BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAC22h02.sg.3.6
(2204 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase 1243 0.0
gb|BE558319.1|BE558319 HV_CEb0017D09f Hordeum vulgare seedl... 743 0.0
gb|BJ465410.1|BJ465410 BJ465410 K. Sato unpublished cDNA li... 729 0.0
gb|BU986600.1|BU986600 HF12F20r HF Hordeum vulgare subsp. v... 688 0.0
gb|CB883432.1|CB883432 HQ02D21w HQ Hordeum vulgare subsp. v... 680 0.0
gb|AV914653.1|AV914653 AV914653 K. Sato unpublished cDNA li... 656 0.0
gb|AV927083.1|AV927083 AV927083 K. Sato unpublished cDNA li... 654 0.0
gb|BG414815.2|BG414815 HVSMEk0003N06f Hordeum vulgare testa... 650 0.0
gb|BU989405.1|BU989405 HF21K10r HF Hordeum vulgare subsp. v... 615 e-174
gb|AV915030.1|AV915030 AV915030 K. Sato unpublished cDNA li... 613 e-173
gb|BU987930.1|BU987930 HF16C20r HF Hordeum vulgare subsp. v... 593 e-167
gb|BU988741.1|BU988741 HF18I24r HF Hordeum vulgare subsp. v... 593 e-167
gb|BF262981.3|BF262981 HV_CEa0005H19f Hordeum vulgare seedl... 583 e-165
gb|BU987530.1|BU987530 HF15A03r HF Hordeum vulgare subsp. v... 579 e-163
gb|AV931911.1|AV931911 AV931911 K. Sato unpublished cDNA li... 569 e-160
gb|CD664048.1|CD664048 UCRHV18_07cb11_b1 Drought-stressed D... 557 e-157
gb|AV920160.1|AV920160 AV920160 K. Sato unpublished cDNA li... 547 e-154
gb|BU988064.1|BU988064 HF16J01r HF Hordeum vulgare subsp. v... 539 e-151
gb|BF629864.2|BF629864 HVSMEb0007C02f Hordeum vulgare seedl... 533 e-150
gb|AV908957.1|AV908957 AV908957 K. Sato unpublished cDNA li... 527 e-148
gb|CA026543.1|CA026543 HZ56D11r HZ Hordeum vulgare subsp. v... 519 e-145
gb|CA024235.1|CA024235 HZ48L22r HZ Hordeum vulgare subsp. v... 515 e-144
gb|CA009523.1|CA009523 HU14F23r HU Hordeum vulgare subsp. v... 498 e-139
gb|BJ468655.1|BJ468655 BJ468655 K. Sato unpublished cDNA li... 482 e-134
gb|BQ760785.1|BQ760785 EBro03_SQ003_H12_R root, 3 week, wat... 478 e-133
gb|CA021472.1|CA021472 HZ40D08r HZ Hordeum vulgare subsp. v... 478 e-133
gb|AV910842.1|AV910842 AV910842 K. Sato unpublished cDNA li... 474 e-132
gb|AV919745.1|AV919745 AV919745 K. Sato unpublished cDNA li... 462 e-128
gb|BQ756913.1|BQ756913 EBem10_SQ002_C11_R embryo, 2 Day ger... 456 e-126
gb|BF254156.3|BF254156 HVSMEf0003C21f Hordeum vulgare seedl... 454 e-126
gb|BQ660999.1|BQ660999 HM01H06w HM Hordeum vulgare subsp. v... 454 e-126
gb|BU983030.1|BU983030 HA28F12r HA Hordeum vulgare subsp. v... 424 e-117
gb|BG367366.2|BG367366 HVSMEi0012A07f Hordeum vulgare 20 DA... 416 e-114
gb|BF254142.3|BF254142 HVSMEf0003C07f Hordeum vulgare seedl... 414 e-114
gb|CA023094.1|CA023094 HZ45D14r HZ Hordeum vulgare subsp. v... 412 e-113
gb|BQ468505.1|BQ468505 HM01H06T HM Hordeum vulgare subsp. v... 408 e-112
gb|BF256860.2|BF256860 HVSMEf0011D11f Hordeum vulgare seedl... 400 e-110
gb|AV927775.1|AV927775 AV927775 K. Sato unpublished cDNA li... 400 e-110
gb|BQ665441.1|BQ665441 HX03K01u HX Hordeum vulgare subsp. v... 400 e-110
gb|BU971122.1|BU971122 HB16K20r BC Hordeum vulgare subsp. v... 383 e-104
gb|BG299601.1|BG299601 HVSMEa0020P15f Hordeum vulgare seedl... 375 e-102
gb|BG418037.1|BG418037 HVSMEk0020P20f Hordeum vulgare testa... 373 e-101
gb|CA015391.1|CA015391 HT14C18r HT Hordeum vulgare subsp. v... 373 e-101
gb|AV917176.1|AV917176 AV917176 K. Sato unpublished cDNA li... 367 1e-099
gb|BG415778.1|BG415778 HVSMEk0007M12f Hordeum vulgare testa... 351 6e-095
gb|BE216164.2|BE216164 HV_CEb0009K15f Hordeum vulgare seedl... 335 4e-090
gb|CA019283.1|CA019283 HV11I02r HV Hordeum vulgare subsp. v... 333 1e-089
gb|BF620832.2|BF620832 HVSMEc0020P15f Hordeum vulgare seedl... 319 2e-085
gb|AV923068.1|AV923068 AV923068 K. Sato unpublished cDNA li... 317 9e-085
gb|CA015932.1|CA015932 HV11I02u HV Hordeum vulgare subsp. v... 315 3e-084
gb|BM368413.2|BM368413 EBem08_SQ002_C14_R embryo, 40 DPA, n... 301 5e-080
gb|CA012719.1|CA012719 HT06D20r HT Hordeum vulgare subsp. v... 285 3e-075
gb|BQ470655.1|BQ470655 HX03K01r HX Hordeum vulgare subsp. v... 260 2e-067
gb|CA006354.1|CA006354 HU14F23u HU Hordeum vulgare subsp. v... 246 3e-063
gb|BG416002.2|BG416002 HVSMEk0009F21f Hordeum vulgare testa... 232 4e-059
gb|BJ465802.1|BJ465802 BJ465802 K. Sato unpublished cDNA li... 226 2e-057
gb|BF262928.3|BF262928 HV_CEa0005F13f Hordeum vulgare seedl... 224 1e-056
gb|BF262934.3|BF262934 HV_CEa0005F19f Hordeum vulgare seedl... 200 1e-049
gb|BQ757287.1|BQ757287 EBem10_SQ003_J13_R embryo, 2 Day ger... 196 2e-048
gb|CA011328.1|CA011328 HT06D20u HT Hordeum vulgare subsp. v... 163 3e-038
gb|AJ461200.1|AJ461200 AJ461200 S00002 Hordeum vulgare subs... 161 1e-037
gb|BG366252.1|BG366252 HVSMEi0006G13f Hordeum vulgare 20 DA... 143 3e-032
emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene 129 4e-028
gb|BF626759.2|BF626759 HVSMEb0001E06f Hordeum vulgare seedl... 127 2e-027
gb|BF618268.2|BF618268 HVSMEc0005D13f Hordeum vulgare seedl... 117 2e-024
gb|AV915035.1|AV915035 AV915035 K. Sato unpublished cDNA li... 100 4e-019
gb|BQ761533.1|BQ761533 EBem10_SQ001_B02_R embryo, 2 Day ger... 82 9e-014
gb|BI960782.1|BI960782 HVSMEk0016B23f Hordeum vulgare testa... 76 6e-012
gb|BJ456989.1|BJ456989 BJ456989 K. Sato unpublished cDNA li... 52 8e-005
gb|BF626876.2|BF626876 HVSMEb0001J06f Hordeum vulgare seedl... 40 0.30
>emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase
Length = 1710
Score = 1243 bits (627), Expect = 0.0
Identities = 1137/1307 (86%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||| ||
Sbjct: 199 gatgattgggagggcgagttcttccccggcattgacaagatcaactatgagggtcctacc 258
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 259 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 318
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| | || ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 319 atgaaggattggtttcggttcagcgtggcgttttggcatacgttccggggtactggagga 378
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 379 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 438
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 439 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 498
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 499 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 558
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 559 aacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagcca 618
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagc 1011
|| ||||| |||||||| || || |||||||| ||||||||||| || ||||||||||||
Sbjct: 619 ttatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctactagc 678
Query: 1012 ccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtcact 1071
|||||||| || || ||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 679 ccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttact 738
Query: 1072 cactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaactctt 1131
||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 739 cactacctaggcggtgagaactacgtattctggggtggaagagagggttaccaaactctt 798
Query: 1132 ctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgctgtt 1191
|| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct: 799 ctcaataccgatatgaagagggaacttgaacatttggctaactttcttcaagctgctgtt 858
Query: 1192 gactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacaggaa 1251
|| ||||||||||||| || || ||||||||| | |||||||||||||| ||||| |||
Sbjct: 859 aaccacaagaagaagatcggctttaacggaacattgttgatagagcctaagccacaagaa 918
Query: 1252 ccaacaaaacaccagtatgactgggatgttgcgactacgtttgcttttctacagaagtac 1311
|||||||| || |||||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 919 ccaacaaagcatcagtatgactgggatgttgcaactacattctctttcctacagaagttt 978
Query: 1312 ggtcttacaggagagttcaagattaatgttgagtgcaaccatgctactctatctggacac 1371
||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 979 ggtcttacaggggaattcaagataaatgttgagtgcaaccatgctactctctctggacat 1038
Query: 1372 agctgccatcatgaattggagactgcacggattaatgggctgcttggaaatatcgatgca 1431
||||||||||| || | ||||||||||| ||||||| | |||||||| || ||||||
Sbjct: 1039 agctgccatcacgagcttgagactgcacgcattaatgacattcttggaaacattgatgca 1098
Query: 1432 aacactggtgatcctcaagttggttgggacacagatcagttcatgacagacattgcagag 1491
|||||||||||||| || |||||||||||||| ||| ||||| | ||||||||| ||||
Sbjct: 1099 aacactggtgatccacaggttggttgggacacggatgagttccttacagacatttcagaa 1158
Query: 1492 gctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggtggtttcaac 1551
||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 1159 gctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctggtggcttcaac 1218
Query: 1552 tttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttcttgcccatatc 1611
||| | ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct: 1219 ttttacgccaaattgcggagggagagtactgatgttgaggacctgtttattgcccatatc 1278
Query: 1612 tccggaatggacaccctggcacgtggcctccgtaacgttgccaagctgattgaggatggt 1671
|| || ||||||||| |||| || |||| ||| || |||| |||||||||||||||||||
Sbjct: 1279 tctgggatggacaccatggcccgcggccgccgcaatgttgtcaagctgattgaggatggt 1338
Query: 1672 tccctagatgatcttgtccgcaagcggtaccagagctttgatagtgagattggtgccttg 1731
||||| || || ||||| ||||| || |||||||||||||| | ||||||||||||| ||
Sbjct: 1339 tccctggacgagcttgtacgcaaacgctaccagagctttgacactgagattggtgccatg 1398
Query: 1732 atcgaggctgggaaaggagactttgagacgctagaaaagaaggttctagagtggggtgag 1791
|||||||||||||| || |||||||| |||||||||||||||| | |||||||| |||
Sbjct: 1399 atcgaggctgggaagggcgactttgaaacgctagaaaagaaggccttggagtggggcgag 1458
Query: 1792 cccactgttgcatccggcaaacaggaactggcggagattctgttcca 1838
|| || ||| |||| |||||||||||| |||| ||||| ||||||||
Sbjct: 1459 ccaaccgttccatcgggcaaacaggaattggctgagatgctgttcca 1505
>gb|BE558319.1|BE558319 HV_CEb0017D09f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017D09f, mRNA sequence
Length = 811
Score = 743 bits (375), Expect = 0.0
Identities = 637/723 (88%), Gaps = 1/723 (0%)
Strand = Plus / Plus
Query: 1117 ggttaccaaa-ctcttctgaatactgatatgaagagagaacttgaccatctggctaactt 1175
|||||||||| ||||||| ||||| ||||||||||| |||||||| ||| ||||||||||
Sbjct: 22 ggttaccaaanctcttctcaataccgatatgaagagggaacttgaacatttggctaactt 81
Query: 1176 tcttcaagctgctgttgactacaagaagaagattggattcaacggaacactattgataga 1235
|||||||||||||||| || ||||||||||||| || || ||||||||| | ||||||||
Sbjct: 82 tcttcaagctgctgttaaccacaagaagaagatcggctttaacggaacattgttgataga 141
Query: 1236 gcctaaaccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgc 1295
|||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| || |
Sbjct: 142 gcctaagccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacattctc 201
Query: 1296 ttttctacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgc 1355
||| |||||||||| ||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 202 tttcctacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgc 261
Query: 1356 tactctatctggacacagctgccatcatgaattggagactgcacggattaatgggctgct 1415
|||||| |||||||| ||||||||||| || | ||||||||||| ||||||| | ||
Sbjct: 262 tactctctctggacatagctgccatcacgagcttgagactgcacgcattaatgacattct 321
Query: 1416 tggaaatatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcat 1475
|||||| || |||||||||||||||||||| ||||||||||||||||| ||| ||||| |
Sbjct: 322 tggaaacattgatgcaaacactggtgatccacaagttggttgggacacggatgagttcct 381
Query: 1476 gacagacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgc 1535
||||||||| |||| ||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct: 382 tacagacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgc 441
Query: 1536 acctggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacat 1595
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct: 442 gcctggtggcttcaactttgacgccaaattgcggagggagagtactgatgttgaggacct 501
Query: 1596 gtttcttgcccatatctccggaatggacaccctggcacgtggcctccgtaacgttgccaa 1655
|||| ||||||||||||| || ||||||||| |||| || |||||||| || ||||||||
Sbjct: 502 gtttattgcccatatctctgggatggacaccatggcccgcggcctccgcaatgttgccaa 561
Query: 1656 gctgattgaggatggttccctagatgatcttgtccgcaagcggtaccagagctttgatag 1715
||||||||||||||||||||| || || ||||| ||||| || |||||||||||||| |
Sbjct: 562 gctgattgaggatggttccctggacgagcttgtacgcaaacgctaccagagctttgacac 621
Query: 1716 tgagattggtgccttgatcgaggctgggaaaggagactttgagacgctagaaaagaaggt 1775
||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 622 tgagattggtgccatgatcgaggctgggaagggcgactttgaaacgctagaaaagaaggt 681
Query: 1776 tctagagtggggtgagcccactgttgcatccggcaaacaggaactggcggagattctgtt 1835
| |||||||| ||||| || ||| |||| |||||||||||| |||| ||||| |||||
Sbjct: 682 cttggagtggggcgagccaaccgttccatcgggcaaacaggaattggctgagatgctgtt 741
Query: 1836 cca 1838
|||
Sbjct: 742 cca 744
>gb|BJ465410.1|BJ465410 BJ465410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l12 5', mRNA sequence
Length = 717
Score = 729 bits (368), Expect = 0.0
Identities = 624/708 (88%), Gaps = 1/708 (0%)
Strand = Plus / Plus
Query: 739 tggccttggg-aggacggcacaaattctttggccatggctaagagaagaatgagagctca 797
|||||||||| |||| ||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct: 10 tggccttgggnaggatggcaccaattccttggccatggctaagagaagaatgaaagctca 69
Query: 798 ctttgagttcatggagaagttgggagttgacaaatggtgcttccatgacagggatattgc 857
||| ||||||||||||||| | |||||||| | |||||||||||||||||||| || ||
Sbjct: 70 cttcgagttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgc 129
Query: 858 cccggatgggaagactcttgaagaaacaaattctaacttggatgagatagtccagctggc 917
||| ||||| || || || | ||||||||| ||||||||||||||||||| |||||||
Sbjct: 130 ccctgatggcaaaacactcgcggaaacaaatgctaacttggatgagatagttgagctggc 189
Query: 918 aaagcagctgcagggtgagaccaatataaagccattgtggggtactgcacagctctttat 977
|||||| || ||| |||||||||||||||||||||| ||||| |||||||| || || ||
Sbjct: 190 aaagcaactccagagtgagaccaatataaagccattatggggaactgcacaacttttcat 249
Query: 978 gcatcctcgttacatgcatggcgctgctactagcccagaggttaaagtatatgcttatgc 1037
|||||| ||||||||||| || |||||||||||||||||||| || || |||||||||||
Sbjct: 250 gcatccacgttacatgcacggagctgctactagcccagaggtcaaggtgtatgcttatgc 309
Query: 1038 ggctgcacaagttaagaaagctttggaggtcactcactacctaggtggtgaaaactatgt 1097
||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||
Sbjct: 310 tgctgctcaagtgaagaaagctttggaggttactcactacctaggcggtgagaactacgt 369
Query: 1098 gttctggggtggaagagagggttaccaaactcttctgaatactgatatgaagagagaact 1157
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct: 370 attctggggtggaagagagggttaccaaactcttctcaataccgatatgaagagggaact 429
Query: 1158 tgaccatctggctaactttcttcaagctgctgttgactacaagaagaagattggattcaa 1217
||| ||| |||||||||||||||||||||||||| || ||||||||||||| || || ||
Sbjct: 430 tgaacatttggctaactttcttcaagctgctgttaaccacaagaagaagatcggctttaa 489
Query: 1218 cggaacactattgatagagcctaaaccacaggaaccaacaaaacaccagtatgactggga 1277
||||||| | |||||||||||||| ||||| ||||||||||| || ||||||||||||||
Sbjct: 490 cggaacattgttgatagagcctaagccacaagaaccaacaaagcatcagtatgactggga 549
Query: 1278 tgttgcgactacgtttgcttttctacagaagtacggtcttacaggagagttcaagattaa 1337
|||||| ||||| || |||| |||||||||| ||||||||||| || |||||||| ||
Sbjct: 550 tgttgcaactacattctctttcctacagaagtttggtcttacaggggaattcaagataaa 609
Query: 1338 tgttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgc 1397
|||||||||||||||||||||||| |||||||| ||||||||||| || | ||||||||
Sbjct: 610 tgttgagtgcaaccatgctactctctctggacatagctgccatcacgagcttgagactgc 669
Query: 1398 acggattaatgggctgcttggaaatatcgatgcaaacactggtgatcc 1445
||| ||||||| | |||||||| || ||||||||||||||||||||
Sbjct: 670 acgcattaatgacattcttggaaacattgatgcaaacactggtgatcc 717
>gb|BU986600.1|BU986600 HF12F20r HF Hordeum vulgare subsp. vulgare cDNA clone HF12F20
5-PRIME, mRNA sequence
Length = 635
Score = 688 bits (347), Expect = 0.0
Identities = 557/627 (88%)
Strand = Plus / Plus
Query: 1000 gctgctactagcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagct 1059
|||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||
Sbjct: 5 gctgctactagcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagct 64
Query: 1060 ttggaggtcactcactacctaggtggtgaaaactatgtgttctggggtggaagagagggt 1119
|||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct: 65 ttggaggttactcactacctaggcggtgagaactacgtattctggggtggaagagagggt 124
Query: 1120 taccaaactcttctgaatactgatatgaagagagaacttgaccatctggctaactttctt 1179
|||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||||||
Sbjct: 125 taccaaactcttctcaataccgatatgaagagggaacttgaacatttggctaactttctt 184
Query: 1180 caagctgctgttgactacaagaagaagattggattcaacggaacactattgatagagcct 1239
|||||||||||| || ||||||||||||| || || || |||||| | ||||||||||||
Sbjct: 185 caagctgctgttaaccacaagaagaagatcggctttaatggaacattgttgatagagcct 244
Query: 1240 aaaccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgctttt 1299
|| ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||
Sbjct: 245 aagccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacattctctttc 304
Query: 1300 ctacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctact 1359
|||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |||
Sbjct: 305 ctacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgccact 364
Query: 1360 ctatctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttgga 1419
|| |||||||| ||||||||||| || | ||||||||||| ||||||| | ||||||
Sbjct: 365 ctctctggacatagctgccatcacgagcttgagactgcacgcattaatgacattcttgga 424
Query: 1420 aatatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgaca 1479
|| || |||||||||||||||||||| ||||||||||||||||| ||| ||||| | |||
