BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493751.2.1
(577 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01020446.1| Oryza sativa (japonica cultivar-group) c... 373 e-101
dbj|AP005314.2| Oryza sativa (japonica cultivar-group) geno... 373 e-101
dbj|AP005092.3| Oryza sativa (japonica cultivar-group) geno... 373 e-101
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 373 e-101
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 373 e-101
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 373 e-101
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 373 e-101
gb|AU077603.1|AU077603 AU077603 Rice panicle (longer than 1... 258 3e-066
gb|CB641093.1|CB641093 OSJNEa17M24.f OSJNEa Oryza sativa (j... 48 0.005
gb|CB641107.1|CB641107 OSJNEa17N23.f OSJNEa Oryza sativa (j... 48 0.005
dbj|AK067284.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AK072943.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
gb|AC147462.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AC137611.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AACV01012288.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|XM_475333.1| Oryza sativa (japonica cultivar-group), p... 48 0.005
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|AACV01003026.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
gb|AACV01026730.1| Oryza sativa (japonica cultivar-group) C... 46 0.021
gb|AACV01026794.1| Oryza sativa (japonica cultivar-group) C... 46 0.021
gb|AACV01028649.1| Oryza sativa (japonica cultivar-group) C... 46 0.021
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.021
ref|NM_189714.1| Oryza sativa (japonica cultivar-group), p... 46 0.021
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 46 0.021
dbj|AP004031.3| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|CH401604.1| Oryza sativa (japonica cultivar-group) scaff... 46 0.021
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|C19561.1|C19561 C19561 Rice panicle at ripening stage Or... 42 0.32
gb|C99291.1|C99291 C99291 Rice panicle at ripening stage Or... 42 0.32
gb|AU070976.1|AU070976 AU070976 Rice cDNA from young root O... 42 0.32
gb|AU092815.1|AU092815 AU092815 Rice callus Oryza sativa (j... 42 0.32
gb|CF292499.1|CF292499 30DGS--01-F14.g1 Rice leaf plasmid c... 42 0.32
gb|CF293844.1|CF293844 30DGS--03-C17.g1 Rice leaf plasmid c... 42 0.32
gb|CF294525.1|CF294525 30DGS--04-B14.g1 Rice leaf plasmid c... 42 0.32
gb|CF335835.1|CF335835 JMT--05-K18.g1 AtJMT-overexpressing ... 42 0.32
dbj|AK063822.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AK102887.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
gb|AACV01002688.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
ref|NM_190624.1| Oryza sativa (japonica cultivar-group), p... 42 0.32
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.32
dbj|AP004072.2| Oryza sativa (japonica cultivar-group) geno... 42 0.32
>gb|AACV01020446.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020446, whole
genome shotgun sequence
Length = 121564
Score = 373 bits (188), Expect = e-101
Identities = 371/432 (85%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||| ||||||||| |||| |||||||| | ||||||||||||| |||||||| |
Sbjct: 57455 cctacccgttcatcagctacgtcaacgaccccgtcaacgtgcagctcggctacgcgctgt 57396
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 57395 tcggcgcgggcgcgccggcggtgagcgacggcgcgctcgtctacaccaacatgttcgacg 57336
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
| ||||| |||||||||| ||||||||| || | |||||||||||||| |||| | |||
Sbjct: 57335 cgacggtggacgcgctggcggccgcgctcgacagggaggggttcggcgccgtgccgatcg 57276
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
||||||| |||||||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 57275 cggtgacggagaccgggtggccgacggcggggcacccggcggcgacaccgcagaacgccg 57216
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| || |||||||||||||| |||||| || ||||||||||| |||||||||| |||||
Sbjct: 57215 ccgcctacaacgccaagatcgtggagcgggtggcgcgcggcgccggcacgccgcggcggc 57156
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 57155 caggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcg 57096
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||| | ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 57095 ccgagttcgagaggcacttcggcatcttcagggcggacgggagcaaggcttataacatca 57036
Query: 426 actttgcctaga 437
||||||| ||||
Sbjct: 57035 actttgcttaga 57024
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0515E01
Length = 140063
Score = 373 bits (188), Expect = e-101
