BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU067990.1|AU067990 AU067990 Rice callus Oryza sativa (j... 94 2e-016
gb|AU068818.1|AU068818 AU068818 Rice callus Oryza sativa (j... 94 2e-016
gb|CB661065.1|CB661065 OSJNEd03H13.f OSJNEd Oryza sativa (j... 94 2e-016
gb|CB682737.1|CB682737 OSJNEf10F22.f OSJNEf Oryza sativa (j... 94 2e-016
gb|CF276162.1|CF276162 14ETL--01-D09.b1 Rice etiolated leaf... 94 2e-016
gb|CF321436.1|CF321436 HD--12-L02.b1 OsHDAC1-overexpressing... 94 2e-016
gb|BP184464.1|BP184464 BP184464 pNS rice panicle cDNA, flow... 94 2e-016
dbj|AK063535.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
dbj|AK072845.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
gb|D23163.1|D23163 RICC2330A Rice callus Oryza sativa (japo... 92 9e-016
gb|D23190.1|D23190 RICC2402A Rice callus Oryza sativa (japo... 92 9e-016
gb|AU068817.1|AU068817 AU068817 Rice callus Oryza sativa (j... 92 9e-016
gb|AU082385.1|AU082385 AU082385 Rice panicle at flowering s... 92 9e-016
gb|CB661066.1|CB661066 OSJNEd03H13.r OSJNEd Oryza sativa (j... 92 9e-016
gb|CB682738.1|CB682738 OSJNEf10F22.r OSJNEf Oryza sativa (j... 92 9e-016
gb|CF276163.1|CF276163 14ETL--01-D09.g1 Rice etiolated leaf... 92 9e-016
gb|CF304421.1|CF304421 ABF1--04-O21.g1 ABF3-overexpressing ... 92 9e-016
gb|CF317646.1|CF317646 HD--07-G17.g1 OsHDAC1-overexpressing... 92 9e-016
gb|CF321159.1|CF321159 HD--12-F02.b1 OsHDAC1-overexpressing... 92 9e-016
gb|CF321747.1|CF321747 HD--13-B18.g1 OsHDAC1-overexpressing... 92 9e-016
gb|CF327532.1|CF327532 NACL--02-A23.g1 Rice callus plasmid ... 92 9e-016
ref|XM_476044.1| Oryza sativa (japonica cultivar-group), p... 92 9e-016
gb|CF321746.1|CF321746 HD--13-B18.b1 OsHDAC1-overexpressing... 86 6e-014
gb|CA999490.1|CA999490 S345O_B06 Rice cold stress germinati... 84 2e-013
gb|CF332207.1|CF332207 NACL--08-J24.g1 Rice callus plasmid ... 84 2e-013
gb|CF337103.1|CF337103 JMT--07-G17.b1 AtJMT-overexpressing ... 82 9e-013
gb|CF332206.1|CF332206 NACL--08-J24.b1 Rice callus plasmid ... 78 1e-011
gb|C72062.1|C72062 C72062 Rice panicle at flowering stage O... 76 5e-011
gb|AU056304.1|AU056304 AU056304 Oryza sativa mature leaf Ni... 76 5e-011
gb|AU108654.1|AU108654 AU108654 Rice callus Oryza sativa (j... 74 2e-010
gb|CF321437.1|CF321437 HD--12-L02.g1 OsHDAC1-overexpressing... 74 2e-010
gb|CF331818.1|CF331818 NACL--08-B11.b1 Rice callus plasmid ... 74 2e-010
gb|CV721279.1|CV721279 YBH--03-I12.b1 Rice before heading y... 74 2e-010
gb|AU082425.1|AU082425 AU082425 Rice mature leaf Oryza sati... 70 3e-009
gb|CF331819.1|CF331819 NACL--08-B11.g1 Rice callus plasmid ... 70 3e-009
gb|D15380.1|D15380 RICC0557A Rice callus Oryza sativa (japo... 68 1e-008
gb|AU173215.1|AU173215 AU173215 Rice root Oryza sativa (jap... 66 5e-008
gb|D39074.2|D39074 RICR1743A Rice root Oryza sativa (japoni... 66 5e-008
gb|D22916.1|D22916 RICC1776A Rice callus Oryza sativa (japo... 64 2e-007
gb|CA755262.1|CA755262 BR030016000_PLATE_F05_38_045.ab1 OA ... 64 2e-007
gb|AC137000.2| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 56 5e-005
gb|AC144455.5| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
gb|AACV01012832.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AC124213.1| Genomic sequence for Oryza sativa, Nipponbar... 46 0.048
gb|AACV01026202.1| Oryza sativa (japonica cultivar-group) C... 46 0.048
ref|NM_196215.1| Oryza sativa (japonica cultivar-group) put... 46 0.048
ref|NT_080066.1| Oryza sativa (japonica cultivar-group) chr... 46 0.048
gb|CH401442.1| Oryza sativa (japonica cultivar-group) scaff... 46 0.048
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.048
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.048
emb|AL607103.3|OSJN01011 Oryza sativa (japonica cultivar-gr... 44 0.19
emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC O... 44 0.19
dbj|AP005541.3| Oryza sativa (japonica cultivar-group) geno... 44 0.19
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 44 0.19
dbj|AP005071.3| Oryza sativa (japonica cultivar-group) geno... 44 0.19
ref|NT_107160.1| Oryza sativa (japonica cultivar-group) 44 0.19
gb|AACV01001303.1| Oryza sativa (japonica cultivar-group) c... 44 0.19
gb|AACV01003428.1| Oryza sativa (japonica cultivar-group) c... 44 0.19
gb|AACV01017895.1| Oryza sativa (japonica cultivar-group) c... 44 0.19
gb|AACV01017896.1| Oryza sativa (japonica cultivar-group) c... 44 0.19
gb|AACV01024231.1| Oryza sativa (japonica cultivar-group) c... 44 0.19
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.19
ref|XM_481277.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.19
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 44 0.19
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 44 0.19
dbj|AP003435.2| Oryza sativa (japonica cultivar-group) geno... 44 0.19
dbj|AP003077.3| Oryza sativa (japonica cultivar-group) geno... 44 0.19
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.19
gb|CH401273.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.19
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.19
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.19
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 44 0.19
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
>gb|AU067990.1|AU067990 AU067990 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11428_7A, mRNA sequence
Length = 397
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 395 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 336
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 335 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 276
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 275 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 216
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 215 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 156