Sbjct: 425 aacattgatgcaaacactggtgatccacaagttggttgggacacggatgagttccttaca 484
Query: 1480 gacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacct 1539
|||||| |||| ||||| ||| |||||||||||||||||||||||| ||||||||| |||
Sbjct: 485 gacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcct 544
Query: 1540 ggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatgttt 1599
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 545 ggtggcttcaactttgacgccaaattgcggagggagagtactgatgttgaggacctgttt 604
Query: 1600 cttgcccatatctccggaatggacacc 1626
||||||||||||| || |||||||||
Sbjct: 605 attgcccatatctctgggatggacacc 631
>gb|CB883432.1|CB883432 HQ02D21w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02D21
3-PRIME, mRNA sequence
Length = 658
Score = 680 bits (343), Expect = 0.0
Identities = 572/647 (88%), Gaps = 1/647 (0%)
Strand = Plus / Plus
Query: 1051 aagaaagctttggaggtcactcactacctaggtggtgaaaactatgtgttctggggtgga 1110
||||||||||||||||| |||||||||||| | ||||| ||||| || ||||||||||||
Sbjct: 13 aagaaagctttggaggttactcactacctatgcggtgagaactacgtattctggggtgga 72
Query: 1111 agagagggttaccaaactcttctgaatactgatatgaagagagaacttgaccatctggct 1170
||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |||||
Sbjct: 73 agagagggttaccaaactcttctcaataccgatatgaagagggaacttgaacatttggct 132
Query: 1171 aactttcttcaagctgctgttgactacaagaagaagattggattcaacggaacactattg 1230
||||||||||||||||||||| || ||||||||||||| || || || |||||| | |||
Sbjct: 133 aactttcttcaagctgctgttaaccacaagaagaagatcggctttaatggaacattgttg 192
Query: 1231 atagagcctaaaccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacg 1290
||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 193 atagagcctaagccacaagaaccaacaaagcatcagtatgactgggatgttgcaactaca 252
Query: 1291 tttgcttttctacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaac 1350
|| |||| |||||||||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 253 ttctctttcctacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaac 312
Query: 1351 catgctactctatctggacacagctgccatcatgaattggagactgcacggattaatggg 1410
||||| ||||| |||||||| ||||||||||| || | ||||||||||| |||||||
Sbjct: 313 catgccactctctctggacatagctgccatcacgagcttgagactgcacgcattaatgac 372
Query: 1411 ctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttgggacacagatcag 1470
| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct: 373 attcttggaaacattgatgcaaacactggtgatccacaagttggttgggacacggatgag 432
Query: 1471 ttcatgacagacattgcagaggctactttggttatgtcaagtgtagttaagaatggtgga 1530
||| | ||||||||| |||| ||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 433 ttccttacagacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatgga 492
Query: 1531 cttgcacctggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgag 1590
||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 493 cttgcgcctggtggcttcaactttgacgccaaattgcggagggagagtactgatgttgag 552
Query: 1591 gacatgtttcttgcccatatctccggaatggacaccctggcacgtggcctccgtaacgtt 1650
||| ||||| ||||||||||||| || ||||||| | |||| || |||||||| || |||
Sbjct: 553 gacctgtttattgcccatatctctgggatggaca-catggcccgcggcctccgcaatgtt 611
Query: 1651 gccaagctgattgaggatggttccctagatgatcttgtccgcaagcg 1697
|||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 612 gccaagctgattgaggatggttccctggacgagcttgtacgcaagcg 658
>gb|AV914653.1|AV914653 AV914653 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7g12 5', mRNA sequence
Length = 589
Score = 656 bits (331), Expect = 0.0
Identities = 524/589 (88%)
Strand = Plus / Plus
Query: 1002 tgctactagcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagcttt 1061
|||||||||||||| || || || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 1 tgctactagcccagnngtcaaggtgtatgcttatgctgctgctcaagtgaagaaagcttt 60
Query: 1062 ggaggtcactcactacctaggtggtgaaaactatgtgttctggggtggaagagagggtta 1121
|||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||||||
Sbjct: 61 ggaggttactcactacctaggcggtgagaactacgtattctggggtggaagagagggtta 120
Query: 1122 ccaaactcttctgaatactgatatgaagagagaacttgaccatctggctaactttcttca 1181
|||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||
Sbjct: 121 ccaaactcttctcaataccgatatgaagagggaacttgaacatttggctaactttcttca 180
Query: 1182 agctgctgttgactacaagaagaagattggattcaacggaacactattgatagagcctaa 1241
|||||||||| || ||||||||||||| || || ||||||||| | ||||||||||||||
Sbjct: 181 agctgctgttaaccacaagaagaagatcggctttaacggaacattgttgatagagcctaa 240
Query: 1242 accacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgcttttct 1301
||||| ||||||||||| || |||||||||||||||||||| ||||| || |||| ||
Sbjct: 241 gccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacattctctttcct 300
Query: 1302 acagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctactct 1361
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 301 acagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgctactct 360
Query: 1362 atctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttggaaa 1421
|||||||| ||||||||||| || | ||||||||||| ||||||| | ||||||||
Sbjct: 361 ctctggacatagctgccatcacgagcttgagactgcacgcattaatgacattcttggaaa 420
Query: 1422 tatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgacaga 1481
|| |||||||||||||||||||| ||||||||||||||||| ||| ||||| | |||||
Sbjct: 421 cattgatgcaaacactggtgatccacaagttggttgggacacggatgagttccttacaga 480
Query: 1482 cattgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacctgg 1541
|||| |||| ||||| ||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct: 481 catttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctgg 540
Query: 1542 tggtttcaactttgatgccaaattgcggagggaaagtactgatgttgag 1590
||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 541 tggcttcaactttgatgccaaattgcggagggagagtactgatgttgag 589
>gb|AV927083.1|AV927083 AV927083 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26l01 5', mRNA sequence
Length = 674
Score = 654 bits (330), Expect = 0.0
Identities = 568/646 (87%), Gaps = 1/646 (0%)
Strand = Plus / Plus
Query: 819 gggagttgacaaatggtgcttccatgacaggg-atattgccccggatgggaagactcttg 877
||||||||| | ||||||||||||||||||| | || ||||| ||||| || || || |
Sbjct: 11 gggagttgaaaggtggtgcttccatgacagggnacatcgcccctgatggcaaaacactcg 70
Query: 878 aagaaacaaattctaacttggatgagatagtccagctggcaaagcagctgcagggtgaga 937
||||||||| ||||||||||||||||||| ||||||||||||| || ||| ||||||
Sbjct: 71 cggaaacaaatgctaacttggatgagatagttgagctggcaaagcaactccagagtgaga 130
Query: 938 ccaatataaagccattgtggggtactgcacagctctttatgcatcctcgttacatgcatg 997
|||||||||||||||| ||||| |||||||| || || |||||||| ||||||||||| |
Sbjct: 131 ccaatataaagccattatggggaactgcacaacttttcatgcatccacgttacatgcacg 190
Query: 998 gcgctgctactagcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaag 1057
| |||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 191 gagctgctactagcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaag 250
Query: 1058 ctttggaggtcactcactacctaggtggtgaaaactatgtgttctggggtggaagagagg 1117
|||||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||
Sbjct: 251 ctttggaggttactcactacctaggcggtgagaactacgtattctggggtggaagagagg 310
Query: 1118 gttaccaaactcttctgaatactgatatgaagagagaacttgaccatctggctaactttc 1177
|||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||||
Sbjct: 311 gttaccaaactcttctcaataccgatatgaagagggaacttgaacatttggctaactttc 370
Query: 1178 ttcaagctgctgttgactacaagaagaagattggattcaacggaacactattgatagagc 1237
|||||||||||||| || ||||||||||||| || || ||||||||| | ||||||||||
Sbjct: 371 ttcaagctgctgttaaccacaagaagaagatcggctttaacggaacattgttgatagagc 430
Query: 1238 ctaaaccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgctt 1297
|||| ||||| ||||||||||| || |||||||||||||||||||| ||||| || |||
Sbjct: 431 ctaagccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacattctctt 490
Query: 1298 ttctacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgcta 1357
| |||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 491 tcctacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgcta 550
Query: 1358 ctctatctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttg 1417
|||| |||||||| ||||||||||| || | ||||||||||| ||||||| | ||||
Sbjct: 551 ctctctctggacatagctgccatcacgagcttgagactgcacgcattaatgacattcttg 610
Query: 1418 gaaatatcgatgcaaacactggtgatcctcaagttggttgggacac 1463
|||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 611 gaaacattgatgcaaacactggtgatccacaagttggttgggacac 656
>gb|BG414815.2|BG414815 HVSMEk0003N06f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0003N06f, mRNA sequence
Length = 798
Score = 650 bits (328), Expect = 0.0
Identities = 535/604 (88%)
Strand = Plus / Plus
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 1 agcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggtt 60