Identities = 371/432 (85%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||| ||||||||| |||| |||||||| | ||||||||||||| |||||||| |
Sbjct: 103298 cctacccgttcatcagctacgtcaacgaccccgtcaacgtgcagctcggctacgcgctgt 103239
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 103238 tcggcgcgggcgcgccggcggtgagcgacggcgcgctcgtctacaccaacatgttcgacg 103179
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
| ||||| |||||||||| ||||||||| || | |||||||||||||| |||| | |||
Sbjct: 103178 cgacggtggacgcgctggcggccgcgctcgacagggaggggttcggcgccgtgccgatcg 103119
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
||||||| |||||||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 103118 cggtgacggagaccgggtggccgacggcggggcacccggcggcgacaccgcagaacgccg 103059
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| || |||||||||||||| |||||| || ||||||||||| |||||||||| |||||
Sbjct: 103058 ccgcctacaacgccaagatcgtggagcgggtggcgcgcggcgccggcacgccgcggcggc 102999
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 102998 caggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcg 102939
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||| | ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 102938 ccgagttcgagaggcacttcggcatcttcagggcggacgggagcaaggcttataacatca 102879
Query: 426 actttgcctaga 437
||||||| ||||
Sbjct: 102878 actttgcttaga 102867
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1112_E07
Length = 132055
Score = 373 bits (188), Expect = e-101
Identities = 371/432 (85%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||| ||||||||| |||| |||||||| | ||||||||||||| |||||||| |
Sbjct: 31251 cctacccgttcatcagctacgtcaacgaccccgtcaacgtgcagctcggctacgcgctgt 31192
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 31191 tcggcgcgggcgcgccggcggtgagcgacggcgcgctcgtctacaccaacatgttcgacg 31132
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
| ||||| |||||||||| ||||||||| || | |||||||||||||| |||| | |||
Sbjct: 31131 cgacggtggacgcgctggcggccgcgctcgacagggaggggttcggcgccgtgccgatcg 31072
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
||||||| |||||||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 31071 cggtgacggagaccgggtggccgacggcggggcacccggcggcgacaccgcagaacgccg 31012
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| || |||||||||||||| |||||| || ||||||||||| |||||||||| |||||
Sbjct: 31011 ccgcctacaacgccaagatcgtggagcgggtggcgcgcggcgccggcacgccgcggcggc 30952
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 30951 caggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcg 30892
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||| | ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 30891 ccgagttcgagaggcacttcggcatcttcagggcggacgggagcaaggcttataacatca 30832
Query: 426 actttgcctaga 437
||||||| ||||
Sbjct: 30831 actttgcttaga 30820
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 373 bits (188), Expect = e-101
Identities = 371/432 (85%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||| ||||||||| |||| |||||||| | ||||||||||||| |||||||| |
Sbjct: 531140 cctacccgttcatcagctacgtcaacgaccccgtcaacgtgcagctcggctacgcgctgt 531081
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 531080 tcggcgcgggcgcgccggcggtgagcgacggcgcgctcgtctacaccaacatgttcgacg 531021
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
| ||||| |||||||||| ||||||||| || | |||||||||||||| |||| | |||
Sbjct: 531020 cgacggtggacgcgctggcggccgcgctcgacagggaggggttcggcgccgtgccgatcg 530961
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
||||||| |||||||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 530960 cggtgacggagaccgggtggccgacggcggggcacccggcggcgacaccgcagaacgccg 530901
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| || |||||||||||||| |||||| || ||||||||||| |||||||||| |||||
Sbjct: 530900 ccgcctacaacgccaagatcgtggagcgggtggcgcgcggcgccggcacgccgcggcggc 530841
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 530840 caggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcg 530781
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||| | ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 530780 ccgagttcgagaggcacttcggcatcttcagggcggacgggagcaaggcttataacatca 530721
Query: 426 actttgcctaga 437
||||||| ||||
Sbjct: 530720 actttgcttaga 530709
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 373 bits (188), Expect = e-101
Identities = 371/432 (85%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||| ||||||||| |||| |||||||| | ||||||||||||| |||||||| |
Sbjct: 10119275 cctacccgttcatcagctacgtcaacgaccccgtcaacgtgcagctcggctacgcgctgt 10119216
