BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3089980.2.1
(540 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01000537.1| Oryza sativa (japonica cultivar-group) c... 46 0.019
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.019
ref|NM_188682.1| Oryza sativa (japonica cultivar-group), Oz... 46 0.019
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 46 0.019
dbj|AP001539.1| Oryza sativa (japonica cultivar-group) geno... 46 0.019
dbj|AP002855.2| Oryza sativa (japonica cultivar-group) geno... 46 0.019
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.019
ref|NM_195139.1| Oryza sativa (japonica cultivar-group) unk... 44 0.077
ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chr... 44 0.077
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.077
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.077
gb|AQ859489.1|AQ859489 nbeb0012F20f CUGI Rice BAC Library (... 42 0.30
gb|AZ133085.1|AZ133085 OSJNBb0108O16f CUGI Rice BAC Library... 42 0.30
dbj|AP003844.1| Oryza sativa (japonica cultivar-group) chro... 42 0.30
dbj|AP003860.1| Oryza sativa (japonica cultivar-group) chro... 42 0.30
dbj|AP004692.2| Oryza sativa (japonica cultivar-group) geno... 42 0.30
dbj|AP005165.4| Oryza sativa (japonica cultivar-group) geno... 42 0.30
gb|AACV01015070.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
gb|AACV01017428.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
ref|XM_480381.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.30
ref|NM_188684.1| Oryza sativa (japonica cultivar-group), p... 42 0.30
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.30
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.30
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.30
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.30
>gb|AACV01000537.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000537, whole
genome shotgun sequence
Length = 21105
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 19961 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 20007
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 7599638 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 7599684
>ref|NM_188682.1| Oryza sativa (japonica cultivar-group), Ozsa8285 predicted mRNA
Length = 906
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 879 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 833
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 7599478 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 7599524
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0708G02
Length = 168976
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 150648 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 150694
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0086P08
Length = 145312
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 12432 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 12478
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 7677128 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 7677174
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 7677128 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 7677174
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 162 gacggtgacgtagttgacgtccgggtagagctccgtggcctcgacgc 208
|||||||||||| | | ||||||||| |||||||| ||||||||||
Sbjct: 7601856 gacggtgacgtactccatgtccgggtacagctccgtcgcctcgacgc 7601902
>ref|NM_195139.1| Oryza sativa (japonica cultivar-group) unknown protein
(OSJNBa0051J07.11), mRNA
Length = 567
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 cgacgccgccggcctcggcgtcgacg 228
||||||||||||||||| ||||||||
Sbjct: 81 cgacgccgccggcctcgccgtcgacg 56
>ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2697502
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 cgacgccgccggcctcggcgtcgacg 228
||||||||||||||||| ||||||||
Sbjct: 925806 cgacgccgccggcctcgccgtcgacg 925781
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 cgacgccgccggcctcggcgtcgacg 228
||||||||||||||||| ||||||||
Sbjct: 4928979 cgacgccgccggcctcgccgtcgacg 4928954
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 cgacgccgccggcctcggcgtcgacg 228
||||||||||||||||| ||||||||
Sbjct: 4929766 cgacgccgccggcctcgccgtcgacg 4929741
>gb|AQ859489.1|AQ859489 nbeb0012F20f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0012F20f, DNA sequence
Length = 487
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 336 cgcagacgccggcgacgacgg 356
>gb|AZ133085.1|AZ133085 OSJNBb0108O16f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0108O16f, DNA
sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 222 cgcagacgccggcgacgacgg 202
>dbj|AP003844.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1656_F06,
*** SEQUENCING IN PROGRESS ***
Length = 104481
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 atacagtagtacgtatatata 91
|||||||||||||||||||||
Sbjct: 88042 atacagtagtacgtatatata 88022
>dbj|AP003860.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1036_F08,
*** SEQUENCING IN PROGRESS ***
Length = 157006
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 97952 cgcagacgccggcgacgacgg 97932
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0455A11
Length = 158629
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 99245 cgcagacgccggcgacgacgg 99265
>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0057M23
Length = 168029
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 atacagtagtacgtatatata 91
|||||||||||||||||||||
Sbjct: 88661 atacagtagtacgtatatata 88641
>gb|AACV01015070.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015070,
whole genome shotgun sequence
Length = 15063
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 atacagtagtacgtatatata 91
|||||||||||||||||||||
Sbjct: 458 atacagtagtacgtatatata 438
>gb|AACV01017428.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017428, whole
genome shotgun sequence
Length = 11146
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 1200 cgcagacgccggcgacgacgg 1220
>ref|XM_480381.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1416
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 116 cgcagacgccggcgacgacgg 136
>ref|NM_188684.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 933
Score = 42.1 bits (21), Expect = 0.30
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 480 catgtccgcctcgtgcacgaagatggcgcgcgtggcgtcgtccccgaagacggtggc 536
||||||| ||||| |||||||||||| ||| || |||||| ||| ||||||||||
Sbjct: 582 catgtccttctcgtccacgaagatggctcgctgggtgtcgtcgccgtagacggtggc 526
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 atacagtagtacgtatatata 91
|||||||||||||||||||||
Sbjct: 1180991 atacagtagtacgtatatata 1180971
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 4508755 cgcagacgccggcgacgacgg 4508775
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 4607565 cgcagacgccggcgacgacgg 4607585
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055 genomic
scaffold, whole genome shotgun sequence
Length = 1431804
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 atacagtagtacgtatatata 91
|||||||||||||||||||||
Sbjct: 1243771 atacagtagtacgtatatata 1243751
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 4607565 cgcagacgccggcgacgacgg 4607585
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 atacagtagtacgtatatata 91
|||||||||||||||||||||
Sbjct: 1243771 atacagtagtacgtatatata 1243751
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 atacagtagtacgtatatata 91
|||||||||||||||||||||
Sbjct: 1187054 atacagtagtacgtatatata 1187034
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 236 cgcagacgccggcgacgacgg 256
|||||||||||||||||||||
Sbjct: 4741229 cgcagacgccggcgacgacgg 4741249
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 995,900
Number of Sequences: 438736
Number of extensions: 995900
Number of successful extensions: 33469
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32469
Number of HSP's gapped (non-prelim): 1000
length of query: 540
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 519
effective length of database: 2,791,206,460
effective search space: 1448636152740
effective search space used: 1448636152740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)