BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3438088.2.1
(615 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR509377.1| mth4-20D1FM1 BAC end, cultivar Jemalong A17... 44 0.014
gb|CG925677.1|CG925677 MBEDJ30TRC mth2 Medicago truncatula ... 40 0.21
emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2... 40 0.21
>emb|CR509377.1| mth4-20D1FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 469
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 160 aatctaaatctaaataaataaa 181
||||||||||||||||||||||
Sbjct: 98 aatctaaatctaaataaataaa 77
>gb|CG925677.1|CG925677 MBEDJ30TRC mth2 Medicago truncatula genomic clone 32E12, DNA
sequence
Length = 364
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 251 cggcggcggcggaggcgaagggaa 274
||||||||||||||||| ||||||
Sbjct: 289 cggcggcggcggaggcggagggaa 312
>emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2-38i20, COMPLETE SEQUENCE
Length = 123473
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 accataccataccatacccc 223
||||||||||||||||||||
Sbjct: 33710 accataccataccatacccc 33729
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,118
Number of Sequences: 392609
Number of extensions: 162118
Number of successful extensions: 12399
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12390
Number of HSP's gapped (non-prelim): 8
length of query: 615
length of database: 441,732,993
effective HSP length: 19
effective length of query: 596
effective length of database: 434,273,422
effective search space: 258826959512
effective search space used: 258826959512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)