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 155 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 99
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 98 acttcaagaccccagaactccatcg 74
>gb|AU068818.1|AU068818 AU068818 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50668_9A, mRNA sequence
Length = 390
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 373 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 314
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 313 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 254
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 253 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 194
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 193 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 134
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 133 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 77
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 76 acttcaagaccccagaactccatcg 52
>gb|CB661065.1|CB661065 OSJNEd03H13.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03H13 5', mRNA sequence
Length = 823
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 393 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 334
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 333 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 274
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 273 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 214
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 213 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 154
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 153 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 97
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 96 acttcaagaccccagaactccatcg 72
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 816 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 760
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 759 gacggtgtagcaatctttgctttcttatcaga 728
>gb|CB682737.1|CB682737 OSJNEf10F22.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10F22 5', mRNA sequence
Length = 722
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 400 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 341
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 340 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 281
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 280 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 221
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 220 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 161
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 160 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 104
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 103 acttcaagaccccagaactccatcg 79
>gb|CF276162.1|CF276162 14ETL--01-D09.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-D09, mRNA sequence
Length = 594
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 415 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 356
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 355 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 296
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 295 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 236
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 235 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 176
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 175 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 119
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 118 acttcaagaccccagaactccatcg 94
>gb|CF321436.1|CF321436 HD--12-L02.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--12-L02, mRNA sequence
Length = 588
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 411 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 352
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 351 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 292
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 291 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 232
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 231 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 172
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 171 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 115
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 114 acttcaagaccccagaactccatcg 90
>gb|BP184464.1|BP184464 BP184464 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 12YPR018, mRNA
sequence
Length = 586
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 370 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 311
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 310 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 251
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 250 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 191
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 190 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 131
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 130 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 74
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 73 acttcaagaccccagaactccatcg 49
>dbj|AK063535.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B10, full
insert sequence
Length = 1161
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 405 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 346
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 345 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 286
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 285 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 226
