BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA... 394 e-107
dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA... 387 e-105
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 351 4e-094
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 351 4e-094
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 351 4e-094
gb|AACV01023313.1| Oryza sativa (japonica cultivar-group) c... 351 4e-094
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 351 4e-094
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 351 4e-094
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 351 4e-094
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 351 4e-094
gb|CF325257.1|CF325257 JMT1--02-L23.g1 AtJMT-overexpressing... 226 1e-056
gb|AU066253.1|AU066253 AU066253 Rice shoot Oryza sativa (ja... 176 1e-041
gb|AU161651.1|AU161651 AU161651 Rice shoot Oryza sativa (ja... 149 3e-033
gb|AU066184.1|AU066184 AU066184 Rice shoot Oryza sativa (ja... 131 6e-028
dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA... 125 4e-026
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 125 4e-026
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 125 4e-026
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 125 4e-026
gb|AU161552.1|AU161552 AU161552 Rice shoot Oryza sativa (ja... 121 6e-025
gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (j... 119 2e-024
gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing... 119 2e-024
dbj|AP003953.1| Oryza sativa (japonica cultivar-group) chro... 105 4e-020
dbj|AK073731.1| Oryza sativa (japonica cultivar-group) cDNA... 105 4e-020
dbj|AP004674.2| Oryza sativa (japonica cultivar-group) geno... 105 4e-020
gb|AACV01016440.1| Oryza sativa (japonica cultivar-group) c... 105 4e-020
ref|XM_478514.1| Oryza sativa (japonica cultivar-group), mRNA 105 4e-020
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 105 4e-020
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 105 4e-020
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 105 4e-020
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 105 4e-020
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 103 1e-019
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA... 82 5e-013
dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA... 82 5e-013
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 78 8e-012
gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) c... 78 8e-012
ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA 78 8e-012
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 78 8e-012
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 78 8e-012
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 78 8e-012
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 78 8e-012
gb|AU075356.1|AU075356 AU075356 Rice callus Oryza sativa (j... 74 1e-010
dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
ref|XM_473788.1| Oryza sativa (japonica cultivar-group), p... 74 1e-010
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 74 1e-010
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromoso... 74 1e-010
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
gb|AACV01010531.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 64 1e-007
emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromoso... 64 1e-007
gb|AU070628.1|AU070628 AU070628 Rice shoot Oryza sativa (ja... 58 8e-006
gb|AU222810.1|AU222810 AU222810 Rice shoot Oryza sativa (ja... 58 8e-006
gb|AU222868.1|AU222868 AU222868 Rice shoot Oryza sativa (ja... 58 8e-006
gb|AU223066.1|AU223066 AU223066 Rice shoot Oryza sativa (ja... 58 8e-006
gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (j... 58 8e-006
gb|AU173166.1|AU173166 AU173166 Rice root Oryza sativa (jap... 54 1e-004
gb|AU058117.1|AU058117 AU058117 Rice etiolated shoot Oryza ... 52 5e-004
gb|AU097144.1|AU097144 AU097144 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (ja... 50 0.002
dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
gb|AACV01010434.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|XM_473787.1| Oryza sativa (japonica cultivar-group), p... 48 0.007
gb|AU070542.1|AU070542 AU070542 Rice shoot Oryza sativa (ja... 46 0.029
dbj|AP004026.3| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AP003989.4| Oryza sativa (japonica cultivar-group) geno... 46 0.029
gb|AC137620.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|AACV01005665.1| Oryza sativa (japonica cultivar-group) c... 46 0.029
gb|AACV01012150.1| Oryza sativa (japonica cultivar-group) c... 46 0.029
ref|XM_468468.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.029
ref|XM_475229.1| Oryza sativa (japonica cultivar-group), p... 46 0.029
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 46 0.029
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 46 0.029
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.029
gb|AU030804.1|AU030804 AU030804 Rice cDNA from immature lea... 44 0.11
gb|AU174270.1|AU174270 AU174270 Rice shoot Oryza sativa (ja... 44 0.11
gb|AU182333.1|AU182333 AU182333 Rice panicle at flowering s... 44 0.11
gb|AU183251.1|AU183251 AU183251 Rice cDNA from immature lea... 44 0.11
gb|CA754118.1|CA754118 BR040009000_PLATE_F01_6_013.ab1 OA O... 44 0.11
dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AP004872.2| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP005398.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AACV01003896.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|NM_187323.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|XM_473793.1| Oryza sativa (japonica cultivar-group), p... 44 0.11
