BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG953701.1|CG953701 MBELK15TF mth2 Medicago truncatula g... 50 3e-004
gb|AW687058.1|AW687058 NF005E09RT1F1070 Developing root Med... 50 3e-004
emb|CT033766.1| Medicago truncatula chromosome 5 clone mth4... 46 0.005
gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone m... 40 0.31
>gb|CG953701.1|CG953701 MBELK15TF mth2 Medicago truncatula genomic clone 80D5, DNA sequence
Length = 912
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgcaaccagtatt 677
||||| ||||||||||||| ||| |||| ||||||||| |||| ||||| ||||||
Sbjct: 912 gtccatccaccacattgatttcctatattatcagcatggcttccagcaacaagtatt 856
>gb|AW687058.1|AW687058 NF005E09RT1F1070 Developing root Medicago truncatula cDNA clone
NF005E09RT 5', mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgcaaccagtatt 677
||||| ||||||||||||||||| | || ||||||||| |||| ||||| ||||||
Sbjct: 345 gtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatt 289
>emb|CT033766.1| Medicago truncatula chromosome 5 clone mth4-42c9, WORKING DRAFT SEQUENCE
Length = 235225
Score = 46.1 bits (23), Expect = 0.005
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgcaaccagtattct 679
||||| || ||||||||||| || ||||||| |||||| ||||| ||||| || |||||
Sbjct: 149192 gtccatcctccacattgatagccgatatcattagcatgagttccagcaacaaggattct 149134
Score = 46.1 bits (23), Expect = 0.005
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgcaaccagtattct 679
||||| || ||||||||||| || ||||||| |||||| ||||| ||||| || |||||
Sbjct: 117095 gtccatcctccacattgatagccgatatcattagcatgagttccagcaacaaggattct 117153
>gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone mth2-16i24, complete
sequence
Length = 123655
Score = 40.1 bits (20), Expect = 0.31
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 604 ctccatgccatgctatcgtccagccaccacattgatatcc 643
|||| |||||| | || |||||||||||||| ||||||||
Sbjct: 77636 ctccttgccattcaatggtccagccaccacactgatatcc 77675
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 269,493
Number of Sequences: 392609
Number of extensions: 269493
Number of successful extensions: 20727
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20707
Number of HSP's gapped (non-prelim): 20
length of query: 885
length of database: 441,732,993
effective HSP length: 20
effective length of query: 865
effective length of database: 433,880,813
effective search space: 375306903245
effective search space used: 375306903245
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)