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 10119215 tcggcgcgggcgcgccggcggtgagcgacggcgcgctcgtctacaccaacatgttcgacg 10119156
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
| ||||| |||||||||| ||||||||| || | |||||||||||||| |||| | |||
Sbjct: 10119155 cgacggtggacgcgctggcggccgcgctcgacagggaggggttcggcgccgtgccgatcg 10119096
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
||||||| |||||||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 10119095 cggtgacggagaccgggtggccgacggcggggcacccggcggcgacaccgcagaacgccg 10119036
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| || |||||||||||||| |||||| || ||||||||||| |||||||||| |||||
Sbjct: 10119035 ccgcctacaacgccaagatcgtggagcgggtggcgcgcggcgccggcacgccgcggcggc 10118976
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10118975 caggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcg 10118916
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||| | ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 10118915 ccgagttcgagaggcacttcggcatcttcagggcggacgggagcaaggcttataacatca 10118856
Query: 426 actttgcctaga 437
||||||| ||||
Sbjct: 10118855 actttgcttaga 10118844
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 373 bits (188), Expect = e-101
Identities = 371/432 (85%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||| ||||||||| |||| |||||||| | ||||||||||||| |||||||| |
Sbjct: 19593086 cctacccgttcatcagctacgtcaacgaccccgtcaacgtgcagctcggctacgcgctgt 19593027
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 19593026 tcggcgcgggcgcgccggcggtgagcgacggcgcgctcgtctacaccaacatgttcgacg 19592967
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
| ||||| |||||||||| ||||||||| || | |||||||||||||| |||| | |||
Sbjct: 19592966 cgacggtggacgcgctggcggccgcgctcgacagggaggggttcggcgccgtgccgatcg 19592907
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
||||||| |||||||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 19592906 cggtgacggagaccgggtggccgacggcggggcacccggcggcgacaccgcagaacgccg 19592847
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| || |||||||||||||| |||||| || ||||||||||| |||||||||| |||||
Sbjct: 19592846 ccgcctacaacgccaagatcgtggagcgggtggcgcgcggcgccggcacgccgcggcggc 19592787
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 19592786 caggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcg 19592727
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||| | ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 19592726 ccgagttcgagaggcacttcggcatcttcagggcggacgggagcaaggcttataacatca 19592667
Query: 426 actttgcctaga 437
||||||| ||||
Sbjct: 19592666 actttgcttaga 19592655
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 373 bits (188), Expect = e-101
Identities = 371/432 (85%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||| ||||||||| |||| |||||||| | ||||||||||||| |||||||| |
Sbjct: 20637640 cctacccgttcatcagctacgtcaacgaccccgtcaacgtgcagctcggctacgcgctgt 20637581
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 20637580 tcggcgcgggcgcgccggcggtgagcgacggcgcgctcgtctacaccaacatgttcgacg 20637521
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
| ||||| |||||||||| ||||||||| || | |||||||||||||| |||| | |||
Sbjct: 20637520 cgacggtggacgcgctggcggccgcgctcgacagggaggggttcggcgccgtgccgatcg 20637461
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
||||||| |||||||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 20637460 cggtgacggagaccgggtggccgacggcggggcacccggcggcgacaccgcagaacgccg 20637401
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| || |||||||||||||| |||||| || ||||||||||| |||||||||| |||||
Sbjct: 20637400 ccgcctacaacgccaagatcgtggagcgggtggcgcgcggcgccggcacgccgcggcggc 20637341
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 20637340 caggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcg 20637281
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||| | ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct: 20637280 ccgagttcgagaggcacttcggcatcttcagggcggacgggagcaaggcttataacatca 20637221
Query: 426 actttgcctaga 437
||||||| ||||
Sbjct: 20637220 actttgcttaga 20637209
>gb|AU077603.1|AU077603 AU077603 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20107_6A, mRNA sequence
Length = 403
Score = 258 bits (130), Expect = 3e-066
Identities = 253/293 (86%), Gaps = 1/293 (0%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttcggcggcgtgttgttcgcggtgaccgagaccgggtg 204
||||||||| || | |||||||||||||| |||| | |||||||||| |||||||||||
Sbjct: 1 ggccgcgctcgacagggaggggttcggcgccgtgccgatcgcggtgacggagaccgggtg 60