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 44 0.11
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromoso... 44 0.11
gb|CB651563.1|CB651563 OSJNEb16J04.r OSJNEb Oryza sativa (j... 42 0.45
dbj|AP003839.1| Oryza sativa (japonica cultivar-group) chro... 42 0.45
gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O1... 42 0.45
gb|AACV01016188.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01022039.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
ref|NM_197613.1| Oryza sativa (japonica cultivar-group) put... 42 0.45
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 42 0.45
dbj|AP004299.2| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full
insert sequence
Length = 977
Score = 394 bits (199), Expect = e-107
Identities = 301/333 (90%), Gaps = 4/333 (1%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 815 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 756
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 755 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 696
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 695 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 636
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 635 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 576
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 575 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 519
Query: 754 aacgcgatcatgttagaggttccagaggacgga 786
|||||||||||| ||||||||||||||||||||
Sbjct: 518 aacgcgatcatg-tagaggttccagaggacgga 487
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 915 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 859
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 858 gtcgcagtagttgtagatggtgt 836
>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full
insert sequence
Length = 1053
Score = 387 bits (195), Expect = e-105
Identities = 300/333 (90%), Gaps = 4/333 (1%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 812 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 753
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || ||||||| || ||||||||||| ||||||||||||||
Sbjct: 752 ccctgggtggcgcagtaccggtcctccgccgacgcctcgcagccatcgacgtggaagccc 693
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 692 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 633
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 632 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 573
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 572 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 516
Query: 754 aacgcgatcatgttagaggttccagaggacgga 786
|||||||||||| ||||||||||||||||||||
Sbjct: 515 aacgcgatcatg-tagaggttccagaggacgga 484
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 912 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 856
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 855 gtcgcagtagttgtagatggtgt 833
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0007D07, complete sequence
Length = 133930
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 15299 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 15240
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 15239 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 15180
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 15179 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 15120
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15119 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 15060
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 15059 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 15003
Query: 754 aac 756
|||
Sbjct: 15002 aac 15000
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 15399 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 15343
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 15342 gtcgcagtagttgtagatggtgt 15320
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 13267 acgcgatcatgt-agaggttccagaggacgga 13237
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
complete sequence
Length = 148829
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 115680 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 115621
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 115620 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 115561
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 115560 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 115501
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 115500 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 115441
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 115440 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 115384
Query: 754 aac 756
|||
Sbjct: 115383 aac 115381
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 115780 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 115724
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 115723 gtcgcagtagttgtagatggtgt 115701
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 113648 acgcgatcatgt-agaggttccagaggacgga 113618
>ref|NT_107129.1| Oryza sativa (japonica cultivar-group)
Length = 234310
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 115680 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 115621
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 115620 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 115561
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 115560 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 115501
