BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696537.2.1
(592 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB644513.1|CB644513 OSJNEb05M06.r OSJNEb Oryza sativa (j... 244 5e-062
dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA... 244 5e-062
gb|CB645213.1|CB645213 OSJNEb06M07.r OSJNEb Oryza sativa (j... 180 6e-043
gb|CB657018.1|CB657018 OSJNEc12A09.r OSJNEc Oryza sativa (j... 180 6e-043
gb|CB663607.1|CB663607 OSJNEd08M13.r OSJNEd Oryza sativa (j... 180 6e-043
gb|CB665250.1|CB665250 OSJNEd11I02.r OSJNEd Oryza sativa (j... 180 6e-043
gb|CB668196.1|CB668196 OSJNEd15O22.f OSJNEd Oryza sativa (j... 180 6e-043
gb|CB685308.1|CB685308 OSJNEf15J19.f OSJNEf Oryza sativa (j... 180 6e-043
gb|CB685309.1|CB685309 OSJNEf15J19.r OSJNEf Oryza sativa (j... 180 6e-043
dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA... 180 6e-043
ref|NM_196821.1| Oryza sativa (japonica cultivar-group) put... 180 6e-043
dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA... 172 1e-040
gb|CB658226.1|CB658226 OSJNEc14B21.r OSJNEc Oryza sativa (j... 149 2e-033
ref|XM_470211.1| Oryza sativa (japonica cultivar-group), p... 149 2e-033
gb|CB645212.1|CB645212 OSJNEb06M07.f OSJNEb Oryza sativa (j... 127 7e-027
gb|AU100775.1|AU100775 AU100775 Rice callus Oryza sativa (j... 121 4e-025
gb|CB655914.1|CB655914 OSJNEc09L13.f OSJNEc Oryza sativa (j... 115 3e-023
gb|CB663606.1|CB663606 OSJNEd08M13.f OSJNEd Oryza sativa (j... 113 1e-022
gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, N... 111 4e-022
gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) c... 111 4e-022
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 111 4e-022
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 111 4e-022
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 111 4e-022
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 111 4e-022
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 111 4e-022
gb|AC025905.3| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|AACV01021714.1| Oryza sativa (japonica cultivar-group) c... 103 1e-019
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 103 1e-019
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|CB665249.1|CB665249 OSJNEd11I02.f OSJNEd Oryza sativa (j... 98 7e-018
gb|CB657017.1|CB657017 OSJNEc12A09.f OSJNEc Oryza sativa (j... 96 3e-017
gb|CB658708.1|CB658708 OSJNEc14P01.f OSJNEc Oryza sativa (j... 96 3e-017
gb|CF312843.1|CF312843 ABF--08-M04.g1 ABF3-overexpressing t... 96 3e-017
gb|CD670985.1|CD670985 OsMR406 5MT resistant rice mutant cD... 90 2e-015
dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|CB662393.1|CB662393 OSJNEd06F24.f OSJNEd Oryza sativa (j... 88 6e-015
gb|CB662394.1|CB662394 OSJNEd06F24.r OSJNEd Oryza sativa (j... 88 6e-015
gb|AC119796.2| Oryza sativa (japonica cultivar-group) chrom... 66 2e-008
gb|AU100776.1|AU100776 AU100776 Rice callus Oryza sativa (j... 62 4e-007
>gb|CB644513.1|CB644513 OSJNEb05M06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05M06 3', mRNA sequence
Length = 836
Score = 244 bits (123), Expect = 5e-062
Identities = 282/335 (84%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 198 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 257
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| || ||| |||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 258 acgttcgatgtcgtcccacagtcgttgcataggatccatatcattttcttctgatagatc 317
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
|||||||||| || |||||||||| ||||| ||||||||||| | ||||||||
Sbjct: 318 actggcatcggcgatgctgcaacctcttgatcaagcttttgccatgcatgggacatgtca 377
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
|| |||||||||||||| |||||||| || || || || || | |||||||||||| |||
Sbjct: 378 caagcagacctcaggcagaccgggcaagagaattgttgatgggatctcatctcgtatagg 437
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| |||||||||||||| || | ||||| |||| | ||||| |||
Sbjct: 438 cattccagatggatcgtgtgtccgcagtgcagtgcactgatgtcttttgttgagtcaaat 497
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|||||||| | ||| ||||||||||| || |||||
Sbjct: 498 agatactcgaagcatacagggcagttatggtgcat 532
>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full
insert sequence
Length = 2604
Score = 244 bits (123), Expect = 5e-062
Identities = 282/335 (84%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 2260 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 2201
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| || ||| |||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 2200 acgttcgatgtcgtcccacagtcgttgcataggatccatatcattttcttctgatagatc 2141
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
|||||||||| || |||||||||| ||||| ||||||||||| | ||||||||
Sbjct: 2140 actggcatcggcgatgctgcaacctcttgatcaagcttttgccatgcatgggacatgtca 2081
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
|| |||||||||||||| |||||||| || || || || || | |||||||||||| |||
Sbjct: 2080 caagcagacctcaggcagaccgggcaagagaattgttgatgggatctcatctcgtatagg 2021
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| |||||||||||||| || | ||||| |||| | ||||| |||
Sbjct: 2020 cattccagatggatcgtgtgtccgcagtgcagtgcactgatgtcttttgttgagtcaaat 1961
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|||||||| | ||| ||||||||||| || |||||
Sbjct: 1960 agatactcgaagcatacagggcagttatggtgcat 1926
>gb|CB645213.1|CB645213 OSJNEb06M07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06M07 3', mRNA sequence
Length = 825