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 225 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 166
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 165 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 109
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 108 acttcaagaccccagaactccatcg 84
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 828 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 772
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 771 gacggtgtagcaatctttgctttcttatcaga 740
>dbj|AK072845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142J09, full
insert sequence
Length = 1284
Score = 93.7 bits (47), Expect = 2e-016
Identities = 257/325 (79%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 404 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 345
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 344 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 285
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 284 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 225
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 224 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 165
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 164 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 108
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 107 acttcaagaccccagaactccatcg 83
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 965 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 906
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 905 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 850
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 827 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 771
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 770 gacggtgtagcaatctttgctttcttatcaga 739
>gb|D23163.1|D23163 RICC2330A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2330_1A, mRNA sequence
Length = 444
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 304 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 245
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 244 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 189
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 166 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 110
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 109 gacggtgtagcaatctttgctttcttatcaga 78
>gb|D23190.1|D23190 RICC2402A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2402_1A, mRNA sequence
Length = 330
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 304 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 245
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 244 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 189
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 166 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 110
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 109 gacggtgtagcaatctttgctttcttatcaga 78
>gb|AU068817.1|AU068817 AU068817 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50668_10Z, mRNA sequence
Length = 303
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 137 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 78
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 77 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 22
>gb|AU082385.1|AU082385 AU082385 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0894, mRNA sequence
Length = 714
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 466 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 407
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 406 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 351
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 328 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 272
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 271 gacggtgtagcaatctttgctttcttatcaga 240
>gb|CB661066.1|CB661066 OSJNEd03H13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03H13 3', mRNA sequence
Length = 844
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 284 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 343
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 344 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 399
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 422 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 478
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 479 gacggtgtagcaatctttgctttcttatcaga 510
>gb|CB682738.1|CB682738 OSJNEf10F22.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10F22 3', mRNA sequence
Length = 860
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 284 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 343
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 344 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 399
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 422 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 478
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 479 gacggtgtagcaatctttgctttcttatcaga 510
>gb|CF276163.1|CF276163 14ETL--01-D09.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-D09, mRNA sequence
Length = 534
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 201 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 260
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 261 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 316
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 339 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 395
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 396 gacggtgtagcaatctttgctttcttatcaga 427
>gb|CF304421.1|CF304421 ABF1--04-O21.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-O21, mRNA sequence
Length = 593