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 61 actcactacctaggcggtgagaactacgtattctggggtggaagagagggttaccaaact 120
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
||||| ||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct: 121 cttctcaataccgatatgaagagggaacttgaacatttggctaactttcttcaagctgct 180
Query: 1189 gttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacag 1248
||| || ||||||||||||| || || ||||||||| | |||||||||||||| |||||
Sbjct: 181 gttaaccacaagaagaagatcggctttaacggaacattgttgatagagcctaagccacaa 240
Query: 1249 gaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgcttttctacagaag 1308
||||||||||| || |||||||||||||||||||| ||||| || |||| |||||||||
Sbjct: 241 gaaccaacaaagcatcagtatgactgggatgttgcaactacattctctttcctacagaag 300
Query: 1309 tacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctactctatctgga 1368
| ||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 301 tttggtcttacaggggaattcaagataaatgttgagtgcaaccatgctactctctctgga 360
Query: 1369 cacagctgccatcatgaattggagactgcacggattaatgggctgcttggaaatatcgat 1428
|| ||||||||||| || | ||||||||||| ||||||| | |||||||| || |||
Sbjct: 361 catagctgccatcacgagcttgagactgcacgcattaatgacattcttggaaacattgat 420
Query: 1429 gcaaacactggtgatcctcaagttggttgggacacagatcagttcatgacagacattgca 1488
||||||||||||||||| ||||||||||||||||| ||| ||||| | ||||||||| ||
Sbjct: 421 gcaaacactggtgatccacaagttggttgggacacggatgagttccttacagacatttca 480
Query: 1489 gaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggtggtttc 1548
|| ||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| |||
Sbjct: 481 gaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcccctggtggcttc 540
Query: 1549 aactttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttcttgcccat 1608
|||||||| ||| |||||||||| || |||||||||||||| ||| ||||| ||||||||
Sbjct: 541 aactttgacgcccaattgcggagagagagtactgatgttgaagacctgtttattgcccat 600
Query: 1609 atct 1612
||||
Sbjct: 601 atct 604
>gb|BU989405.1|BU989405 HF21K10r HF Hordeum vulgare subsp. vulgare cDNA clone HF21K10
5-PRIME, mRNA sequence
Length = 596
Score = 615 bits (310), Expect = e-174
Identities = 522/593 (88%)
Strand = Plus / Plus
Query: 1183 gctgctgttgactacaagaagaagattggattcaacggaacactattgatagagcctaaa 1242
||||||||| || ||||||||||||| || || || |||||| | ||||||||||||||
Sbjct: 1 gctgctgttaaccacaagaagaagatcggctttaatggaacattgttgatagagcctaag 60
Query: 1243 ccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgcttttcta 1302
||||| ||||||||||| || |||||||||||||||||||| ||||| || |||| |||
Sbjct: 61 ccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacattctctttccta 120
Query: 1303 cagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctactcta 1362
||||||| ||||||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct: 121 cagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgccactctc 180
Query: 1363 tctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttggaaat 1422
|||||||| ||||||||||| || | ||||||||||| ||||||| | ||||||||
Sbjct: 181 tctggacatagctgccatcacgagcttgagactgcacgcattaatgacattcttggaaac 240
Query: 1423 atcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgacagac 1482
|| |||||||||||||||||||| ||||||||||||||||| ||| ||||| | ||||||
Sbjct: 241 attgatgcaaacactggtgatccacaagttggttgggacacggatgagttccttacagac 300
Query: 1483 attgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggt 1542
||| |||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 301 atttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctggt 360
Query: 1543 ggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttctt 1602
|| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct: 361 ggcttcaactttgacgccaaattgcggagggagagtactgatgttgaggacctgtttatt 420
Query: 1603 gcccatatctccggaatggacaccctggcacgtggcctccgtaacgttgccaagctgatt 1662
||||||||||| || ||||||||| |||| || |||||||| || |||||||||||||||
Sbjct: 421 gcccatatctctgggatggacaccatggcccgcggcctccgcaatgttgccaagctgatt 480
Query: 1663 gaggatggttccctagatgatcttgtccgcaagcggtaccagagctttgatagtgagatt 1722
|||||||||||||| || || ||||| |||||||| |||||||||||||| | |||||||
Sbjct: 481 gaggatggttccctggacgagcttgtacgcaagcgctaccagagctttgacactgagatt 540
Query: 1723 ggtgccttgatcgaggctgggaaaggagactttgagacgctagaaaagaaggt 1775
|||||| |||||||||||| ||| || |||||||| |||||||||||||||||
Sbjct: 541 ggtgccatgatcgaggctgngaagggcgactttgaaacgctagaaaagaaggt 593
>gb|AV915030.1|AV915030 AV915030 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9i06 5', mRNA sequence
Length = 660
Score = 613 bits (309), Expect = e-173
Identities = 556/636 (87%), Gaps = 2/636 (0%)
Strand = Plus / Plus
Query: 685 tggcacacgttccgtggtactggc-gctgatcctttcggtgctcctacaaagacttggcc 743
||||| |||||||| |||||||| | ||||| || ||||| ||||| |||| |||||
Sbjct: 25 tggcatacgttccggggtactggnaggagatccctttggtgcacctacgaagaactggcc 84
Query: 744 ttgggaggacggcacaaattctttggccatggctaagagaagaatgagagctcactttga 803
||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct: 85 ttgggaggatggcaccaattccttggccatggctaagagaagaatgaaagctcacttcga 144
Query: 804 gttcatggagaagttgggagttgacaaatggtgcttccatgacagggatattgccccgga 863
||||||||||||| | |||||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 145 gttcatggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccctga 204
Query: 864 tgggaagactcttgaagaaacaaattctaacttggatgagatagtccagctggcaaagca 923
||| || || || | ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 205 tggcaaaacactcgcggaaacaaatgctaacttggatgagatagttgagctggcaaagca 264
Query: 924 gctgcagggtgagaccaatataaagccattgtggggtactgcacagctctttatgcatcc 983
|| ||| |||||||||||||||||||||| ||||| |||||||| || || ||||||||
Sbjct: 265 actccagagtgagaccaatataaagccattatggggaactgcacaacttttcatgcatcc 324
Query: 984 tcgttacatgcatggcgctgctactagcccagaggttaaagtatatgcttatgcggctgc 1043
||||||||||| || |||||||||||||||||||| || || ||||||||||| |||||
Sbjct: 325 acgttacatgcacggagctgctactagcccagaggtcaaggtgtatgcttatgctgctgc 384
Query: 1044 acaagttaagaaagctttggaggtcactcactacctaggtggtgaaaactatgtgttctg 1103
||||| ||||||||||||||||| |||||||||||||| ||||| ||||| || |||||
Sbjct: 385 tcaagtgaagaaagctttggaggttactcactacctaggcggtgagaactacgtattctg 444
Query: 1104 gggtggaagagagggttaccaaactcttctgaatactgatatgaagagagaacttgacca 1163
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 445 gggtggaagagagggttaccaaactcttctcaataccgatatgaagagggaacttgaaca 504
Query: 1164 tctggctaactttcttcaagctgctgttgactacaagaagaagattggattcaacggaac 1223
| |||||||||||||||||||||||||| || ||||||||||||| || || ||||||||
Sbjct: 505 tttggctaactttcttcaagctgctgttaaccacaagaagaagatcggctttaacggaac 564
Query: 1224 actattgatagagcctaaaccacaggaaccaacaaaacaccagtatgact-gggatgttg 1282
| | |||||||||||||| ||||| ||||||||||| || |||||||||| |||||||||
Sbjct: 565 attgttgatagagcctaagccacaagaaccaacaaagcatcagtatgactggggatgttg 624
Query: 1283 cgactacgtttgcttttctacagaagtacggtctta 1318
| ||||| || |||| |||||||||| |||||||
Sbjct: 625 caactacattctctttcctacagaagtttggtctta 660
>gb|BU987930.1|BU987930 HF16C20r HF Hordeum vulgare subsp. vulgare cDNA clone HF16C20
5-PRIME, mRNA sequence
Length = 663
Score = 593 bits (299), Expect = e-167
Identities = 506/575 (88%)
Strand = Plus / Plus
Query: 1264 cagtatgactgggatgttgcgactacgtttgcttttctacagaagtacggtcttacagga 1323
|||||||||||||||||||| ||||| || |||| |||||||||| |||||||||||
Sbjct: 9 cagtatgactgggatgttgcaactacattctctttcctacagaagtttggtcttacaggg 68
Query: 1324 gagttcaagattaatgttgagtgcaaccatgctactctatctggacacagctgccatcat 1383
|| |||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 69 gaattcaagataaatgttgagtgcaaccatgccactctctctggacatagctgccatcac 128
Query: 1384 gaattggagactgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgat 1443
|| | ||||||||||| ||||||| | |||||||| || ||||||||||||||||||
Sbjct: 129 gagcttgagactgcacgcattaatgacattcttggaaacattgatgcaaacactggtgat 188
Query: 1444 cctcaagttggttgggacacagatcagttcatgacagacattgcagaggctactttggtt 1503
|| ||||||||||||||||| ||| ||||| | ||||||||| |||| ||||| ||| ||
Sbjct: 189 ccacaagttggttgggacacggatgagttccttacagacatttcagaagctaccttgatt 248
Query: 1504 atgtcaagtgtagttaagaatggtggacttgcacctggtggtttcaactttgatgccaaa 1563
|||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||
Sbjct: 249 atgtcaagtgtagttaagaatgatggacttgcgcctggtggcttcaactttgacgccaaa 308
Query: 1564 ttgcggagggaaagtactgatgttgaggacatgtttcttgcccatatctccggaatggac 1623
||||||||||| |||||||||||||||||| ||||| ||||||||||||| || ||||||
Sbjct: 309 ttgcggagggagagtactgatgttgaggacctgtttattgcccatatctctgggatggac 368
Query: 1624 accctggcacgtggcctccgtaacgttgccaagctgattgaggatggttccctagatgat 1683
||| |||| || |||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 369 accatggcccgcggcctccgcaatgttgccaagctgattgaggatggttccctggacgag 428
Query: 1684 cttgtccgcaagcggtaccagagctttgatagtgagattggtgccttgatcgaggctggg 1743