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 377 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 436
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 437 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 496
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 497 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 556
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 557 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 616
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 617 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 676
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 677 aggtactcgaagcagacaggacagttgtgatgcat 711
>gb|CB657018.1|CB657018 OSJNEc12A09.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc12A09 3', mRNA sequence
Length = 845
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 432 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 491
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 492 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 551
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 552 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 611
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 612 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 671
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 672 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 731
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 732 aggtactcgaagcagacaggacagttgtgatgcat 766
>gb|CB663607.1|CB663607 OSJNEd08M13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08M13 3', mRNA sequence
Length = 803
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 355 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 414
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 415 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 474
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 475 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 534
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 535 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 594
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 595 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 654
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 655 aggtactcgaagcagacaggacagttgtgatgcat 689
>gb|CB665250.1|CB665250 OSJNEd11I02.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11I02 3', mRNA sequence
Length = 842
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 318 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 377
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 378 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 437
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 438 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 497
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 498 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 557
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 558 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 617
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 618 aggtactcgaagcagacaggacagttgtgatgcat 652
>gb|CB668196.1|CB668196 OSJNEd15O22.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O22 5', mRNA sequence
Length = 818
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 789 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 730
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 729 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 670
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 669 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 610
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 609 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 550
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 549 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 490
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 489 aggtactcgaagcagacaggacagttgtgatgcat 455
>gb|CB685308.1|CB685308 OSJNEf15J19.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15J19 5', mRNA sequence
Length = 742
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 672 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 613
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 612 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 553
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 552 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 493
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 492 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 433
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 432 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 373
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 372 aggtactcgaagcagacaggacagttgtgatgcat 338
>gb|CB685309.1|CB685309 OSJNEf15J19.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15J19 3', mRNA sequence
Length = 766
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 429 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 488
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 489 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 548
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| | ||| ||||||| |
Sbjct: 549 tccggcatcggcgtcgcggccacctcctcgtcaagcttcttccacacgtccgacatgtcg 608
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 609 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 668
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 669 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 728