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 428 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 369
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 368 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 313
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 290 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 234
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 233 gacggtgtagcaatctttgctttcttatcaga 202
>gb|CF317646.1|CF317646 HD--07-G17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-G17, mRNA sequence
Length = 663
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 235 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 294
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 295 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 350
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 373 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 429
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 430 gacggtgtagcaatctttgctttcttatcaga 461
>gb|CF321159.1|CF321159 HD--12-F02.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--12-F02, mRNA sequence
Length = 658
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 567 tgcttggccttcgagtgagattgcagagccatttcactgttgaaagtcttgctgcatgac 508
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 507 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 452
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 429 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 373
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 372 gacggtgtagcaatctttgctttcttatcaga 341
>gb|CF321747.1|CF321747 HD--13-B18.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--13-B18, mRNA sequence
Length = 698
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 249 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 308
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 309 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 364
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 387 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 443
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 444 gacggtgtagcaatctttgctttcttatcaga 475
>gb|CF327532.1|CF327532 NACL--02-A23.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--02-A23, mRNA sequence
Length = 475
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 254 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 313
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 314 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 369
Score = 65.9 bits (33), Expect = 5e-008
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 392 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 448
Query: 477 ggcggtgtggcaacctttgctttctta 503
| |||||| |||| |||||||||||||
Sbjct: 449 gacggtgtagcaatctttgctttctta 475
>ref|XM_476044.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 894
Score = 91.7 bits (46), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 881 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 822
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 821 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 766
Score = 81.8 bits (41), Expect = 9e-013
Identities = 254/323 (78%), Gaps = 9/323 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||| ||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 320 tcagaatcaaaatccaattcatcttcctcagccggctgggaaactttgtagccagaaaag 261
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 260 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 201
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 200 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 141
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 140 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 81
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 80 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 24
Query: 1161 acctcgagaccccagaactccat 1183
|| || |||||||||||||||||
Sbjct: 23 acttcaagaccccagaactccat 1
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 743 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 687
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 686 gacggtgtagcaatctttgctttcttatcaga 655
>gb|CF321746.1|CF321746 HD--13-B18.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--13-B18, mRNA sequence
Length = 663
Score = 85.7 bits (43), Expect = 6e-014
Identities = 256/325 (78%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 415 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 356
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 355 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 296
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | |||||
Sbjct: 295 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatcg 236
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 235 gttttaacatacattactgcattgtcagatcctttctttgattccccaagagcagcctga 176
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 175 gaaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 119
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 118 acttcaagaccccagaactccatcg 94
>gb|CA999490.1|CA999490 S345O_B06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 230
Score = 83.8 bits (42), Expect = 2e-013
Identities = 89/104 (85%), Gaps = 3/104 (2%)
Strand = Plus / Minus
Query: 297 gagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaagggact 356
||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||| | |
Sbjct: 230 gagtgagattgcagagccatttcactgttgaacgtcttgctgcatgacttgcaagaaatt 171
Query: 357 gacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 170 gacccaccaccggattttggggacttctcctttgacttgtcatt 127
Score = 75.8 bits (38), Expect = 5e-011
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 104 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 48