||||| |||||||| |||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 429 cttgtacgcaagcgctaccagagctttgacactgagattggtgccatgatcgaggctggg 488
Query: 1744 aaaggagactttgagacgctagaaaagaaggttctagagtggggtgagcccactgttgca 1803
|| || |||||||| ||||||||||||||||| | |||||||| ||||| || ||| ||
Sbjct: 489 aagggcgactttgaaacgctagaaaagaaggtcttggagtggggcgagccaaccgttcca 548
Query: 1804 tccggcaaacaggaactggcggagattctgttcca 1838
|| ||||||||||||||||| ||||| || |||||
Sbjct: 549 tcgggcaaacaggaactggctgagatgctattcca 583
>gb|BU988741.1|BU988741 HF18I24r HF Hordeum vulgare subsp. vulgare cDNA clone HF18I24
5-PRIME, mRNA sequence
Length = 642
Score = 593 bits (299), Expect = e-167
Identities = 506/575 (88%)
Strand = Plus / Plus
Query: 1264 cagtatgactgggatgttgcgactacgtttgcttttctacagaagtacggtcttacagga 1323
|||||||||||||||||||| ||||| || |||| |||||||||| |||||||||||
Sbjct: 9 cagtatgactgggatgttgcaactacattctctttcctacagaagtttggtcttacaggg 68
Query: 1324 gagttcaagattaatgttgagtgcaaccatgctactctatctggacacagctgccatcat 1383
|| |||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 69 gaattcaagataaatgttgagtgcaaccatgccactctctctggacatagctgccatcac 128
Query: 1384 gaattggagactgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgat 1443
|| | ||||||||||| ||||||| | |||||||| || ||||||||||||||||||
Sbjct: 129 gagcttgagactgcacgcattaatgacattcttggaaacattgatgcaaacactggtgat 188
Query: 1444 cctcaagttggttgggacacagatcagttcatgacagacattgcagaggctactttggtt 1503
|| ||||||||||||||||| ||| ||||| | ||||||||| |||| ||||| ||| ||
Sbjct: 189 ccacaagttggttgggacacggatgagttccttacagacatttcagaagctaccttgatt 248
Query: 1504 atgtcaagtgtagttaagaatggtggacttgcacctggtggtttcaactttgatgccaaa 1563
|||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||
Sbjct: 249 atgtcaagtgtagttaagaatgatggacttgcgcctggtggcttcaactttgacgccaaa 308
Query: 1564 ttgcggagggaaagtactgatgttgaggacatgtttcttgcccatatctccggaatggac 1623
||||||||||| |||||||||||||||||| ||||| ||||||||||||| || ||||||
Sbjct: 309 ttgcggagggagagtactgatgttgaggacctgtttattgcccatatctctgggatggac 368
Query: 1624 accctggcacgtggcctccgtaacgttgccaagctgattgaggatggttccctagatgat 1683
||| |||| || |||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 369 accatggcccgcggcctccgcaatgttgccaagctgattgaggatggttccctggacgag 428
Query: 1684 cttgtccgcaagcggtaccagagctttgatagtgagattggtgccttgatcgaggctggg 1743
||||| |||||||| |||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 429 cttgtacgcaagcgctaccagagctttgacactgagattggtgccatgatcgaggctggg 488
Query: 1744 aaaggagactttgagacgctagaaaagaaggttctagagtggggtgagcccactgttgca 1803
|| || |||||||| ||||||||||||||||| | |||||||| ||||| || ||| ||
Sbjct: 489 aagggcgactttgaaacgctagaaaagaaggtcttggagtggggcgagccaaccgttcca 548
Query: 1804 tccggcaaacaggaactggcggagattctgttcca 1838
|| ||||||||||||||||| ||||| || |||||
Sbjct: 549 tcgggcaaacaggaactggctgagatgctattcca 583
>gb|BF262981.3|BF262981 HV_CEa0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0005H19f, mRNA sequence
Length = 931
Score = 583 bits (294), Expect = e-165
Identities = 520/590 (88%), Gaps = 4/590 (0%)
Strand = Plus / Plus
Query: 1027 tatgcttatgcggctgcacaagttaagaaagctttggaggtcactcactacctaggtggt 1086
||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 16 tatgcttatgctgctgctcaagtgaagaaagctttggaggttactcactacctaggcggt 75
Query: 1087 gaaaactatgtgttctggggtggaagagagggttaccaaactcttctgaatactgatatg 1146
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 76 gagaactacgtattctggggtggaagagagggttaccaaactcttctcaataccgatatg 135
Query: 1147 aagagagaacttgaccatctggctaactttcttcaagctgctgttgactacaagaagaag 1206
||||| |||||||| ||| |||||||||||||||||||||||||| || |||||||||||
Sbjct: 136 aagagggaacttgaacatttggctaactttcttcaagctgctgttaaccacaagaagaag 195
Query: 1207 attggattcaacggaacactattgatagagcctaaaccacaggaaccaacaaaacaccag 1266
|| || || ||||||||| | |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 196 atcggctttaacggaacattgttgatagagcctaagccacaagaaccaacaaagcatcag 255
Query: 1267 tatgactgggatgttgcgactacgtttgcttttctacagaagtacggtcttacaggagag 1326
||||||||||||||||| ||||| || |||| |||||||||| ||||||||||| ||
Sbjct: 256 tatgactgggatgttgcaactacattctctttcctacagaagtttggtcttacaggggaa 315
Query: 1327 ttcaagattaa-tgttgagtgcaaccatgctactctatctggacacagctgccatcatga 1385
|||||||| || |||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 316 ttcaagataaaatgttgagtgcaaccatgctactctctctggacatagctgccatcacga 375
Query: 1386 attggagactgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgatcc 1445
| ||||||||||| ||||||| | |||||||| || ||||||||||||||||||||
Sbjct: 376 gcttgagactgcacgcattaatgacattcttggaaacattgatgcaaacactggtgatcc 435
Query: 1446 tcaagttggttgg-gacacagatcagttcatgacagacattgcagaggctactttggtta 1504
|||||||||| | ||||| ||| ||||| | ||||||||| |||| ||||| ||| |||
Sbjct: 436 acaagttggtttgagacacggatgagttccttacagacatttcagaagctaccttgatta 495
Query: 1505 tgtcaagtgtagttaagaatggtggacttgcacc-tggtggtttcaactttgatgccaaa 1563
||||||||| ||||||||||| ||||||||| || |||||| ||||||||||| ||||||
Sbjct: 496 tgtcaagtggagttaagaatgatggacttgcgccctggtggcttcaactttgacgccaaa 555
Query: 1564 ttgcggagggaaagtactgatgttgaggacatgtttctt-gcccatatct 1612
||||||||||| |||||||||||||||||| || || || ||||||||||
Sbjct: 556 ttgcggagggagagtactgatgttgaggacctggttatttgcccatatct 605
>gb|BU987530.1|BU987530 HF15A03r HF Hordeum vulgare subsp. vulgare cDNA clone HF15A03
5-PRIME, mRNA sequence
Length = 550
Score = 579 bits (292), Expect = e-163
Identities = 479/540 (88%), Gaps = 1/540 (0%)
Strand = Plus / Plus
Query: 1053 gaaagctttggaggtcactcactacctaggtggtgaaaactatgtgttctggggtggaag 1112
||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct: 11 gaaagctttggaggttactcactacctaggcggtgagaactacgtattctggggtggaag 70
Query: 1113 agagggttaccaaactcttctgaatactgatatgaagagagaacttgaccatctggctaa 1172
||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |||||||
Sbjct: 71 agagggttaccaaactcttctcaataccgatatgaagagggaacttgaacatttggctaa 130
Query: 1173 ctttcttcaagctgctgttgactacaagaagaagattggattcaacggaacactattgat 1232
||||||||||||||||||| || ||||||||||||| || || || |||||| | |||||
Sbjct: 131 ctttcttcaagctgctgttaaccacaagaagaagatcggctttaatggaacattgttgat 190
Query: 1233 agagcctaaaccacaggaaccaacaaaa-caccagtatgactgggatgttgcgactacgt 1291
||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| |
Sbjct: 191 agagcctaagccacaagaaccaacaaactcatcagtatgactgggatgttgcaactacat 250
Query: 1292 ttgcttttctacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaacc 1351
| |||| |||||||||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct: 251 tctctttcctacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaacc 310
Query: 1352 atgctactctatctggacacagctgccatcatgaattggagactgcacggattaatgggc 1411
|||| ||||| |||||||| ||||||||||| || | ||||||||||| |||||||
Sbjct: 311 atgccactctctctggacatagctgccatcacgagcttgagactgcacgcattaatgaca 370
Query: 1412 tgcttggaaatatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagt 1471
| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 371 ttcttggaaacattgatgcaaacactggtgatccacaagttggttgggacacggatgagt 430
Query: 1472 tcatgacagacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggac 1531
|| | ||||||||| |||| ||||| ||| |||||||||||||||||||||||| |||||
Sbjct: 431 tccttacagacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggac 490
Query: 1532 ttgcacctggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgagg 1591
|||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 491 ttgcgcctggtggcttcaactttgacgccaaattgcggagggagagtactgatgttgagg 550
>gb|AV931911.1|AV931911 AV931911 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26l01 3', mRNA sequence
Length = 738
Score = 569 bits (287), Expect = e-160
Identities = 476/539 (88%)
Strand = Plus / Minus
Query: 1300 ctacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctact 1359
|||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 734 ctacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgctact 675
Query: 1360 ctatctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttgga 1419
|| |||||||| ||||||||||| || | ||||||||||| ||||||| | ||||||
Sbjct: 674 ctctctggacatagctgccatcacgagcttgagactgcacgcattaatgacattcttgga 615
Query: 1420 aatatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgaca 1479
|| || |||||||||||||||||||| ||||||||||||||||| ||| ||||| | |||
Sbjct: 614 aacattgatgcaaacactggtgatccacaagttggttgggacacggatgagttccttaca 555
Query: 1480 gacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacct 1539
|||||| |||| ||||| ||| |||||||||||||||||||||||| ||||||||| |||
Sbjct: 554 gacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcct 495
Query: 1540 ggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatgttt 1599