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | |||||||| ||||||||||||||
Sbjct: 729 aggtactcaaaacagacaggacagttgtgatgcat 763
>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full
insert sequence
Length = 1283
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 909 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 850
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 849 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 790
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 789 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 730
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 729 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 670
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 669 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 610
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 609 aggtactcgaagcagacaggacagttgtgatgcat 575
>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein
(pollen germination related protein) (OSJNBa0018F16.5),
mRNA
Length = 1263
Score = 180 bits (91), Expect = 6e-043
Identities = 274/335 (81%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 895 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 836
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 835 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 776
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 775 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 716
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 715 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 656
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 655 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 596
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 595 aggtactcgaagcagacaggacagttgtgatgcat 561
>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full
insert sequence
Length = 1284
Score = 172 bits (87), Expect = 1e-040
Identities = 273/335 (81%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| |||||| || |||||| | |
Sbjct: 905 gtctcccgggtgttgtaggagctgcatccggggcacttccgcgccaggacgtggaagttc 846
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatc 376
||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| |||| |
Sbjct: 845 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 786
Query: 377 gctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgttg 436
| |||||||| | ||| || |||| || || ||||| | ||| ||| ||||||| |
Sbjct: 785 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 726
Query: 437 caggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaagg 496
||||| |||| |||||||||||| | || || || |||||||||||| ||| |||
Sbjct: 725 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 666
Query: 497 cattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaat 556
|||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| |||
Sbjct: 665 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 606
Query: 557 agatactccatgcagacagggcagttgtgatgcat 591
|| ||||| | ||||||||| ||||||||||||||
Sbjct: 605 aggtactcgaagcagacaggacagttgtgatgcat 571
>gb|CB658226.1|CB658226 OSJNEc14B21.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14B21 3', mRNA sequence
Length = 848
Score = 149 bits (75), Expect = 2e-033
Identities = 198/239 (82%)
Strand = Plus / Plus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctgctgatccagc 412
|||||||| ||||||||||||||| |||||||||| || |||||||||| ||||| |||
Sbjct: 383 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctcttgatcaagc 442
Query: 413 ttttgccagatgtcggacatgttgcaggcagacctcaggcacaccgggcatgaaaactgc 472
|||||||| | |||||||| || |||||||||||||| |||||||| || || ||
Sbjct: 443 ttttgccatgcatgggacatgtcacaagcagacctcaggcagaccgggcaagagaattgt 502
Query: 473 tggtgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacg 532
|| || | |||||||||||| ||||||||||| ||||| |||||||||||||| || |
Sbjct: 503 tgatgggatctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgca 562
Query: 533 ctgatagctttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||| |||| | ||||| ||||||||||| | ||| ||||||||||| || |||||
Sbjct: 563 ctgatgtcttttgttgagtcaaatagatactcgaagcatacagggcagttatggtgcat 621
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 198 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 257
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 258 acgttcgatgtcgtcccacagtcgttgcataggatccata 297
>ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1050
Score = 149 bits (75), Expect = 2e-033
Identities = 198/239 (82%)
Strand = Plus / Minus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctgctgatccagc 412
|||||||| ||||||||||||||| |||||||||| || |||||||||| ||||| |||
Sbjct: 860 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctcttgatcaagc 801
Query: 413 ttttgccagatgtcggacatgttgcaggcagacctcaggcacaccgggcatgaaaactgc 472
|||||||| | |||||||| || |||||||||||||| |||||||| || || ||
Sbjct: 800 ttttgccatgcatgggacatgtcacaagcagacctcaggcagaccgggcaagagaattgt 741
Query: 473 tggtgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacg 532
|| || | |||||||||||| ||||||||||| ||||| |||||||||||||| || |
Sbjct: 740 tgatgggatctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgca 681
Query: 533 ctgatagctttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||| |||| | ||||| ||||||||||| | ||| ||||||||||| || |||||
Sbjct: 680 ctgatgtcttttgttgagtcaaatagatactcgaagcatacagggcagttatggtgcat 622