Query: 205 gccaaccgcggggcacccggccgccaccccgcagaacgccacagcgtacaacgccaagat 264
||| || |||||||| ||||| || || |||||||||||| | || ||||||||||||||
Sbjct: 61 gccgacggcggggcanccggcggcgacaccgcagaacgccgccgcctacaacgccaagat 120
Query: 265 tgtggagaggccggcgcgcggcgtcggcacgccgaagcggccaaaagaaaccgtggaggt 324
|||||| || ||||||||||| |||||||||| ||||||| | ||||||||||
Sbjct: 121 cgtggagcgggtggcgcgcggcg-cggcacgccgcggcggccaggcgtgcccgtggaggt 179
Query: 325 gttcctgttcgacttgtacgacgaggacggcaagcccggccccgagttcgagcgccactt 384
||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct: 180 gttcctgttcgacctgtacgacgaggacggcaagcccggcgccgagttcgagaggcactt 239
Query: 385 tggcatcttcagggcggacggcagtaaggcgtatgacatcaactttgcctaga 437
|||||||||||||||||||| || ||||| ||| ||||||||||||| ||||
Sbjct: 240 cggcatcttcagggcggacgggagcaaggcttataacatcaactttgcttaga 292
>gb|CB641093.1|CB641093 OSJNEa17M24.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa17M24 5', mRNA sequence
Length = 585
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 314 cgccaccccgcagaacgccgccgcgtacaacg 345
>gb|CB641107.1|CB641107 OSJNEa17N23.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa17N23 5', mRNA sequence
Length = 357
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 314 cgccaccccgcagaacgccgccgcgtacaacg 345
>dbj|AK067284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100P21, full
insert sequence
Length = 2768
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 909 cgccaccccgcagaacgccgccgcgtacaacg 940
>dbj|AK072943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148N05, full
insert sequence
Length = 2634
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 965 cgccaccccgcagaacgccgccgcgtacaacg 996
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
complete sequence
Length = 160142
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 149602 cgccaccccgcagaacgccgccgcgtacaacg 149571
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14,
complete sequence
Length = 185623
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 110375 cgccaccccgcagaacgccgccgcgtacaacg 110344
>gb|AACV01012288.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012288, whole
genome shotgun sequence
Length = 29864
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 11859 cgccaccccgcagaacgccgccgcgtacaacg 11828
>ref|XM_475333.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 858
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 447 cgccaccccgcagaacgccgccgcgtacaacg 478
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 110375 cgccaccccgcagaacgccgccgcgtacaacg 110344
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 3884687 cgccaccccgcagaacgccgccgcgtacaacg 3884656
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 21185000 cgccaccccgcagaacgccgccgcgtacaacg 21184969
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 226 cgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||||| | ||||||||||
Sbjct: 21556519 cgccaccccgcagaacgccgccgcgtacaacg 21556488
>gb|AACV01003026.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003026, whole
genome shotgun sequence
Length = 17433
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 15656 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 15602
>gb|AACV01026730.1| Oryza sativa (japonica cultivar-group) Ctg026730, whole genome
shotgun sequence
Length = 10818
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 135 acgcgctggtggccgcgctggag 157
|||||||||||||||||||||||
Sbjct: 965 acgcgctggtggccgcgctggag 987
>gb|AACV01026794.1| Oryza sativa (japonica cultivar-group) Ctg026794, whole genome
shotgun sequence
Length = 5539
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 135 acgcgctggtggccgcgctggag 157
|||||||||||||||||||||||
Sbjct: 2806 acgcgctggtggccgcgctggag 2828
>gb|AACV01028649.1| Oryza sativa (japonica cultivar-group) Ctg028649, whole genome
shotgun sequence
Length = 5345
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 135 acgcgctggtggccgcgctggag 157
|||||||||||||||||||||||
Sbjct: 4877 acgcgctggtggccgcgctggag 4899
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 41439077 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 41439131
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 36714195 ggccgcgctggagaaggacgggttc 36714219
>ref|NM_189714.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1005
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 688 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 742
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 1067371 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 1067425