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 115500 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 115441
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 115440 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 115384
Query: 754 aac 756
|||
Sbjct: 115383 aac 115381
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 115780 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 115724
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 115723 gtcgcagtagttgtagatggtgt 115701
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 113648 acgcgatcatgt-agaggttccagaggacgga 113618
>gb|AACV01023313.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023313, whole
genome shotgun sequence
Length = 37775
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Plus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 16897 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 16956
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 16957 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 17016
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 17017 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 17076
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 17077 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 17136
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 17137 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 17193
Query: 754 aac 756
|||
Sbjct: 17194 aac 17196
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 16797 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 16853
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 16854 gtcgcagtagttgtagatggtgt 16876
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 18929 acgcgatcatgt-agaggttccagaggacgga 18959
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 1721208 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 1721149
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 1721148 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 1721089
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 1721088 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 1721029
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1721028 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 1720969
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 1720968 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 1720912
Query: 754 aac 756
|||
Sbjct: 1720911 aac 1720909
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 1721308 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 1721252
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 1721251 gtcgcagtagttgtagatggtgt 1721229
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 1719176 acgcgatcatgt-agaggttccagaggacgga 1719146
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 15886190 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 15886131
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 15886130 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 15886071
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 15886070 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 15886011
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15886010 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 15885951
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 15885950 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 15885894
Query: 754 aac 756
|||
Sbjct: 15885893 aac 15885891
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 15886290 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 15886234
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 15886233 gtcgcagtagttgtagatggtgt 15886211
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 15884158 acgcgatcatgt-agaggttccagaggacgga 15884128
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 19012482 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 19012423
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 19012422 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 19012363
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 19012362 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 19012303
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 19012302 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 19012243
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 19012242 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 19012186
Query: 754 aac 756
|||
Sbjct: 19012185 aac 19012183
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 19012582 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 19012526
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 19012525 gtcgcagtagttgtagatggtgt 19012503
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 19010450 acgcgatcatgt-agaggttccagaggacgga 19010420
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 351 bits (177), Expect = 4e-094
Identities = 272/303 (89%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 19171131 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 19171072
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccg 573
||||||||||||||| | || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 19171071 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgtggaagccc 19171012
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 19171011 cggtaggaggcgacgaacggcgcccgcgaccagtcggtcttctcccgcccgccgcgggtg 19170952