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 494 ggtggcttcaactttgatgccaaattgcggagggagagtactgatgttgaggacctgttt 435
Query: 1600 cttgcccatatctccggaatggacaccctggcacgtggcctccgtaacgttgccaagctg 1659
||||||||||||| || ||||||||| |||| || |||||||| || ||||||||||||
Sbjct: 434 attgcccatatctctgggatggacaccatggcccgcggcctccgcaatgttgccaagctg 375
Query: 1660 attgaggatggttccctagatgatcttgtccgcaagcggtaccagagctttgatagtgag 1719
||||||||||||||||| || || ||||| ||||| || |||||||||||||| | ||||
Sbjct: 374 attgaggatggttccctggacgagcttgtacgcaaacgctaccagagctttgacactgag 315
Query: 1720 attggtgccttgatcgaggctgggaaaggagactttgagacgctagaaaagaaggttcta 1779
||||||||| |||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 314 attggtgccatgatcgaggctgggaagggcgactttgaaacgctagaaaagaaggtcttg 255
Query: 1780 gagtggggtgagcccactgttgcatccggcaaacaggaactggcggagattctgttcca 1838
|||||||| ||||| || ||| |||| |||||||||||| |||| ||||| ||||||||
Sbjct: 254 gagtggggcgagccaaccgttccatcgggcaaacaggaattggctgagatgctgttcca 196
>gb|CD664048.1|CD664048 UCRHV18_07cb11_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_07cb11, mRNA sequence
Length = 806
Score = 557 bits (281), Expect = e-157
Identities = 494/565 (87%)
Strand = Plus / Minus
Query: 1274 gggatgttgcgactacgtttgcttttctacagaagtacggtcttacaggagagttcaaga 1333
|||||||||| | ||| || |||| |||||||||| ||||||||||| || |||||||
Sbjct: 806 gggatgttgcaaatacattctctttcctacagaagtttggtcttacaggggaattcaaga 747
Query: 1334 ttaatgttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggaga 1393
| ||||| |||||||||||||||||||| |||||||| ||||||||||| || | ||||
Sbjct: 746 taaatgtggagtgcaaccatgctactctctctggacatagctgccatcacgagcttgaga 687
Query: 1394 ctgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttg 1453
||||||| ||||||| | |||||||| || |||||||||||||||||||| |||||||
Sbjct: 686 ctgcacgcattaatgacattcttggaaacattgatgcaaacactggtgatccacaagttg 627
Query: 1454 gttgggacacagatcagttcatgacagacattgcagaggctactttggttatgtcaagtg 1513
|||||||||| ||| ||||| | ||||||||| |||| ||||| ||| ||||||||||||
Sbjct: 626 gttgggacacggatgagttccttacagacatttcagaagctaccttgattatgtcaagtg 567
Query: 1514 tagttaagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcggaggg 1573
|||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||| |
Sbjct: 566 tagttaagaatgatggacttgcgcctggtggcttcaactttgacgccaaattgcggagag 507
Query: 1574 aaagtactgatgttgaggacatgtttcttgcccatatctccggaatggacaccctggcac 1633
| |||||||||||||||||| ||||| ||||||||||||| || ||||||||| |||| |
Sbjct: 506 agagtactgatgttgaggacctgtttattgcccatatctctgggatggacaccatggccc 447
Query: 1634 gtggcctccgtaacgttgccaagctgattgaggatggttccctagatgatcttgtccgca 1693
| |||||||| || ||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct: 446 gcggcctccgcaatgttgccaagctgattgaggatggttccctggacgagcttgtacgca 387
Query: 1694 agcggtaccagagctttgatagtgagattggtgccttgatcgaggctgggaaaggagact 1753
|||| |||||||||||||| | ||||||||||||| |||||||||||||||| || ||||
Sbjct: 386 agcgctaccagagctttgacactgagattggtgccatgatcgaggctgggaagggcgact 327
Query: 1754 ttgagacgctagaaaagaaggttctagagtggggtgagcccactgttgcatccggcaaac 1813
|||| ||||||||||||||||| | |||||||| ||||| || ||| |||| |||||||
Sbjct: 326 ttgaaacgctagaaaagaaggtcttggagtggggcgagccaaccgttccatcgggcaaac 267
Query: 1814 aggaactggcggagattctgttcca 1838
|||||||||| ||||| || |||||
Sbjct: 266 aggaactggctgagatgctattcca 242
>gb|AV920160.1|AV920160 AV920160 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9i06 3', mRNA sequence
Length = 716
Score = 547 bits (276), Expect = e-154
Identities = 453/512 (88%)
Strand = Plus / Minus
Query: 1327 ttcaagattaatgttgagtgcaaccatgctactctatctggacacagctgccatcatgaa 1386
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 712 ttcaagataaatgttgagtgcaaccatgctactctctctggacatagctgccatcacgag 653
Query: 1387 ttggagactgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgatcct 1446
| ||||||||||| ||||||| | |||||||| || ||||||||||||||||||||
Sbjct: 652 cttgagactgcacgcattaatgacattcttggaaacattgatgcaaacactggtgatcca 593
Query: 1447 caagttggttgggacacagatcagttcatgacagacattgcagaggctactttggttatg 1506
||||||||||||||||| ||| ||||| | ||||||||| |||| ||||| ||| |||||
Sbjct: 592 caagttggttgggacacggatgagttccttacagacatttcagaagctaccttgattatg 533
Query: 1507 tcaagtgtagttaagaatggtggacttgcacctggtggtttcaactttgatgccaaattg 1566
||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 532 tcaagtgtagttaagaatgatggacttgcgcctggtggcttcaactttgatgccaaattg 473
Query: 1567 cggagggaaagtactgatgttgaggacatgtttcttgcccatatctccggaatggacacc 1626
|||||||| |||||||||||||||||| ||||| ||||||||||||| || |||||||||
Sbjct: 472 cggagggagagtactgatgttgaggacctgtttattgcccatatctctgggatggacacc 413
Query: 1627 ctggcacgtggcctccgtaacgttgccaagctgattgaggatggttccctagatgatctt 1686
|||| || |||||||| || ||||||||||||||||||||||||||||| || || |||
Sbjct: 412 atggcccgcggcctccgcaatgttgccaagctgattgaggatggttccctggacgagctt 353
Query: 1687 gtccgcaagcggtaccagagctttgatagtgagattggtgccttgatcgaggctgggaaa 1746
|| ||||| || |||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct: 352 gtacgcaaacgctaccagagctttgacactgagattggtgccatgatcgaggctgggaag 293
Query: 1747 ggagactttgagacgctagaaaagaaggttctagagtggggtgagcccactgttgcatcc 1806
|| |||||||| ||||||||||||||||| | |||||||| ||||| || ||| ||||
Sbjct: 292 ggcgactttgaaacgctagaaaagaaggtcttggagtggggcgagccaaccgttccatcg 233
Query: 1807 ggcaaacaggaactggcggagattctgttcca 1838
|||||||||||| |||| ||||| ||||||||
Sbjct: 232 ggcaaacaggaattggctgagatgctgttcca 201
>gb|BU988064.1|BU988064 HF16J01r HF Hordeum vulgare subsp. vulgare cDNA clone HF16J01
5-PRIME, mRNA sequence
Length = 591
Score = 539 bits (272), Expect = e-151
Identities = 500/576 (86%)
Strand = Plus / Plus
Query: 571 atcaagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggag 630
||||| ||||||||||| || |||||||| || ||| |||| |||||||||||| ||||
Sbjct: 16 atcaactatgagggtcctaccagcaagaagccgctttcttacaagtggtataacgcggag 75
Query: 631 gaagtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcac 690
|||||||| ||||| ||||| |||||||||||| |||| ||||| || ||||| |||||
Sbjct: 76 gaagtgatcctcggaaagaaaatgaaggattggttgcggttcagcgtggcgttttggcat 135
Query: 691 acgttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggag 750
|||||||| |||||||| | ||||| || ||||| ||||| |||| ||||||||||||
Sbjct: 136 acgttccggggtactggaggagatccctttggtgcacctacgaagaactggccttgggag 195
Query: 751 gacggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttcatg 810
|| ||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 196 gatggcaccaattccttggccatggctaagagaagaatgaaagctcacttcgagttcatg 255
Query: 811 gagaagttgggagttgacaaatggtgcttccatgacagggatattgccccggatgggaag 870
|||||| | |||||||| | |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 256 gagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccctgatggcaaa 315
Query: 871 actcttgaagaaacaaattctaacttggatgagatagtccagctggcaaagcagctgcag 930
|| || | ||||||||| ||||||||||||||||||| ||||||||||||| || |||
Sbjct: 316 acactcgcggaaacaaatgctaacttggatgagatagttgagctggcaaagcaactccag 375
Query: 931 ggtgagaccaatataaagccattgtggggtactgcacagctctttatgcatcctcgttac 990
|||||||||||||||||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 376 agtgagaccaatataaagccattatggggaactgcacaacttttcatgcatccacgttac 435
Query: 991 atgcatggcgctgctactagcccagaggttaaagtatatgcttatgcggctgcacaagtt 1050
||||| || |||||||||||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 436 atgcacggagctgctactagcccagaggtcaaggtgtatgcttatgctgctgctcaagtg 495
Query: 1051 aagaaagctttggaggtcactcactacctaggtggtgaaaactatgtgttctggggtgga 1110
| |||||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||
Sbjct: 496 actaaagctttggaggttactcactacctaggcggtgagaactacgtattctggggtgga 555
Query: 1111 agagagggttaccaaactcttctgaatactgatatg 1146
||||||||||||||||||||||| ||||| ||||||
Sbjct: 556 agagagggttaccaaactcttctcaataccgatatg 591
>gb|BF629864.2|BF629864 HVSMEb0007C02f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007C02f, mRNA sequence
Length = 501
Score = 533 bits (269), Expect = e-150
Identities = 436/492 (88%)
Strand = Plus / Plus
Query: 766 ttggccatggctaagagaagaatgagagctcactttgagttcatggagaagttgggagtt 825
||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||
Sbjct: 6 ttggccatggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagtt 65
Query: 826 gacaaatggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaaca 885
|| | |||||||||||||||||||| || ||||| ||||| || || || | ||||||
Sbjct: 66 gaaaggtggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaaca 125
Query: 886 aattctaacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatata 945
||| ||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||
Sbjct: 126 aatgctaacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatata 185
