BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829501.2.1
(1141 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U83591.1|MSU83591 Medicago sativa class I chitinase mRNA... 38 0.013
gb|U83592.1|MSU83592 Medicago sativa class I chitinase mRNA... 38 0.013
gb|AY804254.1| Medicago sativa chitinase (Chi) mRNA, comple... 38 0.013
gb|CO512149.1|CO512149 s13dSG34E0300019_108618 Glandular tr... 34 0.21
>gb|U83591.1|MSU83591 Medicago sativa class I chitinase mRNA, complete cds
Length = 1259
Score = 38.2 bits (19), Expect = 0.013
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 371 acgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 417
||||| ||||| || ||||| || ||||| ||||||||||| |||||
Sbjct: 752 acgtcatggcaagatggcttaggtgactggggcgtcatccaaaacca 706
>gb|U83592.1|MSU83592 Medicago sativa class I chitinase mRNA, complete cds
Length = 1267
Score = 38.2 bits (19), Expect = 0.013
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 371 acgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 417
||||| ||||| || ||||| || ||||| ||||||||||| |||||
Sbjct: 753 acgtcatggcaagatggcttaggtgactggggcgtcatccaaaacca 707
>gb|AY804254.1| Medicago sativa chitinase (Chi) mRNA, complete cds
Length = 987
Score = 38.2 bits (19), Expect = 0.013
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 371 acgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 417
||||| ||||| || ||||| || ||||| ||||||||||| |||||
Sbjct: 722 acgtcatggcaagatggcttaggtgactggggcgtcatccaaaacca 676
>gb|CO512149.1|CO512149 s13dSG34E0300019_108618 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 581
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 871 gatgatggacgccacgc 887
|||||||||||||||||
Sbjct: 292 gatgatggacgccacgc 308
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1337
Number of Sequences: 7669
Number of extensions: 1337
Number of successful extensions: 309
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 7
length of query: 1141
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1125
effective length of database: 3,623,002
effective search space: 4075877250
effective search space used: 4075877250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)