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtac 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 19170951 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggttgaacgggtac 19170892
Query: 694 cgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaag 753
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||||
Sbjct: 19170891 cgcacgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaag 19170835
Query: 754 aac 756
|||
Sbjct: 19170834 aac 19170832
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 19171231 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 19171175
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 19171174 gtcgcagtagttgtagatggtgt 19171152
Score = 48.1 bits (24), Expect = 0.007
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 19169099 acgcgatcatgt-agaggttccagaggacgga 19169069
>gb|CF325257.1|CF325257 JMT1--02-L23.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--02-L23, mRNA sequence
Length = 562
Score = 226 bits (114), Expect = 1e-056
Identities = 156/168 (92%), Gaps = 4/168 (2%)
Strand = Plus / Minus
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cgcccgccgcgggtggcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 500
Query: 679 tggctgaacgggtaccgcacgcccaggtcggcgctcgtgttcttgaacacccggatcggc 738
||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 499 tggttgaacgggtaccgcacgcccaggtccttgc---tgttcttgaacaccctgatcggc 443
Query: 739 acgtcgtccacgaagaacgcgatcatgttagaggttccagaggacgga 786
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 442 gtgtcgtccacgaagaacgcgatcatg-tagaggttccagaggacgga 396
>gb|AU066253.1|AU066253 AU066253 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5915_1A, mRNA sequence
Length = 323
Score = 176 bits (89), Expect = 1e-041
Identities = 135/149 (90%), Gaps = 4/149 (2%)
Strand = Plus / Minus
Query: 638 agtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgca 697
|||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 314 agtcgtcgnngttccacaggctgaagtagagcttcatcggctggttgaacgggtaccgca 255
Query: 698 cgcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacg 757
|||||||||| || ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 254 cgcccaggtccttgc---tgttcttgaacaccctgatcggcgtgtcgtccacgaagaacg 198
Query: 758 cgatcatgttagaggttccagaggacgga 786
|||||||| ||||||||||||||||||||
Sbjct: 197 cgatcatg-tagaggttccagaggacgga 170
>gb|AU161651.1|AU161651 AU161651 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2134, mRNA sequence
Length = 589
Score = 149 bits (75), Expect = 3e-033
Identities = 123/138 (89%), Gaps = 1/138 (0%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||
Sbjct: 141 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggcg 82
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcc-tcgcagccgtcgacgtggaagcc 572
|||||||||||||| | || |||||||| || ||| |||||||| ||||||||||||||
Sbjct: 81 ccctgggtggcgcantaccgggcctccgccgacgccttcgcagccatcgacgtggaagcc 22
Query: 573 gcggtaggaggcgacgaa 590
|||||||||||||||||
Sbjct: 21 ccggtaggaggcgacgaa 4
Score = 52.0 bits (26), Expect = 5e-004
Identities = 69/83 (83%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 241 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 185
Query: 411 ggtgcagtagttgtagatggtgt 433
| |||||| |||||||||||||
Sbjct: 184 gtcgcagtanttgtagatggtgt 162
>gb|AU066184.1|AU066184 AU066184 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5475_1A, mRNA sequence
Length = 289
Score = 131 bits (66), Expect = 6e-028
Identities = 110/123 (89%), Gaps = 4/123 (3%)
Strand = Plus / Minus
Query: 664 tagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggcgctcgtgttcttg 723
|||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct: 289 tagagcntcatcggctggttgaacgggtaccgcacgcccaggtccttgct---gttcttg 233
Query: 724 aacacccggatcggcacgtcgtccacgaagaacgcgatcatgttagaggttccagaggac 783
||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 232 aacaccctgatcggcgtgtcgtccacgaagaaagcgatcatg-tagaggttccagaggac 174
Query: 784 gga 786
|||
Sbjct: 173 gga 171
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
insert sequence
Length = 1253
Score = 125 bits (63), Expect = 4e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| || ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 770 cgcaggcgtcggcgcggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccg 711
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| |||| || || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tcttgacgcgtccaccctgcgtcgcccagtcgtcggcgttccacaggctggagtagagcc 651
Query: 671 tcatcggctgg 681
|||||||||||
Sbjct: 650 tcatcggctgg 640
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 407 gatcggtgcagtagttgtagat 428
||||||||||||||||||||||
Sbjct: 947 gatcggtgcagtagttgtagat 926
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 125 bits (63), Expect = 4e-026
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| || ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 6238772 cgcaggcgtcggcgcggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccg 6238831
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| |||| || || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 6238832 tcttgacgcgtccaccctgcgtcgcccagtcgtcggcgttccacaggctggagtagagcc 6238891
Query: 671 tcatcggctgg 681
|||||||||||
Sbjct: 6238892 tcatcggctgg 6238902
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 6215956 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 6215897
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 6215896 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 6215848
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 407 gatcggtgcagtagttgtagat 428