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 996 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 937
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 936 acgttcgatgtcgtcccacagtcgttgcataggatccata 897
>gb|CB645212.1|CB645212 OSJNEb06M07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06M07 5', mRNA sequence
Length = 844
Score = 127 bits (64), Expect = 7e-027
Identities = 223/276 (80%)
Strand = Plus / Minus
Query: 316 cacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagat 375
|||||| |||||| |||| ||||||||||| |||||||||| |||||||||||| ||||
Sbjct: 826 cacgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaa 767
Query: 376 cgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcggacatgtt 435
| | |||||||| | ||| || |||| || || ||||| | ||| ||| |||||||
Sbjct: 766 ctccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtc 707
Query: 436 gcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaag 495
|||||| |||| |||||||||||| | || || || |||||||||||| ||| ||
Sbjct: 706 gcaggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcag 647
Query: 496 gcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaa 555
||||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||||| ||
Sbjct: 646 gcattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaa 587
Query: 556 tagatactccatgcagacagggcagttgtgatgcat 591
||| ||||| | ||||||||| ||||||||||||||
Sbjct: 586 taggtactcgaagcagacaggacagttgtgatgcat 551
>gb|AU100775.1|AU100775 AU100775 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30610, mRNA sequence
Length = 589
Score = 121 bits (61), Expect = 4e-025
Identities = 100/113 (88%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 166 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 107
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctg 369
||||| |||||| |||| ||||||||||| |||||||||| ||||||||||||
Sbjct: 106 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctg 54
>gb|CB655914.1|CB655914 OSJNEc09L13.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09L13 5', mRNA sequence
Length = 816
Score = 115 bits (58), Expect = 3e-023
Identities = 211/262 (80%)
Strand = Plus / Minus
Query: 330 cgccacagtcgttgcaaaggatccataccatcttcttctgatagatcgctggcatcgggg 389
|||| ||||||||||| |||||||||| |||||||||||| |||| | | |||||||| |
Sbjct: 812 cgccgcagtcgttgcagaggatccatatcatcttcttctggtagaactccggcatcggcg 753
Query: 390 acgctgcaacctgctgatccagcttttgccagatgtcggacatgttgcaggcagacctca 449
||| || |||| || || ||||| | ||| ||| ||||||| |||||| ||||
Sbjct: 752 tcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcgcaggccgaccgtg 693
Query: 450 ggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaaggcattccaggtgga 509
|||||||||||| | || || || |||||||||||| ||| ||||||||||| ||||
Sbjct: 692 agcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcaggcattccagatgga 633
Query: 510 tggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaatagatactccatgc 569
| ||||| |||||||| | |||||||| | ||| ||||||| ||||| ||||| | ||
Sbjct: 632 tcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaataggtactcgaagc 573
Query: 570 agacagggcagttgtgatgcat 591
||||||| ||||||||||||||
Sbjct: 572 agacaggacagttgtgatgcat 551
>gb|CB663606.1|CB663606 OSJNEd08M13.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08M13 5', mRNA sequence
Length = 824
Score = 113 bits (57), Expect = 1e-022
Identities = 207/257 (80%)
Strand = Plus / Minus
Query: 335 cagtcgttgcaaaggatccataccatcttcttctgatagatcgctggcatcggggacgct 394
||||||||||| |||||||||| |||||||||||| |||| | | |||||||| | |||
Sbjct: 823 cagtcgttgcagaggatccatatcatcttcttctggtagaactccggcatcggcgtcgcg 764
Query: 395 gcaacctgctgatccagcttttgccagatgtcggacatgttgcaggcagacctcaggcac 454
|| |||| || || ||||| | ||| ||| ||||||| |||||| |||| ||||
Sbjct: 763 gccacctcctcgtcgagcttcttccacgcgtccgacatgtcgcaggccgaccgtgagcac 704
Query: 455 accgggcatgaaaactgctggtgcgctctcatctcgtaaaggcattccaggtggatggtg 514
|||||||| | || || || |||||||||||| ||| ||||||||||| ||||| |||
Sbjct: 703 accgggcaagcgaagtgatgatgcgctctcatcacgttcaggcattccagatggatcgtg 644
Query: 515 tgtccgcagtggagcacgctgatagctttcatcgagtcgaatagatactccatgcagaca 574
|| |||||||| | |||||||| | ||| ||||||| ||||| ||||| | |||||||
Sbjct: 643 tgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaataggtactcgaagcagaca 584
Query: 575 gggcagttgtgatgcat 591
|| ||||||||||||||
Sbjct: 583 ggacagttgtgatgcat 567
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0067N01, from chromosome 3, complete sequence
Length = 159636
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 136185 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 136244
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 136245 acgttcgatgtcgtcccacagtcgttgcataggatccata 136284
Score = 67.9 bits (34), Expect = 6e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctg 402
|||||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 136370 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctg 136419
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 136688 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 136732
>gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005867, whole
genome shotgun sequence
Length = 94934
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 71838 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 71779
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 71778 acgttcgatgtcgtcccacagtcgttgcataggatccata 71739
Score = 67.9 bits (34), Expect = 6e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctg 402