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||||||||||||||||||
Sbjct: 47 gacggtgtagcaatctttgctttcttatcaga 16
>gb|CF332207.1|CF332207 NACL--08-J24.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-J24, mRNA sequence
Length = 477
Score = 83.8 bits (42), Expect = 2e-013
Identities = 98/116 (84%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| |||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 256 tgcttggccttcgagtgaaattgcagagccatttcactgttgaacgtcttgctgcatgac 315
Query: 345 ttgcaagggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct: 316 ttgcaagaaattgacccaccaccggattttggggacttctcctttgacttgtcatt 371
Score = 65.9 bits (33), Expect = 5e-008
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 394 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 450
Query: 477 ggcggtgtggcaacctttgctttctta 503
| |||||| |||| |||||||||||||
Sbjct: 451 gacggtgtagcaatctttgctttctta 477
>gb|CF337103.1|CF337103 JMT--07-G17.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group) cDNA
clone JMT--07-G17, mRNA sequence
Length = 573
Score = 81.8 bits (41), Expect = 9e-013
Identities = 255/325 (78%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 414 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 355
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 354 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 295
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 294 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 235
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | ||||||||||||| |||| ||||||||
Sbjct: 234 gttttaacatacattactgcattgtcagatcctttctttgattccncaagagcagcctga 175
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| |||| | | ||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 174 gaaaggtgc---aaanagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 118
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 117 acttcaagaccccagaactccatcg 93
>gb|CF332206.1|CF332206 NACL--08-J24.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--08-J24, mRNA
sequence
Length = 480
Score = 77.8 bits (39), Expect = 1e-011
Identities = 255/325 (78%), Gaps = 9/325 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 415 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 356
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || | ||||||||||||||||||||| | || ||||||||
Sbjct: 355 aacacactagcagtctttgaagcgtgtgacagctcaaactctttgtcaaagaccaaatca 296
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 295 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 236
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
|| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 235 gtcttaacatacattactgcattgtcagaccctttctttgattccccaagagcagcctga 176
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
|||| ||||| ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 175 gaaaggtgcaa---aaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 119
Query: 1161 acctcgagaccccagaactccatcg 1185
|| || |||||||||||||||||||
Sbjct: 118 acttcaagaccccagaactccatcg 94
>gb|C72062.1|C72062 C72062 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0894_1A, mRNA sequence
Length = 458
Score = 75.8 bits (38), Expect = 5e-011
Identities = 253/323 (78%), Gaps = 9/323 (2%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
||||||| || ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 394 tcagaattaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 335
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 334 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 275
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 274 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 215
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctgg 1103
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 214 gttttaacatacattactgcattgtcagancctttctttgattccccaagagcagcctga 155
Query: 1104 gaaacgtgcaggataaagc---catgtccaggctcacacttgacagtggatccaggtttg 1160
||| |||| | ||||| ||| | |||||||||| |||||||| |||||| |||
Sbjct: 154 naaaggtgc---aaaaagcgttcatcttcaggctcacatttgacagtctgtccaggcttg 98
Query: 1161 acctcgagaccccagaactccat 1183
|| || |||||||||||||||||
Sbjct: 97 acttcaagaccccagaactccat 75
>gb|AU056304.1|AU056304 AU056304 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20458_2Z, mRNA sequence
Length = 623
Score = 75.8 bits (38), Expect = 5e-011
Identities = 87/103 (84%), Gaps = 4/103 (3%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 373 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 314
Query: 345 ttgcaagggactgacccacca----gattttggagacttctcc 383
||||||| | |||||||||| |||||||| |||||||||
Sbjct: 313 ttgcaagaaattgacccaccaccgggattttggggacttctcc 271
Score = 69.9 bits (35), Expect = 3e-009
Identities = 78/92 (84%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 417 tttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggct 476
||||| || ||||||||||| |||||| ||||||||||| ||||||| |||||| ||
Sbjct: 233 tttgccggatgtggagttgctacatgga---cacccttcttgtcacctgtcttctggcct 177
Query: 477 ggcggtgtggcaacctttgctttcttatcaga 508
| |||||| |||| ||| ||||||||||||||
Sbjct: 176 gacggtgtagcaatcttngctttcttatcaga 145
>gb|AU108654.1|AU108654 AU108654 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30037, mRNA sequence
Length = 333
Score = 73.8 bits (37), Expect = 2e-010
Identities = 189/239 (79%), Gaps = 3/239 (1%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 256 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 197
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| ||||| | ||| || || ||||||||||||||||||||||| | || ||||||||
Sbjct: 196 aacacactagcagtctttgaagtgtgtgacagctcaaactctttgtcaaagaccaaatca 137
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
|| || || || ||| | ||||| ||||| ||||||||| | ||||| | ||||||
Sbjct: 136 aactggatttgagggaacttgtcagctgagagggttccaatgactagcttttgatcatca 77