||||||||||||||||||||||
Sbjct: 6238595 gatcggtgcagtagttgtagat 6238616
Score = 42.1 bits (21), Expect = 0.45
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 573 gcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggt 632
|||||| | ||||||||| |||||| |||||||||||||| |||| ||||| | ||
Sbjct: 6220857 gcggtacgtggcgacgaacggcgcgcgcgaccagtccgtcttgacgcggccgccctgcgt 6220798
Query: 633 cgcccagtcgtcggcgttcca 653
|||||| || || ||||||||
Sbjct: 6220797 cgcccactcctccgcgttcca 6220777
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 125 bits (63), Expect = 4e-026
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| || ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 81062 cgcaggcgtcggcgcggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccg 81121
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| |||| || || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 81122 tcttgacgcgtccaccctgcgtcgcccagtcgtcggcgttccacaggctggagtagagcc 81181
Query: 671 tcatcggctgg 681
|||||||||||
Sbjct: 81182 tcatcggctgg 81192
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 58246 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 58187
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 58186 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 58138
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 407 gatcggtgcagtagttgtagat 428
||||||||||||||||||||||
Sbjct: 80885 gatcggtgcagtagttgtagat 80906
Score = 42.1 bits (21), Expect = 0.45
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 573 gcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggt 632
|||||| | ||||||||| |||||| |||||||||||||| |||| ||||| | ||
Sbjct: 63147 gcggtacgtggcgacgaacggcgcgcgcgaccagtccgtcttgacgcggccgccctgcgt 63088
Query: 633 cgcccagtcgtcggcgttcca 653
|||||| || || ||||||||
Sbjct: 63087 cgcccactcctccgcgttcca 63067
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 125 bits (63), Expect = 4e-026
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| || ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 28773287 cgcaggcgtcggcgcggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccg 28773346
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagct 670
|||| |||| || || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 28773347 tcttgacgcgtccaccctgcgtcgcccagtcgtcggcgttccacaggctggagtagagcc 28773406
Query: 671 tcatcggctgg 681
|||||||||||
Sbjct: 28773407 tcatcggctgg 28773417
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 28750471 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 28750412
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 28750411 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 28750363
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 407 gatcggtgcagtagttgtagat 428
||||||||||||||||||||||
Sbjct: 28773110 gatcggtgcagtagttgtagat 28773131
Score = 42.1 bits (21), Expect = 0.45
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 573 gcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggt 632
|||||| | ||||||||| |||||| |||||||||||||| |||| ||||| | ||
Sbjct: 28755372 gcggtacgtggcgacgaacggcgcgcgcgaccagtccgtcttgacgcggccgccctgcgt 28755313
Query: 633 cgcccagtcgtcggcgttcca 653
|||||| || || ||||||||
Sbjct: 28755312 cgcccactcctccgcgttcca 28755292
>gb|AU161552.1|AU161552 AU161552 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0640, mRNA sequence
Length = 558
Score = 121 bits (61), Expect = 6e-025
Identities = 99/112 (88%)
Strand = Plus / Minus
Query: 454 aggcggcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcg 513
|||||||||||||| ||||||||||||| | ||||||||||||||||||||| || | |
Sbjct: 112 aggcggcggtactggtcggcgtcgaggtcgcggaactccggctggtcccaccaccgggng 53
Query: 514 ccctgggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgt 565
||||||||||||||| | || |||||||| || ||||||||||| |||||||
Sbjct: 52 ccctgggtggcgcagtaccgggcctccgccgacgcctcgcagccatcgacgt 1
Score = 58.0 bits (29), Expect = 8e-006
Identities = 70/83 (84%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||| |||||||||||||| ||||||||||| || ||||| | ||||| ||||| ||
Sbjct: 212 tcaggcgtcgcggtcgcggtggcactcgggcgacatggcgggg---tagcgttcgcggtc 156
Query: 411 ggtgcagtagttgtagatggtgt 433
| ||||||||||||||||||||
Sbjct: 155 gtcgcagtagttgtagatggtgt 133
>gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05G07 5', mRNA sequence
Length = 753
Score = 119 bits (60), Expect = 2e-024
Identities = 102/116 (87%)
Strand = Plus / Minus
Query: 566 ggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgc 625
||||||||||||||||||| ||||||||||| | |||||||||||| |||| || |
Sbjct: 746 ggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccgtcttgacgcgtccac 687
Query: 626 cgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggctgg 681
| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 686 catgcgtcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctgg 631
>gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-C17, mRNA sequence
Length = 475
Score = 119 bits (60), Expect = 2e-024
Identities = 102/116 (87%)
Strand = Plus / Minus
Query: 566 ggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgc 625
||||||||||||||||||| ||||||||||| | |||||||||||| |||| || |
Sbjct: 471 ggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccgtcttgacgcgtccac 412
Query: 626 cgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggctgg 681
| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 cctgcgtcgcccagtcgtcggcgttccacaggctggagtagagcctcatcggctgg 356
>dbj|AP003953.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1365_D04,
*** SEQUENCING IN PROGRESS ***
Length = 105692
