BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696537.2.1
(592 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149637.11| Medicago truncatula clone mth2-181h2, compl... 42 0.052
gb|BF519003.1|BF519003 EST456400 DSIL Medicago truncatula c... 40 0.21
gb|BF632888.1|BF632888 NF047F05DT1F1047 Drought Medicago tr... 40 0.21
gb|BE320768.2|BE320768 NF028D09RT1F1074 Developing root Med... 40 0.21
gb|AJ504392.1|AJ504392 AJ504392 MTAMP Medicago truncatula c... 40 0.21
gb|CA918926.1|CA918926 EST636644 MTUS Medicago truncatula c... 40 0.21
gb|CF068132.1|CF068132 EST668853 MTUS Medicago truncatula c... 40 0.21
gb|DW015437.1|DW015437 EST1224398 MTY Medicago truncatula c... 40 0.21
gb|DW015870.1|DW015870 EST1224831 MTY Medicago truncatula c... 40 0.21
gb|DW016114.1|DW016114 EST1225075 MTY Medicago truncatula c... 40 0.21
>gb|AC149637.11| Medicago truncatula clone mth2-181h2, complete sequence
Length = 116616
Score = 42.1 bits (21), Expect = 0.052
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccagg 288
|||||||||||||| ||||||||||
Sbjct: 72576 gggtgttgtaagaggtgcatccagg 72600
>gb|BF519003.1|BF519003 EST456400 DSIL Medicago truncatula cDNA clone pDSIL-19A20, mRNA
sequence
Length = 598
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 416 gggtgttgtaagaggtgcatccag 439
>gb|BF632888.1|BF632888 NF047F05DT1F1047 Drought Medicago truncatula cDNA clone NF047F05DT
5', mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 439 gggtgttgtaagaggtgcatccag 462
>gb|BE320768.2|BE320768 NF028D09RT1F1074 Developing root Medicago truncatula cDNA clone
NF028D09RT 5', mRNA sequence
Length = 211
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 66 gggtgttgtaagaggtgcatccag 89
>gb|AJ504392.1|AJ504392 AJ504392 MTAMP Medicago truncatula cDNA clone mtgmadc120046h11,
mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 481 gggtgttgtaagaggtgcatccag 504
>gb|CA918926.1|CA918926 EST636644 MTUS Medicago truncatula cDNA clone MTUS-4C6, mRNA
sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 453 gggtgttgtaagaggtgcatccag 430
>gb|CF068132.1|CF068132 EST668853 MTUS Medicago truncatula cDNA clone MTUS-4C6, mRNA
sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 369 gggtgttgtaagaggtgcatccag 392
>gb|DW015437.1|DW015437 EST1224398 MTY Medicago truncatula cDNA clone MTYA515, mRNA
sequence
Length = 888
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 483 gggtgttgtaagaggtgcatccag 506
>gb|DW015870.1|DW015870 EST1224831 MTY Medicago truncatula cDNA clone MTYAA64, mRNA
sequence
Length = 852
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 472 gggtgttgtaagaggtgcatccag 495
>gb|DW016114.1|DW016114 EST1225075 MTY Medicago truncatula cDNA clone MTYAD33, mRNA
sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 264 gggtgttgtaagagctgcatccag 287
|||||||||||||| |||||||||
Sbjct: 488 gggtgttgtaagaggtgcatccag 511
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,386
Number of Sequences: 392609
Number of extensions: 99386
Number of successful extensions: 6200
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6188
Number of HSP's gapped (non-prelim): 12
length of query: 592
length of database: 441,732,993
effective HSP length: 19
effective length of query: 573
effective length of database: 434,273,422
effective search space: 248838670806
effective search space used: 248838670806
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)