Query: 1047 actttgacatacattaaggcactgtca---cttttctttgattccccaagggcagcctg 1102
||| |||||||||| ||| ||||| | |||||||||||||||||| ||||||||
Sbjct: 76 gttttaacatacattactgcattgtcagancctttctttgattccccaagagcagcctg 18
>gb|CF321437.1|CF321437 HD--12-L02.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--12-L02, mRNA sequence
Length = 434
Score = 73.8 bits (37), Expect = 2e-010
Identities = 81/95 (85%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 306 tgcagagccatctcactattgaatgtcttgctgcatgatttgcaagggactgacccacca 365
|||| |||||| ||||| ||||| |||||||||||||| ||||||| | ||||||||||
Sbjct: 284 tgcaaagccatttcactgttgaacgtcttgctgcatgacttgcaagaaattgacccacca 343
Query: 366 ---gattttggagacttctccgttgatttgtcatt 397
|||||||| ||||||||| |||| ||||||||
Sbjct: 344 ccggattttggggacttctcctttgacttgtcatt 378
>gb|CF331818.1|CF331818 NACL--08-B11.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-B11, mRNA sequence
Length = 407
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 326 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 385
Query: 345 ttgcaagggactgacccacca 365
||||||| | ||||||||||
Sbjct: 386 ttgcaagaaattgacccacca 406
>gb|CV721279.1|CV721279 YBH--03-I12.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-I12, mRNA sequence
Length = 456
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 108 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 49
Query: 345 ttgcaagggactgacccacca 365
||||||| | ||||||||||
Sbjct: 48 ttgcaagaaattgacccacca 28
>gb|AU082425.1|AU082425 AU082425 Rice mature leaf Oryza sativa (japonica cultivar-group) cDNA
clone S20458, mRNA sequence
Length = 787
Score = 69.9 bits (35), Expect = 3e-009
Identities = 191/241 (79%), Gaps = 9/241 (3%)
Strand = Plus / Minus
Query: 951 tgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttgtcg 1010
|||||||||||||||||||| | || |||||||| || || || || ||| | |||||
Sbjct: 310 tgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttgtca 251
Query: 1011 atagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggcactg 1070
||||| ||||||||| | ||||| | |||||| ||| |||||||||| ||| ||
Sbjct: 250 gctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgcattg 191
Query: 1071 tca---cttttctttgattccccaagggcagcctgggaaacgtgcaggataaagc---ca 1124
||| | |||||||||||||||||| |||||||| |||| ||||| ||||| ||
Sbjct: 190 tcagatcctttctttgattccccaagagcagcctgagaaaggtgcaa---aaagcgttca 134
Query: 1125 tgtccaggctcacacttgacagtggatccaggtttgacctcgagaccccagaactccatc 1184
| | |||||||||| |||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 133 tcttcaggctcacatttgacagtctgtccaggcttgacttcaagaccccagaactccatc 74
Query: 1185 g 1185
|
Sbjct: 73 g 73
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 462 cctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
||||| |||||| ||| |||||| |||| ||||||||||||||||||
Sbjct: 777 cctgtcttctggcctgacggtgtagcaatctttgctttcttatcaga 731
>gb|CF331819.1|CF331819 NACL--08-B11.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-B11, mRNA sequence
Length = 396
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 71 tgcttggccttcgagtgagattgcagagccatttcactgttgaacgtcttgctgcatgac 12
Query: 345 ttgcaag 351
|||||||
Sbjct: 11 ttgcaag 5
>gb|D15380.1|D15380 RICC0557A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0557A, mRNA sequence
Length = 402
Score = 67.9 bits (34), Expect = 1e-008
Identities = 190/240 (79%), Gaps = 9/240 (3%)
Strand = Plus / Minus
Query: 952 gtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttgtcga 1011
||||||||||||||||||| | || |||||||| || || || || ||| | |||||
Sbjct: 308 gtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttgtcag 249
Query: 1012 tagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggcactgt 1071
||||| ||||||||| | ||||| | |||||| ||| |||||||||| ||| |||
Sbjct: 248 ctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgcattgt 189
Query: 1072 ca---cttttctttgattccccaagggcagcctgggaaacgtgcaggataaagc---cat 1125
|| | |||||||||||||||||| |||||||| |||| ||||| ||||| |||
Sbjct: 188 cagatcctttctttgattccccaagagcagcctgagaaaggtgcaa---aaagcgttcat 132
Query: 1126 gtccaggctcacacttgacagtggatccaggtttgacctcgagaccccagaactccatcg 1185
| |||||||||| |||||||| |||||| ||||| || |||||||||||||||||||
Sbjct: 131 cttcaggctcacatttgacagtctgtccaggcttgacttcaagaccccagaactccatcg 72
>gb|AU173215.1|AU173215 AU173215 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1743, mRNA sequence
Length = 454
Score = 65.9 bits (33), Expect = 5e-008
Identities = 97/117 (82%), Gaps = 4/117 (3%)
Strand = Plus / Minus
Query: 285 tgcttcgccttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgat 344
||||| ||||| ||| ||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 189 tgcttggccttcgagngagattgcagagccatttcactgttgaacgtcttgctgcatgac 130
Query: 345 ttgcaag-ggactgacccacca---gattttggagacttctccgttgatttgtcatt 397
||||||| | |||||||||| |||||||| ||||||||| |||| ||| ||||
Sbjct: 129 ttgcaagaaaattgacccaccaccggattttggggacttctcctttgacttgncatt 73
>gb|D39074.2|D39074 RICR1743A Rice root Oryza sativa (japonica cultivar-group) cDNA, mRNA
sequence
Length = 384
Score = 65.9 bits (33), Expect = 5e-008
Identities = 94/113 (83%), Gaps = 6/113 (5%)
Strand = Plus / Minus
Query: 1076 tttctttgattccccaagggcagcctgggaaacgtgcaggataaagc---catgtccagg 1132
|||||||||||||||||| |||||||| |||| ||||| ||||| ||| | ||||
Sbjct: 291 tttctttgattccccaagagcagcctgagaaaggtgcaa---aaagcgttcatcttcagg 235
Query: 1133 ctcacacttgacagtggatccaggtttgacctcgagaccccagaactccatcg 1185
|||||| |||||||| |||||| ||||| || |||||||||||||||||||
Sbjct: 234 ctcacatttgacagtctgtccaggcttgacttcaagaccccagaactccatcg 182
>gb|D22916.1|D22916 RICC1776A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1776_1A, mRNA sequence
Length = 357
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 215 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 156