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 17407 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 17348
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 17347 gcgcgtcgcccagtcgtcggcgttccagatgctggag 17311
>dbj|AK073731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064P12, full
insert sequence
Length = 1707
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 1281 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 1222
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 1221 gcgcgtcgcccagtcgtcggcgttccagatgctggag 1185
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0681F05
Length = 144741
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 29960 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 29901
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 29900 gcgcgtcgcccagtcgtcggcgttccagatgctggag 29864
>gb|AACV01016440.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016440, whole
genome shotgun sequence
Length = 70751
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 66903 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 66962
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 66963 gcgcgtcgcccagtcgtcggcgttccagatgctggag 66999
>ref|XM_478514.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 930
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 702 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 643
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 642 gcgcgtcgcccagtcgtcggcgttccagatgctggag 606
Score = 42.1 bits (21), Expect = 0.45
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 730 cggatcggcacgtcgtccacgaagaacgcgatc 762
||||||||||| | ||||||||||||| |||||
Sbjct: 542 cggatcggcaccttgtccacgaagaacacgatc 510
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 8290215 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 8290156
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 8290155 gcgcgtcgcccagtcgtcggcgttccagatgctggag 8290119
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 732 gatcggcacgtcgtccacgaa 752
|||||||||||||||||||||
Sbjct: 5061643 gatcggcacgtcgtccacgaa 5061623
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 6172995 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 6172936
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 6172935 gcgcgtcgcccagtcgtcggcgttccagatgctggag 6172899
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 732 gatcggcacgtcgtccacgaa 752
|||||||||||||||||||||
Sbjct: 3136287 gatcggcacgtcgtccacgaa 3136267
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 19572434 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 19572375
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 19572374 gcgcgtcgcccagtcgtcggcgttccagatgctggag 19572338
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 732 gatcggcacgtcgtccacgaa 752
|||||||||||||||||||||
Sbjct: 16535726 gatcggcacgtcgtccacgaa 16535706
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 105 bits (53), Expect = 4e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||
Sbjct: 20677210 gaagtcgcggtaggaggagatgaacggcgccttggtccagtccgtcttctccagcccgcc 20677151
Query: 627 gcgggtcgcccagtcgtcggcgttccacaggctggag 663
||| ||||||||||||||||||||||| | |||||||
Sbjct: 20677150 gcgcgtcgcccagtcgtcggcgttccagatgctggag 20677114
Score = 42.1 bits (21), Expect = 0.45
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 732 gatcggcacgtcgtccacgaa 752
|||||||||||||||||||||
Sbjct: 17438568 gatcggcacgtcgtccacgaa 17438548
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 103 bits (52), Expect = 1e-019
Identities = 110/128 (85%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| || ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 23043 cgcaggcgtcggcgcggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccg 22984
Query: 611 tcttctcgcgcccgccgcgggtcgccc-agtcgtcggcgttccacaggctggagtagagc 669
|||| |||| || || | ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 22983 tcttgacgcgtccaccctgcgtcgcccgagtcgtcggcgttccacaggctggagtagagc 22924
Query: 670 ttcatcgg 677
|||||||
Sbjct: 22923 ctcatcgg 22916
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 45862 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 45921
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 45922 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 45970
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 407 gatcggtgcagtagttgtagat 428
||||||||||||||||||||||
Sbjct: 23220 gatcggtgcagtagttgtagat 23199
Score = 42.1 bits (21), Expect = 0.45
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 573 gcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggt 632
|||||| | ||||||||| |||||| |||||||||||||| |||| ||||| | ||
Sbjct: 40961 gcggtacgtggcgacgaacggcgcgcgcgaccagtccgtcttgacgcggccgccctgcgt 41020
Query: 633 cgcccagtcgtcggcgttcca 653
|||||| || || ||||||||
Sbjct: 41021 cgcccactcctccgcgttcca 41041
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 103 bits (52), Expect = 1e-019
Identities = 110/128 (85%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| || ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 10151608 cgcaggcgtcggcgcggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccg 10151667
Query: 611 tcttctcgcgcccgccgcgggtcgccc-agtcgtcggcgttccacaggctggagtagagc 669
|||| |||| || || | ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10151668 tcttgacgcgtccaccctgcgtcgcccgagtcgtcggcgttccacaggctggagtagagc 10151727
Query: 670 ttcatcgg 677
|||||||
Sbjct: 10151728 ctcatcgg 10151735