Query: 946 aagccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgct 1005
|||||||| ||||| |||||||| || || |||||||| ||||||||||| || ||||||
Sbjct: 186 aagccattatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgct 245
Query: 1006 actagcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggag 1065
|||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 246 actagcccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggag 305
Query: 1066 gtcactcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaa 1125
|| |||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 306 gttactcactacctaggcggtgagaactacgtattctggggtggaagagagggttaccaa 365
Query: 1126 actcttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagct 1185
|||||||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 366 actcttctcaataccgatatgaagagggaacttgaacatttggctaactttcttcaagct 425
Query: 1186 gctgttgactacaagaagaagattggattcaacggaacactattgatagagcctaaacca 1245
|||||| || ||||||||||||| || | ||||||||| | |||||||||||||| |||
Sbjct: 426 gctgttaaccacaagaagaagatcggctntaacggaacattgttgatagagcctaagcca 485
Query: 1246 caggaaccaaca 1257
|| |||||||||
Sbjct: 486 caagaaccaaca 497
>gb|AV908957.1|AV908957 AV908957 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak11b03 5', mRNA sequence
Length = 602
Score = 527 bits (266), Expect = e-148
Identities = 503/582 (86%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||| ||
Sbjct: 21 gatgattgggagggcgagttcttccccggcattgacaagatcaactatgagggtcctacc 80
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 81 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 140
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 141 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 200
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 201 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 260
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 261 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 320
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 321 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 380
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 381 aacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagcca 440
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagc 1011
|| ||||| |||||||| || || |||||||| ||||||||||| || ||||||||||||
Sbjct: 441 ttatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctactagc 500
Query: 1012 ccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtcact 1071
|||||||| || || ||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 501 ccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttact 560
Query: 1072 cactacctaggtggtgaaaactatgtgttctggggtggaaga 1113
||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 561 cactacctaggcggtgagaactacgtattctggggtggaaga 602
>gb|CA026543.1|CA026543 HZ56D11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56D11
5-PRIME, mRNA sequence
Length = 495
Score = 519 bits (262), Expect = e-145
Identities = 436/494 (88%)
Strand = Plus / Plus
Query: 1063 gaggtcactcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttac 1122
||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct: 1 gaggttactcactacctaggcggtgagaactacgtattctggggtggaagagagggttac 60
Query: 1123 caaactcttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaa 1182
||||||||||| ||||| ||||||||||| |||||||| ||| |||||||||||||||||
Sbjct: 61 caaactcttctcaataccgatatgaagagggaacttgaacatttggctaactttcttcaa 120
Query: 1183 gctgctgttgactacaagaagaagattggattcaacggaacactattgatagagcctaaa 1242
||||||||| || ||||||||||||| || || || |||||| | ||||||||||||||
Sbjct: 121 gctgctgttaaccacaagaagaagatcggctttaatggaacattgttgatagagcctaag 180
Query: 1243 ccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgcttttcta 1302
||||| ||||||||||| || |||||||||||||||||||| ||||| || |||| |||
Sbjct: 181 ccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacattctctttccta 240
Query: 1303 cagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctactcta 1362
||||||| ||||||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct: 241 cagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgccactctc 300
Query: 1363 tctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttggaaat 1422
|||||||| ||||||||||| || | ||||||||||| ||||||| | ||||||||
Sbjct: 301 tctggacatagctgccatcacgagcttgagactgcacgcattaatgacattcttggaaac 360
Query: 1423 atcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgacagac 1482
|| |||||||||||||||||||| ||||||||||||||||| ||| ||||| | ||||||
Sbjct: 361 attgatgcaaacactggtgatccacaagttggttgggacacggatgagttccttacagac 420
Query: 1483 attgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggt 1542
||| |||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 421 atttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctggt 480
Query: 1543 ggtttcaactttga 1556
|| |||||||||||
Sbjct: 481 ggcttcaactttga 494
>gb|CA024235.1|CA024235 HZ48L22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48L22
5-PRIME, mRNA sequence
Length = 498
Score = 515 bits (260), Expect = e-144
Identities = 431/488 (88%)
Strand = Plus / Plus
Query: 1121 accaaactcttctgaatactgatatgaagagagaacttgaccatctggctaactttcttc 1180
||||||||||||| ||||| ||||||||||| |||||||| ||| |||||||||||||||
Sbjct: 11 accaaactcttctcaataccgatatgaagagggaacttgaacatttggctaactttcttc 70
Query: 1181 aagctgctgttgactacaagaagaagattggattcaacggaacactattgatagagccta 1240
||||||||||| || ||||||||||||| || || || |||||| | |||||||||||||
Sbjct: 71 aagctgctgttaaccacaagaagaagatcggctttaatggaacattgttgatagagccta 130
Query: 1241 aaccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgcttttc 1300
| ||||| ||||||||||| || |||||||||||||||||||| ||||| || |||| |
Sbjct: 131 agccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacattctctttcc 190
Query: 1301 tacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctactc 1360
||||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||
Sbjct: 191 tacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgccactc 250
Query: 1361 tatctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttggaa 1420
| |||||||| ||||||||||| || | ||||||||||| ||||||| | |||||||
Sbjct: 251 tctctggacatagctgccatcacgagcttgagactgcacgcattaatgacattcttggaa 310
Query: 1421 atatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgacag 1480
| || |||||||||||||||||||| ||||||||||||||||| ||| ||||| | ||||
Sbjct: 311 acattgatgcaaacactggtgatccacaagttggttgggacacggatgagttccttacag 370
Query: 1481 acattgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacctg 1540
||||| |||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct: 371 acatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctg 430
Query: 1541 gtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttc 1600
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 431 gtggcttcaactttgacgccaaattgcggagggagagtactgatgttgaggacctgttta 490
Query: 1601 ttgcccat 1608
||||||||
Sbjct: 491 ttgcccat 498
>gb|CA009523.1|CA009523 HU14F23r HU Hordeum vulgare subsp. vulgare cDNA clone HU14F23
5-PRIME, mRNA sequence
Length = 592
Score = 498 bits (251), Expect = e-139
Identities = 473/547 (86%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 46 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 105
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 106 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 165
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 166 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 225
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 226 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 285
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 286 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 345
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 346 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 405
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 406 aacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagcca 465
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagc 1011
|| ||||| |||||||| || || |||||||| ||||||||||| || ||||||||||||
Sbjct: 466 ttatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctactagc 525
Query: 1012 ccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtcact 1071
|||||||| || || ||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 526 ccagaggtcaaggtgtatgcttatgctgctgctcaagtgaagaaagctttggaggttact 585
Query: 1072 cactacc 1078
|||||||
Sbjct: 586 cactacc 592
>gb|BJ468655.1|BJ468655 BJ468655 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l12 3', mRNA sequence
Length = 649
Score = 482 bits (243), Expect = e-134
Identities = 411/467 (88%)
Strand = Plus / Minus