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactcttt 970
|| ||||| | ||| || || |||||||||||||||||||||||
Sbjct: 155 aacacactagcagtctttgaagtgtgtgacagctcaaactcttt 112
>gb|CA755262.1|CA755262 BR030016000_PLATE_F05_38_045.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030016000_PLATE_F05_38_045.ab1 similar to (AF255711)
putative histone deacetylase HD2 [Oryza sativa], mRNA
sequence
Length = 630
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||| ||
Sbjct: 223 tcagaatcaaaatccatttcatcttcctcagccggctgggaaactttgtagccagaaaag 164
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactcttt 970
|| ||||| | ||| || || |||||||||||||||||||||||
Sbjct: 163 aacacactagcagtctttgaagtgtgtgacagctcaaactcttt 120
>gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0035I01, complete sequence
Length = 147813
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 461 acctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
|||||| |||||| ||| |||||| |||| ||||||||||||||||||
Sbjct: 18357 acctgtcttctggcctgacggtgtagcaatctttgctttcttatcaga 18404
Score = 54.0 bits (27), Expect = 2e-004
Identities = 125/157 (79%), Gaps = 3/157 (1%)
Strand = Plus / Plus
Query: 948 gtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttg 1007
||||||||||||||||||||||| | || |||||||| || || || || ||| | |||
Sbjct: 19322 gtgtgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttg 19381
Query: 1008 tcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggca 1067
|| ||||| ||||||||| | ||||| | |||||| ||| |||||||||| |||
Sbjct: 19382 tcagctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgca 19441
Query: 1068 ctgtca---cttttctttgattccccaagggcagcct 1101
||||| | |||||||||||||||||| |||||||
Sbjct: 19442 ttgtcagatcctttctttgattccccaagagcagcct 19478
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccacca---gattttggagacttctccgttga 388
|||||||||||| ||||||| | |||||||||| |||||||| ||||||||| ||||
Sbjct: 18139 cttgctgcatgacttgcaagaaattgacccaccaccggattttggggacttctcctttga 18198
Query: 389 tttgtcatt 397
||||||||
Sbjct: 18199 cttgtcatt 18207
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 461 acctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
|||||| |||||| ||| |||||| |||| ||||||||||||||||||
Sbjct: 1168783 acctgtcttctggcctgacggtgtagcaatctttgctttcttatcaga 1168830
Score = 54.0 bits (27), Expect = 2e-004
Identities = 125/157 (79%), Gaps = 3/157 (1%)
Strand = Plus / Plus
Query: 948 gtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttg 1007
||||||||||||||||||||||| | || |||||||| || || || || ||| | |||
Sbjct: 1169748 gtgtgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttg 1169807
Query: 1008 tcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggca 1067
|| ||||| ||||||||| | ||||| | |||||| ||| |||||||||| |||
Sbjct: 1169808 tcagctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgca 1169867
Query: 1068 ctgtca---cttttctttgattccccaagggcagcct 1101
||||| | |||||||||||||||||| |||||||
Sbjct: 1169868 ttgtcagatcctttctttgattccccaagagcagcct 1169904
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccacca---gattttggagacttctccgttga 388
|||||||||||| ||||||| | |||||||||| |||||||| ||||||||| ||||
Sbjct: 1168565 cttgctgcatgacttgcaagaaattgacccaccaccggattttggggacttctcctttga 1168624
Query: 389 tttgtcatt 397
||||||||
Sbjct: 1168625 cttgtcatt 1168633
>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17,
complete sequence
Length = 134631
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 461 acctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
|||||| |||||| ||| |||||| |||| ||||||||||||||||||
Sbjct: 118125 acctgtcttctggcctgacggtgtagcaatctttgctttcttatcaga 118172
Score = 54.0 bits (27), Expect = 2e-004
Identities = 125/157 (79%), Gaps = 3/157 (1%)
Strand = Plus / Plus
Query: 948 gtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttg 1007
||||||||||||||||||||||| | || |||||||| || || || || ||| | |||
Sbjct: 119090 gtgtgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttg 119149
Query: 1008 tcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggca 1067
|| ||||| ||||||||| | ||||| | |||||| ||| |||||||||| |||
Sbjct: 119150 tcagctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgca 119209
Query: 1068 ctgtca---cttttctttgattccccaagggcagcct 1101
||||| | |||||||||||||||||| |||||||
Sbjct: 119210 ttgtcagatcctttctttgattccccaagagcagcct 119246
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccacca---gattttggagacttctccgttga 388
|||||||||||| ||||||| | |||||||||| |||||||| ||||||||| ||||
Sbjct: 117907 cttgctgcatgacttgcaagaaattgacccaccaccggattttggggacttctcctttga 117966
Query: 389 tttgtcatt 397
||||||||
Sbjct: 117967 cttgtcatt 117975
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 461 acctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
|||||| |||||| ||| |||||| |||| ||||||||||||||||||
Sbjct: 29533855 acctgtcttctggcctgacggtgtagcaatctttgctttcttatcaga 29533902
Score = 54.0 bits (27), Expect = 2e-004
Identities = 125/157 (79%), Gaps = 3/157 (1%)
Strand = Plus / Plus
Query: 948 gtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttg 1007
||||||||||||||||||||||| | || |||||||| || || || || ||| | |||
Sbjct: 29534820 gtgtgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttg 29534879
Query: 1008 tcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggca 1067
|| ||||| ||||||||| | ||||| | |||||| ||| |||||||||| |||
Sbjct: 29534880 tcagctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgca 29534939
Query: 1068 ctgtca---cttttctttgattccccaagggcagcct 1101
||||| | |||||||||||||||||| |||||||
Sbjct: 29534940 ttgtcagatcctttctttgattccccaagagcagcct 29534976
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccacca---gattttggagacttctccgttga 388
|||||||||||| ||||||| | |||||||||| |||||||| ||||||||| ||||
