BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.2
(1078 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG934104.1|CG934104 MBENC70TR mth2 Medicago truncatula g... 44 0.024
gb|CG959762.1|CG959762 MBEKX59TR mth2 Medicago truncatula g... 44 0.024
gb|CG961263.1|CG961263 MBEJP43TRB mth2 Medicago truncatula ... 44 0.024
gb|BF648440.1|BF648440 NF047E08EC1F1066 Elicited cell cultu... 44 0.024
gb|BF649782.1|BF649782 NF084A11EC1F1083 Elicited cell cultu... 44 0.024
gb|BQ139914.1|BQ139914 NF026G11PH1F1087 Phoma-infected Medi... 44 0.024
gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone m... 44 0.024
gb|AC150372.15| Medicago truncatula clone mth2-151k24, comp... 40 0.38
>gb|CG934104.1|CG934104 MBENC70TR mth2 Medicago truncatula genomic clone 6L19, DNA sequence
Length = 882
Score = 44.1 bits (22), Expect = 0.024
Identities = 94/118 (79%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||| ||||||||||| || || || | |||||| ||||| || | ||| | |||
Sbjct: 134 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 193
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 194 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 251
>gb|CG959762.1|CG959762 MBEKX59TR mth2 Medicago truncatula genomic clone 77J22, DNA
sequence
Length = 930
Score = 44.1 bits (22), Expect = 0.024
Identities = 94/118 (79%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||| ||||||||||| || || || | |||||| ||||| || | ||| | |||
Sbjct: 160 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 219
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 220 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 277
>gb|CG961263.1|CG961263 MBEJP43TRB mth2 Medicago truncatula genomic clone 69H14, DNA
sequence
Length = 918
Score = 44.1 bits (22), Expect = 0.024
Identities = 94/118 (79%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||| ||||||||||| || || || | |||||| ||||| || | ||| | |||
Sbjct: 160 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 219
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 220 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 277
>gb|BF648440.1|BF648440 NF047E08EC1F1066 Elicited cell culture Medicago truncatula cDNA
clone NF047E08EC 5', mRNA sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.024
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 300 agtttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacg 359
||||||||||| ||||| | || ||||||||||| ||||| ||| ||| ||||| || |
Sbjct: 108 agtttgccaggacacagattgattacatccttggtaagaatccacggaaaatgagttatg 167
Query: 360 ttgtgggttt 369
|||| |||||
Sbjct: 168 ttgttggttt 177
>gb|BF649782.1|BF649782 NF084A11EC1F1083 Elicited cell culture Medicago truncatula cDNA
clone NF084A11EC 5', mRNA sequence
Length = 666
Score = 44.1 bits (22), Expect = 0.024
Identities = 94/118 (79%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||| ||||||||||| || || || | |||||| ||||| || | ||| | |||
Sbjct: 514 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 573
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 574 tacagtgattaccttgatgccgctgatactcctggatggtattggggacctaacttct 631
>gb|BQ139914.1|BQ139914 NF026G11PH1F1087 Phoma-infected Medicago truncatula cDNA clone
NF026G11PH 5', mRNA sequence
Length = 639
Score = 44.1 bits (22), Expect = 0.024
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 300 agtttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacg 359
||||||||||| ||||| | || ||||||||||| ||||| ||| ||| ||||| || |
Sbjct: 118 agtttgccaggacacagattgattacatccttggtaagaatccacggaaaatgagttatg 177
Query: 360 ttgtgggttt 369
|||| |||||
Sbjct: 178 ttgttggttt 187
>gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone mth2-193p1, complete
sequence
Length = 120579
Score = 44.1 bits (22), Expect = 0.024
Identities = 94/118 (79%)
Strand = Plus / Plus
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
|||||||| ||||||||||| || || || | |||||| ||||| || | ||| | |||
Sbjct: 24562 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 24621
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 24622 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 24679
>gb|AC150372.15| Medicago truncatula clone mth2-151k24, complete sequence
Length = 100538
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 334 caagaacccattgaagatga 353
||||||||||||||||||||
Sbjct: 3947 caagaacccattgaagatga 3928
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 236,779
Number of Sequences: 392609
Number of extensions: 236779
Number of successful extensions: 17113
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17081
Number of HSP's gapped (non-prelim): 32
length of query: 1078
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1058
effective length of database: 433,880,813
effective search space: 459045900154
effective search space used: 459045900154
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)