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 10128789 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 10128730
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 10128729 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 10128681
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 407 gatcggtgcagtagttgtagat 428
||||||||||||||||||||||
Sbjct: 10151431 gatcggtgcagtagttgtagat 10151452
Score = 42.1 bits (21), Expect = 0.45
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 573 gcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggt 632
|||||| | ||||||||| |||||| |||||||||||||| |||| ||||| | ||
Sbjct: 10133690 gcggtacgtggcgacgaacggcgcgcgcgaccagtccgtcttgacgcggccgccctgcgt 10133631
Query: 633 cgcccagtcgtcggcgttcca 653
|||||| || || ||||||||
Sbjct: 10133630 cgcccactcctccgcgttcca 10133610
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 103 bits (52), Expect = 1e-019
Identities = 110/128 (85%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| || ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 27850345 cgcaggcgtcggcgcggaagccgcggtaggaggccgagaagggcgcgtgcgtccagtccg 27850404
Query: 611 tcttctcgcgcccgccgcgggtcgccc-agtcgtcggcgttccacaggctggagtagagc 669
|||| |||| || || | ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 27850405 tcttgacgcgtccaccctgcgtcgcccgagtcgtcggcgttccacaggctggagtagagc 27850464
Query: 670 ttcatcgg 677
|||||||
Sbjct: 27850465 ctcatcgg 27850472
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 27827526 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 27827467
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 27827466 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 27827418
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 407 gatcggtgcagtagttgtagat 428
||||||||||||||||||||||
Sbjct: 27850168 gatcggtgcagtagttgtagat 27850189
Score = 42.1 bits (21), Expect = 0.45
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 573 gcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggt 632
|||||| | ||||||||| |||||| |||||||||||||| |||| ||||| | ||
Sbjct: 27832427 gcggtacgtggcgacgaacggcgcgcgcgaccagtccgtcttgacgcggccgccctgcgt 27832368
Query: 633 cgcccagtcgtcggcgttcca 653
|||||| || || ||||||||
Sbjct: 27832367 cgcccactcctccgcgttcca 27832347
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full
insert sequence
Length = 1208
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 763 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 704
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 703 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 655
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full
insert sequence
Length = 1208
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 763 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 704
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 703 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 655
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 81.8 bits (41), Expect = 5e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 551 cgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccg 610
||||| ||||| ||| |||| ||||| |||||||||||||||| || ||| ||||||||
Sbjct: 151037 cgcaggcgtcggcgttgaagtcgcggaaggaggcgacgaagggggccttgctccagtccg 150978
Query: 611 tcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
||| |||| ||||| | |||||||||||||| ||||||||||||||
Sbjct: 150977 ccttgacgcggccgccctgcgtcgcccagtcgtccgcgttccacaggct 150929
Score = 42.1 bits (21), Expect = 0.45
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 573 gcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggt 632
|||||| | ||||||||| |||||| |||||||||||||| |||| ||||| | ||
Sbjct: 155938 gcggtacgtggcgacgaacggcgcgcgcgaccagtccgtcttgacgcggccgccctgcgt 155879
Query: 633 cgcccagtcgtcggcgttcca 653
|||||| || || ||||||||
Sbjct: 155878 cgcccactcctccgcgttcca 155858
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 77.8 bits (39), Expect = 8e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||| |||||| || | ||||||||||||||| | | |||||| | |||
Sbjct: 118541 cggtagtaggcgaagaagggtgcctccgaccagtccgtcttcaccctcccgccctgcgtc 118600
Query: 634 gcccagtcgtcggcgttccacaggctg 660
|||||||||||||||||||||||||||
Sbjct: 118601 gcccagtcgtcggcgttccacaggctg 118627
>gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017696, whole
genome shotgun sequence
Length = 20538
Score = 77.8 bits (39), Expect = 8e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||| |||||| || | ||||||||||||||| | | |||||| | |||
Sbjct: 2612 cggtagtaggcgaagaagggtgcctccgaccagtccgtcttcaccctcccgccctgcgtc 2671
Query: 634 gcccagtcgtcggcgttccacaggctg 660
|||||||||||||||||||||||||||
Sbjct: 2672 gcccagtcgtcggcgttccacaggctg 2698
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 906
Score = 77.8 bits (39), Expect = 8e-012
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||| |||||| || | ||||||||||||||| | | |||||| | |||
Sbjct: 701 cggtagtaggcgaagaagggtgcctccgaccagtccgtcttcaccctcccgccctgcgtc 642
Query: 634 gcccagtcgtcggcgttccacaggctg 660
|||||||||||||||||||||||||||
Sbjct: 641 gcccagtcgtcggcgttccacaggctg 615
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 77.8 bits (39), Expect = 8e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||| |||||| || | ||||||||||||||| | | |||||| | |||
Sbjct: 8145958 cggtagtaggcgaagaagggtgcctccgaccagtccgtcttcaccctcccgccctgcgtc 8146017
Query: 634 gcccagtcgtcggcgttccacaggctg 660
|||||||||||||||||||||||||||
Sbjct: 8146018 gcccagtcgtcggcgttccacaggctg 8146044
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 77.8 bits (39), Expect = 8e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||| |||||| || | ||||||||||||||| | | |||||| | |||