|||||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 71653 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctg 71604
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 71335 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 71291
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 946484 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 946425
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 946424 acgttcgatgtcgtcccacagtcgttgcataggatccata 946385
Score = 67.9 bits (34), Expect = 6e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctg 402
|||||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 946299 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctg 946250
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 945981 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 945937
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 2545982 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 2545923
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 2545922 acgttcgatgtcgtcccacagtcgttgcataggatccata 2545883
Score = 67.9 bits (34), Expect = 6e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctg 402
|||||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 2545797 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctg 2545748
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 2545479 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 2545435
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 2738344 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 2738285
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 2738284 acgttcgatgtcgtcccacagtcgttgcataggatccata 2738245
Score = 67.9 bits (34), Expect = 6e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctg 402
|||||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 2738159 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctg 2738110
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 2737841 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 2737797
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 2534019 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 2533960
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 2533959 acgttcgatgtcgtcccacagtcgttgcataggatccata 2533920
Score = 67.9 bits (34), Expect = 6e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctg 402
|||||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 2533834 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctg 2533785
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 2533516 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 2533472
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 111 bits (56), Expect = 4e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 2533909 gtctgccgggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgc 2533850
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| || ||| |||||||||||||| ||||||||||
Sbjct: 2533849 acgttcgatgtcgtcccacagtcgttgcataggatccata 2533810
Score = 67.9 bits (34), Expect = 6e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 353 cataccatcttcttctgatagatcgctggcatcggggacgctgcaacctg 402
|||||||| ||||||||||||||| |||||||||| || |||||||||||
Sbjct: 2533724 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctg 2533675
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 2533406 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 2533362
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
complete sequence
Length = 179157
Score = 103 bits (52), Expect = 1e-019
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 70068 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 70127
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 70128 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 70167
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 70728 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 70787
Query: 536 atagctttcatcgagtcgaatagatact 563
|| | ||| ||||||| ||||| ||||
Sbjct: 70788 atgtccttcgtcgagtcaaataggtact 70815
>gb|AACV01021714.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021714, whole
genome shotgun sequence
Length = 40495
Score = 103 bits (52), Expect = 1e-019
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 29866 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 29925
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 29926 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 29965
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 30526 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 30585
Query: 536 atagctttcatcgagtcgaatagatact 563
|| | ||| ||||||| ||||| ||||
Sbjct: 30586 atgtccttcgtcgagtcaaataggtact 30613
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 103 bits (52), Expect = 1e-019
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 2922810 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 2922869
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 2922870 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 2922909
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 2923470 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 2923529
Query: 536 atagctttcatcgagtcgaatagatact 563
|| | ||| ||||||| ||||| ||||
Sbjct: 2923530 atgtccttcgtcgagtcaaataggtact 2923557
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 103 bits (52), Expect = 1e-019
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 4126788 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 4126847
