1|AU077761 AU077761 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10515_2Z, mRNA sequence
Length = 615
Score = 56.0 bits (28), Expect = 2e-005
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| |||| |||
Sbjct: 233 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaaggnggt 292
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| | ||||||||||||||
Sbjct: 293 ggacgcggcgga-ntgcgcgccaagctgct 321
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 159 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 203
>gb|AU162752.1|AU162752 AU162752 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21457, mRNA sequence
Length = 301
Score = 56.0 bits (28), Expect = 2e-005
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
||||||||| |||||||| || ||||| ||| | || || || || |||| ||||||||
Sbjct: 212 ggcgtgggtnccggacccggtgaccgggtacnaccggccggccggcggcgcaaaggaggt 271
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| || ||||||||||||||
Sbjct: 272 ggacgcggcgga-ctgcgcgccaagctgct 300
>gb|AU057474.1|AU057474 AU057474 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21472_1A, mRNA sequence
Length = 462
Score = 54.0 bits (27), Expect = 8e-005
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 279 gcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggtt 338
||||||||||||||||| || ||||| ||| | || || || || |||| ||||||||
Sbjct: 199 gcgtgggtgccggacccggtgaccgggtacnaccggccggccggcggcgcaaaggaggtg 258
Query: 339 gacgcggcggagctacgcgccaagctgct 367
||||||||||| | ||||||||||||||
Sbjct: 259 gacgcggcgga-cngcgcgccaagctgct 286
>gb|AU101234.1|AU101234 AU101234 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3403, mRNA sequence
Length = 364
Score = 48.1 bits (24), Expect = 0.005
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || |||| ||| ||||
Sbjct: 254 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggcgcaaagaaggt 313
Query: 338 tgacgcggcgga 349
|||||||||||
Sbjct: 314 ggacgcggcgga 325
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 180 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 224
>gb|AU162791.1|AU162791 AU162791 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21988, mRNA sequence
Length = 391
Score = 46.1 bits (23), Expect = 0.021
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || || || || ||||||||
Sbjct: 223 ggcgtgggtgccggacccggtgaccgggtactaccggccggccggcggca--aaggaggt 280
Query: 338 tgacgcggcggagctacgcgccaagctgct 367
||||||||||| || ||||||||||||||
Sbjct: 281 ggacgcggcgga-ctgcgcgccaagctgct 309
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 149 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 193
>gb|CB668448.1|CB668448 OSJNEd16E24.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16E24 5', mRNA sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 191 cgagaagaaggcggcggccgcg 212
||||||||||||||||||||||
Sbjct: 34 cgagaagaaggcggcggccgcg 55
>ref|XM_474423.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1650
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 191 cgagaagaaggcggcggccgcg 212
||||||||||||||||||||||
Sbjct: 931 cgagaagaaggcggcggccgcg 952
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 191 cgagaagaaggcggcggccgcg 212
||||||||||||||||||||||
Sbjct: 2462452 cgagaagaaggcggcggccgcg 2462431
>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12,
complete sequence
Length = 144670
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 191 cgagaagaaggcggcggccgcg 212
||||||||||||||||||||||
Sbjct: 3839 cgagaagaaggcggcggccgcg 3818
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
complete sequence
Length = 145391
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 191 cgagaagaaggcggcggccgcg 212
||||||||||||||||||||||
Sbjct: 126383 cgagaagaaggcggcggccgcg 126362
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 191 cgagaagaaggcggcggccgcg 212
||||||||||||||||||||||
Sbjct: 35067336 cgagaagaaggcggcggccgcg 35067315
>gb|AU058007.1|AU058007 AU058007 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21988_2Z, mRNA sequence
Length = 427
Score = 42.1 bits (21), Expect = 0.32
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctacta 310
|||||||||||||||||| || ||||| |||||
Sbjct: 51 ggcgtgggtgccggacccggtgaccgggtacta 83
>gb|AU063261.1|AU063261 AU063261 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53973_1A, mRNA sequence
Length = 270
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 141 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 185
>gb|AU162748.1|AU162748 AU162748 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21369, mRNA sequence
Length = 283
Score = 42.1 bits (21), Expect = 0.32
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 180 cggagggtcgacgagaagaaggcggcggccgcgctgaccaagcgc 224
||||||| ||||||||||||| |||||| ||| || ||||||||
Sbjct: 151 cggagggcggacgagaagaaggtggcggcggcggtggccaagcgc 195
>dbj|AK061994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C05, full
insert sequence
Length = 1936
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 458 ctgctttaatattcgcgctcg 478
|||||||||||||||||||||
Sbjct: 51 ctgctttaatattcgcgctcg 71
>dbj|AK064956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A06, full
insert sequence
Length = 5529
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 458 ctgctttaatattcgcgctcg 478
|||||||||||||||||||||
Sbjct: 54 ctgctttaatattcgcgctcg 74
>dbj|AK108464.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D11, full
insert sequence
Length = 1103
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 450 agcttctcctgctttaatattcgcgctcg 478
|||||||| ||||||| ||||||||||||
Sbjct: 979 agcttctcgtgctttagtattcgcgctcg 951
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
sequence
Length = 164236
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 458 ctgctttaatattcgcgctcg 478
|||||||||||||||||||||
Sbjct: 139079 ctgctttaatattcgcgctcg 139099
>gb|AACV01000369.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000369, whole
genome shotgun sequence
Length = 17331
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 450 agcttctcctgctttaatattcgcgctcg 478
|||||||| ||||||| ||||||||||||
Sbjct: 2957 agcttctcgtgctttagtattcgcgctcg 2985
>gb|AACV01008214.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008214, whole
genome shotgun sequence
Length = 8952
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 458 ctgctttaatattcgcgctcg 478
|||||||||||||||||||||
Sbjct: 1210 ctgctttaatattcgcgctcg 1190
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 458 ctgctttaatattcgcgctcg 478
|||||||||||||||||||||
Sbjct: 1338559 ctgctttaatattcgcgctcg 1338579
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 450 agcttctcctgctttaatattcgcgctcg 478
|||||||| ||||||| ||||||||||||
Sbjct: 5349271 agcttctcgtgctttagtattcgcgctcg 5349299
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 928,937
Number of Sequences: 438736
Number of extensions: 928937
Number of successful extensions: 24408
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23579
Number of HSP's gapped (non-prelim): 818
length of query: 570
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 549
effective length of database: 2,791,206,460
effective search space: 1532372346540
effective search space used: 1532372346540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)