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0432C03
Length = 164394
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 49900 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 49954
>gb|CH401604.1| Oryza sativa (japonica cultivar-group) scaffold000735 genomic
scaffold, whole genome shotgun sequence
Length = 10355
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 135 acgcgctggtggccgcgctggag 157
|||||||||||||||||||||||
Sbjct: 7622 acgcgctggtggccgcgctggag 7644
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 15793373 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 15793427
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 10887040 ggccgcgctggagaaggacgggttc 10887064
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 40995094 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 40995148
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 36088761 ggccgcgctggagaaggacgggttc 36088785
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 46.1 bits (23), Expect = 0.021
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct: 41358407 tacaccaacctgttcgacgccatggtcgacgccgtgtacgccgcgctggagaagg 41358461
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 36633525 ggccgcgctggagaaggacgggttc 36633549
>gb|C19561.1|C19561 C19561 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10609_1A, mRNA sequence
Length = 418
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 234 ggccgcgctggagaaggacgggttc 258
>gb|C99291.1|C99291 C99291 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10609_6Z, mRNA sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 233 ggccgcgctggagaaggacgggttc 257
>gb|AU070976.1|AU070976 AU070976 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10557_1A, mRNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 147 ggccgcgctggagaaggacgggttc 171
>gb|AU092815.1|AU092815 AU092815 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53777, mRNA sequence
Length = 436
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 136 ggccgcgctggagaaggacgggttc 160
>gb|CF292499.1|CF292499 30DGS--01-F14.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-F14, mRNA sequence
Length = 373
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 303 ggccgcgctggagaaggacgggttc 279
>gb|CF293844.1|CF293844 30DGS--03-C17.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C17, mRNA sequence
Length = 333
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 262 ggccgcgctggagaaggacgggttc 238
>gb|CF294525.1|CF294525 30DGS--04-B14.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--04-B14, mRNA sequence
Length = 410
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 299 ggccgcgctggagaaggacgggttc 275
>gb|CF335835.1|CF335835 JMT--05-K18.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--05-K18, mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 306 ggccgcgctggagaaggacgggttc 282
>dbj|AK063822.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A04, full
insert sequence
Length = 923
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 637 ggccgcgctggagaaggacgggttc 661
>dbj|AK102887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112K22, full
insert sequence
Length = 928
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 642 ggccgcgctggagaaggacgggttc 666
>gb|AACV01002688.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002688, whole
genome shotgun sequence
Length = 55981
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 29403 ggccgcgctggagaaggacgggttc 29379
>ref|NM_190624.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 651
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 534 ggccgcgctggagaaggacgggttc 558
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 11161578 ggccgcgctggagaaggacgggttc 11161602
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0529H11
Length = 165969
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ggccgcgctggagaaggaggggttc 169
|||||||||||||||||| ||||||
Sbjct: 106791 ggccgcgctggagaaggacgggttc 106815
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 883,758
Number of Sequences: 438736
Number of extensions: 883758
Number of successful extensions: 22464
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 21776
Number of HSP's gapped (non-prelim): 689
length of query: 577
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 556
effective length of database: 2,791,206,460
effective search space: 1551910791760
effective search space used: 1551910791760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)