Sbjct: 133616 cggtagtaggcgaagaagggtgcctccgaccagtccgtcttcaccctcccgccctgcgtc 133675
Query: 634 gcccagtcgtcggcgttccacaggctg 660
|||||||||||||||||||||||||||
Sbjct: 133676 gcccagtcgtcggcgttccacaggctg 133702
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 77.8 bits (39), Expect = 8e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||| |||||| || | ||||||||||||||| | | |||||| | |||
Sbjct: 7735622 cggtagtaggcgaagaagggtgcctccgaccagtccgtcttcaccctcccgccctgcgtc 7735681
Query: 634 gcccagtcgtcggcgttccacaggctg 660
|||||||||||||||||||||||||||
Sbjct: 7735682 gcccagtcgtcggcgttccacaggctg 7735708
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 77.8 bits (39), Expect = 8e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||| |||||| || | ||||||||||||||| | | |||||| | |||
Sbjct: 8378432 cggtagtaggcgaagaagggtgcctccgaccagtccgtcttcaccctcccgccctgcgtc 8378491
Query: 634 gcccagtcgtcggcgttccacaggctg 660
|||||||||||||||||||||||||||
Sbjct: 8378492 gcccagtcgtcggcgttccacaggctg 8378518
>gb|AU075356.1|AU075356 AU075356 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11264_12Z, mRNA sequence
Length = 636
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||| ||||| | |||||||||||||| |||||||||| | || |||||||||
Sbjct: 213 gcgacgaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtcg 154
Query: 643 tcggcgttccacaggct 659
|||||||||||||||||
Sbjct: 153 tcggcgttccacaggct 137
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full
insert sequence
Length = 1109
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||| ||||| | |||||||||||||| |||||||||| | || |||||||||
Sbjct: 725 gcgacgaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtcg 666
Query: 643 tcggcgttccacaggct 659
|||||||||||||||||
Sbjct: 665 tcggcgttccacaggct 649
>gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010435, whole
genome shotgun sequence
Length = 5289
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||| ||||| | |||||||||||||| |||||||||| | || |||||||||
Sbjct: 4965 gcgacgaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtcg 4906
Query: 643 tcggcgttccacaggct 659
|||||||||||||||||
Sbjct: 4905 tcggcgttccacaggct 4889
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 822
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||| ||||| | |||||||||||||| |||||||||| | || |||||||||
Sbjct: 635 gcgacgaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtcg 576
Query: 643 tcggcgttccacaggct 659
|||||||||||||||||
Sbjct: 575 tcggcgttccacaggct 559
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||| ||||| | |||||||||||||| |||||||||| | || |||||||||
Sbjct: 413075 gcgacgaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtcg 413134
Query: 643 tcggcgttccacaggct 659
|||||||||||||||||
Sbjct: 413135 tcggcgttccacaggct 413151
Score = 48.1 bits (24), Expect = 0.007
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 631 gtcgcccagtcgtcggcgttccacaggc 658
||||||||||||||||||| ||||||||
Sbjct: 404515 gtcgcccagtcgtcggcgtcccacaggc 404542
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 622 ccgccgcgggtcgcccagtcgtcggcgttccacaggct 659
|||||||| ||||||||| |||| |||||||||||||
Sbjct: 451397 ccgccgcgcgtcgcccagaagtcgccgttccacaggct 451434
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||| ||||| | |||||||||||||| |||||||||| | || |||||||||
Sbjct: 8235164 gcgacgaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtcg 8235223
Query: 643 tcggcgttccacaggct 659
|||||||||||||||||
Sbjct: 8235224 tcggcgttccacaggct 8235240
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 586 acgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcg 645
||||| ||||||| ||||||||||||||| | |||||||| | ||||||||||||||
Sbjct: 9886833 acgaacggcgcgtgcgaccagtccgtcttcacccgcccgccctgcgtcgcccagtcgtcc 9886774
Query: 646 gcgttcca 653
||||||||
Sbjct: 9886773 gcgttcca 9886766
Score = 48.1 bits (24), Expect = 0.007
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 631 gtcgcccagtcgtcggcgttccacaggc 658
||||||||||||||||||| ||||||||
Sbjct: 8226512 gtcgcccagtcgtcggcgtcccacaggc 8226539
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||| ||||| | |||||||||||||| |||||||||| | || |||||||||
Sbjct: 27379263 gcgacgaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtcg 27379322
Query: 643 tcggcgttccacaggct 659
|||||||||||||||||
Sbjct: 27379323 tcggcgttccacaggct 27379339
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 586 acgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcg 645
||||| ||||||| ||||||||||||||| | |||||||| | ||||||||||||||
Sbjct: 29030932 acgaacggcgcgtgcgaccagtccgtcttcacccgcccgccctgcgtcgcccagtcgtcc 29030873
Query: 646 gcgttcca 653
||||||||
Sbjct: 29030872 gcgttcca 29030865
Score = 48.1 bits (24), Expect = 0.007
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 631 gtcgcccagtcgtcggcgttccacaggc 658
||||||||||||||||||| ||||||||
Sbjct: 27370611 gtcgcccagtcgtcggcgtcccacaggc 27370638
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,085,588
Number of Sequences: 438736
Number of extensions: 1085588
Number of successful extensions: 8068
Number of sequences better than 0.5: 112
Number of HSP's better than 0.5 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7321
Number of HSP's gapped (non-prelim): 703
length of query: 786
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 765
effective length of database: 2,791,206,460
effective search space: 2135272941900
effective search space used: 2135272941900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)