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 4126848 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 4126887
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 4127448 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 4127507
Query: 536 atagctttcatcgagtcgaatagatact 563
|| | ||| ||||||| ||||| ||||
Sbjct: 4127508 atgtccttcgtcgagtcaaataggtact 4127535
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 103 bits (52), Expect = 1e-019
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 14992582 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 14992641
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 14992642 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 14992681
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 14993242 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 14993301
Query: 536 atagctttcatcgagtcgaatagatact 563
|| | ||| ||||||| ||||| ||||
Sbjct: 14993302 atgtccttcgtcgagtcaaataggtact 14993329
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 103 bits (52), Expect = 1e-019
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 16191179 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 16191238
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 16191239 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 16191278
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 16191839 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 16191898
Query: 536 atagctttcatcgagtcgaatagatact 563
|| | ||| ||||||| ||||| ||||
Sbjct: 16191899 atgtccttcgtcgagtcaaataggtact 16191926
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 103 bits (52), Expect = 1e-019
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgc 316
|||| |||||||||||| ||||||||||| |||||||| ||||||| || |||||| | |
Sbjct: 16199420 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 16199479
Query: 317 acgttggacgtcacgccacagtcgttgcaaaggatccata 356
||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 16199480 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 16199519
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 16200080 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 16200139
Query: 536 atagctttcatcgagtcgaatagatact 563
|| | ||| ||||||| ||||| ||||
Sbjct: 16200140 atgtccttcgtcgagtcaaataggtact 16200167
>gb|CB665249.1|CB665249 OSJNEd11I02.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11I02 5', mRNA sequence
Length = 815
Score = 97.6 bits (49), Expect = 7e-018
Identities = 196/245 (80%)
Strand = Plus / Minus
Query: 347 aggatccataccatcttcttctgatagatcgctggcatcggggacgctgcaacctgctga 406
|||||||||| |||||||||||| |||| | | |||||||| | ||| || |||| ||
Sbjct: 812 aggatccatatcatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcg 753
Query: 407 tccagcttttgccagatgtcggacatgttgcaggcagacctcaggcacaccgggcatgaa 466
|| ||||| | ||| ||| ||||||| |||||| |||| |||||||||||| |
Sbjct: 752 tcgagcttcttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggcaagcg 693
Query: 467 aactgctggtgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtgg 526
|| || || |||||||||||| ||| ||||||||||| ||||| ||||| ||||||||
Sbjct: 692 aagtgatgatgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgc 633
Query: 527 agcacgctgatagctttcatcgagtcgaatagatactccatgcagacagggcagttgtga 586
| |||||||| | ||| ||||||| ||||| ||||| | ||||||||| |||||||||
Sbjct: 632 aagacgctgatgtccttcgtcgagtcaaataggtactcgaagcagacaggacagttgtga 573
Query: 587 tgcat 591
|||||
Sbjct: 572 tgcat 568
>gb|CB657017.1|CB657017 OSJNEc12A09.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc12A09 5', mRNA sequence
Length = 822
Score = 95.6 bits (48), Expect = 3e-017
Identities = 195/244 (79%)
Strand = Plus / Minus
Query: 348 ggatccataccatcttcttctgatagatcgctggcatcggggacgctgcaacctgctgat 407
||||||||| |||||||||||| |||| | | |||||||| | ||| || |||| || |
Sbjct: 809 ggatccatatcatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgt 750
Query: 408 ccagcttttgccagatgtcggacatgttgcaggcagacctcaggcacaccgggcatgaaa 467
| ||||| | ||| ||| ||||||| |||||| |||| |||||||||||| | |
Sbjct: 749 cgagcttcttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggcaagcga 690
Query: 468 actgctggtgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtgga 527
| || || |||||||||||| ||| ||||||||||| ||||| ||||| |||||||| |
Sbjct: 689 agtgatgatgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgca 630
Query: 528 gcacgctgatagctttcatcgagtcgaatagatactccatgcagacagggcagttgtgat 587
|||||||| | ||| ||||||| ||||| ||||| | ||||||||| ||||||||||
Sbjct: 629 agacgctgatgtccttcgtcgagtcaaataggtactcgaagcagacaggacagttgtgat 570
Query: 588 gcat 591
||||
Sbjct: 569 gcat 566
>gb|CB658708.1|CB658708 OSJNEc14P01.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14P01 5', mRNA sequence
Length = 826
Score = 95.6 bits (48), Expect = 3e-017
Identities = 126/152 (82%)
Strand = Plus / Minus
Query: 440 gcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaaggcat 499
|||||||||||||| |||||||| || || || || || | |||||||||||| ||||||
Sbjct: 820 gcagacctcaggcagaccgggcaagagaattgttgatgggatctcatctcgtataggcat 761
Query: 500 tccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaataga 559
||||| ||||| |||||||||||||| || | ||||| |||| | ||||| ||||||
Sbjct: 760 tccagatggatcgtgtgtccgcagtgcagtgcactgatgtcttttgttgagtcaaataga 701
Query: 560 tactccatgcagacagggcagttgtgatgcat 591
||||| | ||| ||||||||||| || |||||
Sbjct: 700 tactcgaagcatacagggcagttatggtgcat 669
