BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716296.2.7
(851 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular tr... 50 3e-006
gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA bin... 42 6e-004
gb|AJ410122.1|AJ410122 AJ410122 Medicago sativa library (Ka... 34 0.15
>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 398
Score = 50.1 bits (25), Expect = 3e-006
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 128 ggctgatgtggagtaccgttgcttcgtcggcgggcttgcctgggccacc 176
||||||||| || ||||| ||||||||||| || ||||| |||||||||
Sbjct: 82 ggctgatgttgaataccgatgcttcgtcggaggtcttgcatgggccacc 130
>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
partial cds
Length = 318
Score = 42.1 bits (21), Expect = 6e-004
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 128 ggctgatgtggagtaccgttgcttcgtcggcgggcttgcctgggccacc 176
||||||||| || |||| ||||||||||| || ||||| |||||||||
Sbjct: 6 ggctgatgttgaagaccgatgcttcgtcggaggtcttgcatgggccacc 54
>gb|AJ410122.1|AJ410122 AJ410122 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U452, mRNA sequence
Length = 696
Score = 34.2 bits (17), Expect = 0.15
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 775 gttcgcagctatttttgtcca 795
|||||||| ||||||||||||
Sbjct: 695 gttcgcaggtatttttgtcca 675
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 841
Number of Sequences: 7669
Number of extensions: 841
Number of successful extensions: 231
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 7
length of query: 851
length of database: 3,745,706
effective HSP length: 16
effective length of query: 835
effective length of database: 3,623,002
effective search space: 3025206670
effective search space used: 3025206670
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)