Sbjct: 29533637 cttgctgcatgacttgcaagaaattgacccaccaccggattttggggacttctcctttga 29533696
Query: 389 tttgtcatt 397
||||||||
Sbjct: 29533697 cttgtcatt 29533705
>gb|AACV01012832.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012832, whole
genome shotgun sequence
Length = 19488
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 332 cttgctgcatgatttgcaagggactgacccacca---gattttggagacttctccgttga 388
|||||||||||| ||||||| | |||||||||| |||||||| ||||||||| ||||
Sbjct: 16396 cttgctgcatgacttgcaagaaattgacccaccaccggattttggggacttctcctttga 16337
Query: 389 tttgtcatt 397
||||||||
Sbjct: 16336 cttgtcatt 16328
Score = 54.0 bits (27), Expect = 2e-004
Identities = 125/157 (79%), Gaps = 3/157 (1%)
Strand = Plus / Minus
Query: 948 gtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttg 1007
||||||||||||||||||||||| | || |||||||| || || || || ||| | |||
Sbjct: 15213 gtgtgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttg 15154
Query: 1008 tcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggca 1067
|| ||||| ||||||||| | ||||| | |||||| ||| |||||||||| |||
Sbjct: 15153 tcagctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgca 15094
Query: 1068 ctgtca---cttttctttgattccccaagggcagcct 1101
||||| | |||||||||||||||||| |||||||
Sbjct: 15093 ttgtcagatcctttctttgattccccaagagcagcct 15057
Score = 48.1 bits (24), Expect = 0.012
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 461 acctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
|||||| |||||| ||| |||||| |||| ||| ||||||||||||||
Sbjct: 16178 acctgtcttctggcctgacggtgtagcaatcttggctttcttatcaga 16131
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 54.0 bits (27), Expect = 2e-004
Identities = 125/157 (79%), Gaps = 3/157 (1%)
Strand = Plus / Plus
Query: 948 gtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttg 1007
||||||||||||||||||||||| | || |||||||| || || || || ||| | |||
Sbjct: 11927703 gtgtgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttg 11927762
Query: 1008 tcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggca 1067
|| ||||| ||||||||| | ||||| | |||||| ||| |||||||||| |||
Sbjct: 11927763 tcagctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgca 11927822
Query: 1068 ctgtca---cttttctttgattccccaagggcagcct 1101
||||| | |||||||||||||||||| |||||||
Sbjct: 11927823 ttgtcagatcctttctttgattccccaagagcagcct 11927859
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccacca---gattttggagacttctccgttga 388
|||||||||||| ||||||| | |||||||||| |||||||| ||||||||| ||||
Sbjct: 11926520 cttgctgcatgacttgcaagaaattgacccaccaccggattttggggacttctcctttga 11926579
Query: 389 tttgtcatt 397
||||||||
Sbjct: 11926580 cttgtcatt 11926588
Score = 48.1 bits (24), Expect = 0.012
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 461 acctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
|||||| |||||| ||| |||||| |||| ||| ||||||||||||||
Sbjct: 11926738 acctgtcttctggcctgacggtgtagcaatcttggctttcttatcaga 11926785
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 54.0 bits (27), Expect = 2e-004
Identities = 125/157 (79%), Gaps = 3/157 (1%)
Strand = Plus / Plus
Query: 948 gtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtatttg 1007
||||||||||||||||||||||| | || |||||||| || || || || ||| | |||
Sbjct: 29228016 gtgtgtgacagctcaaactctttgtcaaagaccaaatcaaactggatttgagggaacttg 29228075
Query: 1008 tcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaaggca 1067
|| ||||| ||||||||| | ||||| | |||||| ||| |||||||||| |||
Sbjct: 29228076 tcagctgagagggttccaatgactagcttttgatcatcagttttaacatacattactgca 29228135
Query: 1068 ctgtca---cttttctttgattccccaagggcagcct 1101
||||| | |||||||||||||||||| |||||||
Sbjct: 29228136 ttgtcagatcctttctttgattccccaagagcagcct 29228172
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccacca---gattttggagacttctccgttga 388
|||||||||||| ||||||| | |||||||||| |||||||| ||||||||| ||||
Sbjct: 29226833 cttgctgcatgacttgcaagaaattgacccaccaccggattttggggacttctcctttga 29226892
Query: 389 tttgtcatt 397
||||||||
Sbjct: 29226893 cttgtcatt 29226901
Score = 48.1 bits (24), Expect = 0.012
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 461 acctgttttctgggctggcggtgtggcaacctttgctttcttatcaga 508
|||||| |||||| ||| |||||| |||| ||| ||||||||||||||
Sbjct: 29227051 acctgtcttctggcctgacggtgtagcaatcttggctttcttatcaga 29227098
>gb|AC124213.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0019N10, from chromosome 10, complete sequence
Length = 148704
Score = 46.1 bits (23), Expect = 0.048
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 817 ctttgccattttccttgattactggaa 843
|||||||||||| ||||||||||||||
Sbjct: 83333 ctttgccatttttcttgattactggaa 83307
>gb|AACV01026202.1| Oryza sativa (japonica cultivar-group) Ctg026202, whole genome
shotgun sequence
Length = 11712
Score = 46.1 bits (23), Expect = 0.048
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 817 ctttgccattttccttgattactggaa 843
|||||||||||| ||||||||||||||
Sbjct: 2539 ctttgccatttttcttgattactggaa 2565
>ref|NM_196215.1| Oryza sativa (japonica cultivar-group) putative retroelement
(OSJNAa0019N10.17), mRNA
Length = 2577
Score = 46.1 bits (23), Expect = 0.048
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 817 ctttgccattttccttgattactggaa 843
|||||||||||| ||||||||||||||
Sbjct: 1864 ctttgccatttttcttgattactggaa 1838
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,139,475
Number of Sequences: 438736
Number of extensions: 2139475
Number of successful extensions: 15155
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14300
Number of HSP's gapped (non-prelim): 821
length of query: 1297
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1276
effective length of database: 2,791,206,460
effective search space: 3561579442960
effective search space used: 3561579442960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)