BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203838.2.1
(534 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 50 2e-004
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 50 2e-004
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 50 2e-004
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 50 2e-004
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 48 8e-004
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 48 8e-004
gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula c... 48 8e-004
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 48 8e-004
gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula c... 44 0.012
gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula c... 44 0.012
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 44 0.012
gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula c... 44 0.012
gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone m... 44 0.012
gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula c... 42 0.047
gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula c... 42 0.047
gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula c... 42 0.047
gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula c... 42 0.047
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 42 0.047
gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula c... 42 0.047
gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula c... 42 0.047
gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula c... 42 0.047
gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula c... 42 0.047
gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula c... 42 0.047
gb|CG963337.1|CG963337 MBEFI76TF mth2 Medicago truncatula g... 40 0.18
gb|AJ499351.1|AJ499351 AJ499351 MTGIM Medicago truncatula c... 40 0.18
gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula c... 40 0.18
gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula c... 40 0.18
gb|AC148359.37| Medicago truncatula clone mth2-22k11, compl... 40 0.18
gb|AC169666.2| Medicago truncatula chromosome 7 clone mth2-... 40 0.18
gb|AC150877.14| Medicago truncatula clone mth2-167e16, WORK... 40 0.18
gb|AC150877.15| Medicago truncatula clone mth2-167e16, WORK... 40 0.18
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 509 cgtacctgcccgggcggccgctcga 533
|||||||||||||||||||||||||
Sbjct: 203 cgtacctgcccgggcggccgctcga 227
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 45 gtacctgcccgggcggccgctcgaa 21
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 290 gtacctgcccgggcggccgctcgaa 314
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 297 gtacctgcccgggcggccgctcgaa 273
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcga 533
||||||||||||||||||||||||
Sbjct: 300 gtacctgcccgggcggccgctcga 323
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcga 533
||||||||||||||||||||||||
Sbjct: 339 gtacctgcccgggcggccgctcga 316
>gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula cDNA clone mtgmacc120001a07,
mRNA sequence
Length = 366
Score = 48.1 bits (24), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 508 gcgtacctgcccgggcggccgctcgaa 534
|||||||||||||||||| ||||||||
Sbjct: 340 gcgtacctgcccgggcggncgctcgaa 366
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcga 533
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula cDNA clone mtgmacc120012e05,
mRNA sequence
Length = 114
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 508 gcgtacctgcccgggcggccgctcga 533
||||||||||||||||| ||||||||
Sbjct: 26 gcgtacctgcccgggcgcccgctcga 1
>gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula cDNA clone mtgmacc120013f07,
mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 508 gcgtacctgcccgggcggccgctcga 533
|||||||||||||||| |||||||||
Sbjct: 26 gcgtacctgcccgggcagccgctcga 1
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
mRNA sequence
Length = 128
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 508 gcgtacctgcccgggcggccgctcga 533
||||||||||||||||||||| ||||
Sbjct: 26 gcgtacctgcccgggcggccgttcga 1
>gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula cDNA clone mtgmacc120007f12,
mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 0.012
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||| ||||||||
Sbjct: 350 gtacctgcccgggcggncgctcgaa 374
>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
Length = 154095
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 tattctaaatatacttgcttat 109
||||||||||||||||||||||
Sbjct: 123059 tattctaaatatacttgcttat 123080
>gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula cDNA clone mtgmacc120012g12,
mRNA sequence
Length = 398
Score = 42.1 bits (21), Expect = 0.047
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 508 gcgtacctgcccgggcggccg 528
|||||||||||||||||||||
Sbjct: 377 gcgtacctgcccgggcggccg 397
>gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula cDNA clone mtgmacc120014h01,
mRNA sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||| ||||||||||||
Sbjct: 33 gtacctgcccggccggccgctcgaa 9
>gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula cDNA clone mtgmacc120017d07,
mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||| ||||||||||||
Sbjct: 533 gtacctgcccggacggccgctcgaa 557
>gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula cDNA clone mtgmacc120017e07,
mRNA sequence
Length = 489
Score = 42.1 bits (21), Expect = 0.047
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 508 gcgtacctgcccgggcggccg 528
|||||||||||||||||||||
Sbjct: 24 gcgtacctgcccgggcggccg 4
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
||||||||||||||||||| |||||
Sbjct: 427 gtacctgcccgggcggccgttcgaa 451
>gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula cDNA clone mtgmacc120002b11,
mRNA sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||| ||||||||
Sbjct: 414 gtacctgcccgggcggtcgctcgaa 438
>gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula cDNA clone mtgmacc120004c11,
mRNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||| ||||||||
Sbjct: 406 gtacctgcccgggcggacgctcgaa 430
>gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula cDNA clone mtgmacc120005b12,
mRNA sequence
Length = 321
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||| ||||||||
Sbjct: 297 gtacctgcccgggcggacgctcgaa 321
>gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula cDNA clone mtgmacc120010e04,
mRNA sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.047
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcga 533
|||||||||||||||| |||||||
Sbjct: 504 gtacctgcccgggcggncgctcga 527
>gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula cDNA clone mtgmacc120011b09,
mRNA sequence
Length = 314
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||| ||||||||
Sbjct: 290 gtacctgcccgggcggacgctcgaa 314
>gb|CG963337.1|CG963337 MBEFI76TF mth2 Medicago truncatula genomic clone 44M7, DNA sequence
Length = 835
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 129 caacaatatgtttatgtgag 148
||||||||||||||||||||
Sbjct: 307 caacaatatgtttatgtgag 288
>gb|AJ499351.1|AJ499351 AJ499351 MTGIM Medicago truncatula cDNA clone mtgmacc120003a08,
mRNA sequence
Length = 415
Score = 40.1 bits (20), Expect = 0.18
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 506 aagcgtacctgcccgggcggccgctcga 533
|||||||||||||| |||||||||||||
Sbjct: 27 aagcgtacctgccc-ggcggccgctcga 1
>gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula cDNA clone mtgmacc120004a05,
mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcga 533
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula cDNA clone mtgmacc120009a05,
mRNA sequence
Length = 298
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcga 533
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AC148359.37| Medicago truncatula clone mth2-22k11, complete sequence
Length = 121162
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 129 caacaatatgtttatgtgag 148
||||||||||||||||||||
Sbjct: 9786 caacaatatgtttatgtgag 9805
>gb|AC169666.2| Medicago truncatula chromosome 7 clone mth2-66o11, *** SEQUENCING IN
PROGRESS ***
Length = 113041
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 80 ttcctttttattctaaatat 99
||||||||||||||||||||
Sbjct: 82064 ttcctttttattctaaatat 82045
>gb|AC150877.14| Medicago truncatula clone mth2-167e16, WORKING DRAFT SEQUENCE, 10
unordered pieces
Length = 116803
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 129 caacaatatgtttatgtgag 148
||||||||||||||||||||
Sbjct: 17712 caacaatatgtttatgtgag 17693
>gb|AC150877.15| Medicago truncatula clone mth2-167e16, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 115833
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 129 caacaatatgtttatgtgag 148
||||||||||||||||||||
Sbjct: 17712 caacaatatgtttatgtgag 17693
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,498
Number of Sequences: 392609
Number of extensions: 114498
Number of successful extensions: 8594
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8556
Number of HSP's gapped (non-prelim): 38
length of query: 534
length of database: 441,732,993
effective HSP length: 19
effective length of query: 515
effective length of database: 434,273,422
effective search space: 223650812330
effective search space used: 223650812330
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)