BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513496.1|CO513496 s13dSG12A1200085_139774 Glandular tr... 34 0.083
gb|CO514402.1|CO514402 s13dSG36B0700059_327464 Glandular tr... 34 0.083
gb|CO515002.1|CO515002 s13dSG26B0700061_397509 Glandular tr... 34 0.083
gb|CO512310.1|CO512310 s13dSG68E0200007_114134 Glandular tr... 32 0.33
gb|CO515406.1|CO515406 s13dSG50A1000081_417871 Glandular tr... 32 0.33
gb|CO516021.1|CO516021 s13dSG64A0700053_445370 Glandular tr... 32 0.33
gb|CO517016.1|CO517016 s13dSG31A1200087_468578 Glandular tr... 32 0.33
emb|AJ966572.1| Medicago sativa subsp. x varia mRNA for put... 32 0.33
>gb|CO513496.1|CO513496 s13dSG12A1200085_139774 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 421 aaggaagagaaacatgt 437
|||||||||||||||||
Sbjct: 530 aaggaagagaaacatgt 546
>gb|CO514402.1|CO514402 s13dSG36B0700059_327464 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 605
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 421 aaggaagagaaacatgt 437
|||||||||||||||||
Sbjct: 334 aaggaagagaaacatgt 350
>gb|CO515002.1|CO515002 s13dSG26B0700061_397509 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 469
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 421 aaggaagagaaacatgt 437
|||||||||||||||||
Sbjct: 334 aaggaagagaaacatgt 350
>gb|CO512310.1|CO512310 s13dSG68E0200007_114134 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 299 ttcttattcttcttct 314
||||||||||||||||
Sbjct: 148 ttcttattcttcttct 163
>gb|CO515406.1|CO515406 s13dSG50A1000081_417871 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 475
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 299 ttcttattcttcttct 314
||||||||||||||||
Sbjct: 74 ttcttattcttcttct 89
>gb|CO516021.1|CO516021 s13dSG64A0700053_445370 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 185
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 299 ttcttattcttcttct 314
||||||||||||||||
Sbjct: 99 ttcttattcttcttct 84
>gb|CO517016.1|CO517016 s13dSG31A1200087_468578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 299 ttcttattcttcttct 314
||||||||||||||||
Sbjct: 99 ttcttattcttcttct 114
>emb|AJ966572.1| Medicago sativa subsp. x varia mRNA for putative Rho GTPase (rop3
gene)
Length = 1106
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 299 ttcttattcttcttct 314
||||||||||||||||
Sbjct: 122 ttcttattcttcttct 107
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1166
Number of Sequences: 7669
Number of extensions: 1166
Number of successful extensions: 384
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 10
length of query: 466
length of database: 3,745,706
effective HSP length: 15
effective length of query: 451
effective length of database: 3,630,671
effective search space: 1637432621
effective search space used: 1637432621
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)