>gb|CF312843.1|CF312843 ABF--08-M04.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-M04, mRNA sequence
Length = 564
Score = 95.6 bits (48), Expect = 3e-017
Identities = 112/132 (84%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 257 gtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatg-tggaactg 315
|||| |||||||||||| ||||||||||| |||||||| ||||||| || | ||||| |
Sbjct: 394 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgttggaagtt 453
Query: 316 cacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagat 375
|||||| |||||| || ||||||||||| |||||||||| |||||||||||| ||||
Sbjct: 454 cacgttcgacgtccgcccgcagtcgttgcagaggatccatatcatcttcttctggtagaa 513
Query: 376 cgctggcatcgg 387
| | ||||||||
Sbjct: 514 ctccggcatcgg 525
>gb|CD670985.1|CD670985 OsMR406 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 831
Score = 89.7 bits (45), Expect = 2e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 451 gcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaaggcattccaggtggat 510
|||||||||||| | || || || |||||||||||| ||| ||||||||||| |||||
Sbjct: 541 gcacaccgggcaggcgaagtgatgatgcgctctcatcacgttcaggcattccagatggat 482
Query: 511 ggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaatagatactccatgca 570
||||| |||||||| | |||||||| | ||| ||||||| ||||| ||||| | |||
Sbjct: 481 cgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaataggtactcgaagca 422
Query: 571 gacagggcagttgtgatgcat 591
|||||| ||||||||||||||
Sbjct: 421 gacaggacagttgtgatgcat 401
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 255 tcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaact 314
|||||| ||||||| |||| ||||||||||| || ||||| | ||||| | ||| || |
Sbjct: 737 tcgtctcccgggtggtgtaggagctgcatccgggccacttctccgccagaacgtgaaagt 678
Query: 315 gcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||||| |||||| ||| ||||||||||| |||||||||| |||||||||||
Sbjct: 677 tcacgttcgacgtcgcgcggcagtcgttgcagaggatccatatcatcttcttct 624
>dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C17, full
insert sequence
Length = 1095
Score = 89.7 bits (45), Expect = 2e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 451 gcacaccgggcatgaaaactgctggtgcgctctcatctcgtaaaggcattccaggtggat 510
|||||||||||| | || || || |||||||||||| ||| ||||||||||| |||||
Sbjct: 712 gcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcaggcattccagatggat 653
Query: 511 ggtgtgtccgcagtggagcacgctgatagctttcatcgagtcgaatagatactccatgca 570
||||| |||||||| | |||||||| | ||| ||||||| ||||| ||||| | |||
Sbjct: 652 cgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaataggtactcgaagca 593
Query: 571 gacagggcagttgtgatgcat 591
|||||| ||||||||||||||
Sbjct: 592 gacaggacagttgtgatgcat 572
>gb|CB662393.1|CB662393 OSJNEd06F24.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06F24 5', mRNA sequence
Length = 853
Score = 87.7 bits (44), Expect = 6e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 454 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 395
Query: 536 atagctttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|| | ||| ||||||| ||||| ||||| | ||||||||| ||||||||||||||
Sbjct: 394 atgtccttcgtcgagtcaaataggtactcgaagcagacaggacagttgtgatgcat 339
>gb|CB662394.1|CB662394 OSJNEd06F24.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06F24 3', mRNA sequence
Length = 777
Score = 87.7 bits (44), Expect = 6e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 476 tgcgctctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctg 535
|||||||||||| ||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 454 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 395
Query: 536 atagctttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|| | ||| ||||||| ||||| ||||| | ||||||||| ||||||||||||||
Sbjct: 394 atgtccttcgtcgagtcaaataggtactcgaagcagacaggacagttgtgatgcat 339
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
complete sequence
Length = 106057
Score = 65.9 bits (33), Expect = 2e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 481 tctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtg 525
|||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 105902 tctcatctcgtataggcattccagatggatcgtgtgtccgcagtg 105858
>gb|AU100776.1|AU100776 AU100776 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30610, mRNA sequence
Length = 858
Score = 61.9 bits (31), Expect = 4e-007
Identities = 134/166 (80%), Gaps = 2/166 (1%)
Strand = Plus / Minus
Query: 428 gacatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatc 487
||||||| |||||| ||||| |||||||||||| | || || || ||||||||||||
Sbjct: 720 gacatgtcgcaggccgaccttgagcacaccgggcaagcgaagtgatgatgcgctctcatc 661
Query: 488 tcgtaa-aggcattcc-aggtggatggtgtgtccgcagtggagcacgctgatagctttca 545
||| ||||||||| || ||||| ||||| |||||||| | || ||||| | |||
Sbjct: 660 acgtttcaggcattcccagatggatcgtgtgcccgcagtgcaagacnctgatgtccttcg 601
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||| ||||| | ||||||||| ||||||||||||||
Sbjct: 600 tcgagtcaaataggtactcgaagcagacaggacagttgtgatgcat 555
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 585,807
Number of Sequences: 438736
Number of extensions: 585807
Number of successful extensions: 10561
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10195
Number of HSP's gapped (non-prelim): 354
length of query: 592
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 571
effective length of database: 2,791,206,460
effective search space: 1593778888660
effective search space used: 1593778888660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)