Query: 1372 agctgccatcatgaattggagactgcacggattaatgggctgcttggaaatatcgatgca 1431
||||||||||| || | ||||||||||| ||||||| | |||||||| || ||||||
Sbjct: 645 agctgccatcacgagcttgagactgcacgcattaatgacattcttggaaacattgatgca 586
Query: 1432 aacactggtgatcctcaagttggttgggacacagatcagttcatgacagacattgcagag 1491
|||||||||||||| ||||||||||||||||| ||| ||||| | ||||||||| ||||
Sbjct: 585 aacactggtgatccacaagttggttgggacacggatgagttccttacagacatttcagaa 526
Query: 1492 gctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggtggtttcaac 1551
||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 525 gctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctggtggcttcaac 466
Query: 1552 tttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttcttgcccatatc 1611
||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct: 465 tttgatgccaaattgcggagggagagtactgatgttgaggacctgtttattgcccatatc 406
Query: 1612 tccggaatggacaccctggcacgtggcctccgtaacgttgccaagctgattgaggatggt 1671
|| || ||||||||| |||| || |||||||| || ||||||||||||||||||||||||
Sbjct: 405 tctgggatggacaccatggcccgcggcctccgcaatgttgccaagctgattgaggatggt 346
Query: 1672 tccctagatgatcttgtccgcaagcggtaccagagctttgatagtgagattggtgccttg 1731
||||| || || ||||| ||||| || |||||||||||||| | ||||||||||||| ||
Sbjct: 345 tccctggacgagcttgtacgcaaacgctaccagagctttgacactgagattggtgccatg 286
Query: 1732 atcgaggctgggaaaggagactttgagacgctagaaaagaaggttctagagtggggtgag 1791
|||||||||||||| || |||||||| ||||||||||||||||| | |||||||| |||
Sbjct: 285 atcgaggctgggaagggcgactttgaaacgctagaaaagaaggtcttggagtggggcgag 226
Query: 1792 cccactgttgcatccggcaaacaggaactggcggagattctgttcca 1838
|| || ||| |||| |||||||||||| |||| ||||| ||||||||
Sbjct: 225 ccaaccgttccatcgggcaaacaggaattggctgagatgctgttcca 179
>gb|BQ760785.1|BQ760785 EBro03_SQ003_H12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_H12 5', mRNA sequence
Length = 625
Score = 478 bits (241), Expect = e-133
Identities = 397/449 (88%)
Strand = Plus / Plus
Query: 1390 gagactgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaa 1449
||||||||||| ||||||| | |||||||| || |||||||||||||||||||| |||
Sbjct: 8 gagactgcacgcattaatgacattcttggaaacattgatgcaaacactggtgatccacaa 67
Query: 1450 gttggttgggacacagatcagttcatgacagacattgcagaggctactttggttatgtca 1509
|||||||||||||| ||| ||||| | ||||||||| |||| ||||| ||| ||||||||
Sbjct: 68 gttggttgggacacggatgagttccttacagacatttcagaagctaccttgattatgtca 127
Query: 1510 agtgtagttaagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcgg 1569
|||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 128 agtgtagttaagaatgatggacttgcgcctggtggcttcaactttgacgccaaattgcgg 187
Query: 1570 agggaaagtactgatgttgaggacatgtttcttgcccatatctccggaatggacaccctg 1629
||||| |||||||||||||||||| ||||| ||||||||||||| || ||||||||| ||
Sbjct: 188 agggagagtactgatgttgaggacctgtttattgcccatatctctgggatggacaccatg 247
Query: 1630 gcacgtggcctccgtaacgttgccaagctgattgaggatggttccctagatgatcttgtc 1689
|| || |||||||| || ||||||||||||||||||||||||||||| || || |||||
Sbjct: 248 gcccgcggcctccgcaatgttgccaagctgattgaggatggttccctggacgagcttgta 307
Query: 1690 cgcaagcggtaccagagctttgatagtgagattggtgccttgatcgaggctgggaaagga 1749
|||||||| |||||||||||||| | ||||||||||||| |||||||||||||||| ||
Sbjct: 308 cgcaagcgctaccagagctttgacactgagattggtgccatgatcgaggctgggaagggc 367
Query: 1750 gactttgagacgctagaaaagaaggttctagagtggggtgagcccactgttgcatccggc 1809
|||||||| ||||||||||||||||| | |||||||| ||||| || ||| |||| |||
Sbjct: 368 gactttgaaacgctagaaaagaaggtcttggagtggggcgagccaaccgttccatcgggc 427
Query: 1810 aaacaggaactggcggagattctgttcca 1838
|||||||||||||| ||||| || |||||
Sbjct: 428 aaacaggaactggctgagatgctattcca 456
>gb|CA021472.1|CA021472 HZ40D08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40D08
5-PRIME, mRNA sequence
Length = 670
Score = 478 bits (241), Expect = e-133
Identities = 397/449 (88%)
Strand = Plus / Plus
Query: 1390 gagactgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaa 1449
||||||||||| ||||||| | |||||||| || |||||||||||||||||||| |||
Sbjct: 1 gagactgcacgcattaatgacattcttggaaacattgatgcaaacactggtgatccacaa 60
Query: 1450 gttggttgggacacagatcagttcatgacagacattgcagaggctactttggttatgtca 1509
|||||||||||||| ||| ||||| | ||||||||| |||| ||||| ||| ||||||||
Sbjct: 61 gttggttgggacacggatgagttccttacagacatttcagaagctaccttgattatgtca 120
Query: 1510 agtgtagttaagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcgg 1569
|||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 121 agtgtagttaagaatgatggacttgcgcctggtggcttcaactttgacgccaaattgcgg 180
Query: 1570 agggaaagtactgatgttgaggacatgtttcttgcccatatctccggaatggacaccctg 1629
||||| |||||||||||||||||| ||||| ||||||||||||| || ||||||||| ||
Sbjct: 181 agggagagtactgatgttgaggacctgtttattgcccatatctctgggatggacaccatg 240
Query: 1630 gcacgtggcctccgtaacgttgccaagctgattgaggatggttccctagatgatcttgtc 1689
|| || |||||||| || ||||||||||||||||||||||||||||| || || |||||
Sbjct: 241 gcccgcggcctccgcaatgttgccaagctgattgaggatggttccctggacgagcttgta 300
Query: 1690 cgcaagcggtaccagagctttgatagtgagattggtgccttgatcgaggctgggaaagga 1749
|||||||| |||||||||||||| | ||||||||||||| |||||||||||||||| ||
Sbjct: 301 cgcaagcgctaccagagctttgacactgagattggtgccatgatcgaggctgggaagggc 360
Query: 1750 gactttgagacgctagaaaagaaggttctagagtggggtgagcccactgttgcatccggc 1809
|||||||| ||||||||||||||||| | |||||||| ||||| || ||| |||| |||
Sbjct: 361 gactttgaaacgctagaaaagaaggtcttggagtggggcgagccaaccgttccatcgggc 420
Query: 1810 aaacaggaactggcggagattctgttcca 1838
|||||||||||||| ||||| || |||||
Sbjct: 421 aaacaggaactggctgagatgctattcca 449
>gb|AV910842.1|AV910842 AV910842 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak11b03 3', mRNA sequence
Length = 669
Score = 474 bits (239), Expect = e-132
Identities = 410/467 (87%)
Strand = Plus / Minus
Query: 1372 agctgccatcatgaattggagactgcacggattaatgggctgcttggaaatatcgatgca 1431
||||||||||| || | ||||||||||| ||||||| | |||||||| || ||||||
Sbjct: 666 agctgccatcacgagcttgagactgcacgcattaatgacattcttggaaacattgatgca 607
Query: 1432 aacactggtgatcctcaagttggttgggacacagatcagttcatgacagacattgcagag 1491
|||||||||||||| ||||||||||||||||| ||| ||||| | ||||||||| ||||
Sbjct: 606 aacactggtgatccacaagttggttgggacacggatgagttccttacagacatttcagaa 547
Query: 1492 gctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggtggtttcaac 1551
||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 546 gctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctggtggcttcaac 487
Query: 1552 tttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttcttgcccatatc 1611
||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct: 486 tttgacgccaaattgcggagggagagtactgatgttgaggacctgtttattgcccatatc 427
Query: 1612 tccggaatggacaccctggcacgtggcctccgtaacgttgccaagctgattgaggatggt 1671
|| || ||||||||| |||| || |||||||| || ||||||||||||||||||||||||
Sbjct: 426 tctgggatggacaccatggcccgcggcctccgcaatgttgccaagctgattgaggatggt 367
Query: 1672 tccctagatgatcttgtccgcaagcggtaccagagctttgatagtgagattggtgccttg 1731
||||| || || ||||| ||||| || |||||||||||||| | ||||||||||||| ||
Sbjct: 366 tccctggacgagcttgtacgcaaacgctaccagagctttgacactgagattggtgccatg 307
Query: 1732 atcgaggctgggaaaggagactttgagacgctagaaaagaaggttctagagtggggtgag 1791
|||||||||||||| || |||||||| ||||||||||||||||| | |||||||| |||
Sbjct: 306 atcgaggctgggaagggcgactttgaaacgctagaaaagaaggtcttggagtggggcgag 247
Query: 1792 cccactgttgcatccggcaaacaggaactggcggagattctgttcca 1838
|| || ||| |||| |||||||||||| |||| ||||| ||||||||
Sbjct: 246 ccaaccgttccatcgggcaaacaggaattggctgagatgctgttcca 200
>gb|AV919745.1|AV919745 AV919745 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7g12 3', mRNA sequence
Length = 698
Score = 462 bits (233), Expect = e-128
Identities = 396/449 (88%), Gaps = 1/449 (0%)
Strand = Plus / Minus
Query: 1391 agactgcacggattaatgggctgcttggaaatatcgatgcaaacactgg-tgatcctcaa 1449
|||||||||| ||||||| | |||||||| || |||||||||||||| |||||| |||
Sbjct: 675 agactgcacgcattaatgacattcttggaaacattgatgcaaacactgggtgatccacaa 616
Query: 1450 gttggttgggacacagatcagttcatgacagacattgcagaggctactttggttatgtca 1509
|||||||||||||| ||| ||||| | ||||||||| |||| ||||| ||| ||||||||
Sbjct: 615 gttggttgggacacggatgagttccttacagacatttcagaagctaccttgattatgtca 556
Query: 1510 agtgtagttaagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcgg 1569
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 555 agtgtagttaagaatgatggacttgcgcctggtggcttcaactttgatgccaaattgcgg 496
Query: 1570 agggaaagtactgatgttgaggacatgtttcttgcccatatctccggaatggacaccctg 1629
||||| |||||||||||||||||| ||||| ||||||||||||| || ||||||||| ||
Sbjct: 495 agggagagtactgatgttgaggacctgtttattgcccatatctctgggatggacaccatg 436
Query: 1630 gcacgtggcctccgtaacgttgccaagctgattgaggatggttccctagatgatcttgtc 1689
|| || |||||||| || ||||||||||||||||||||||||||||| || || |||||
Sbjct: 435 gcccgcggcctccgcaatgttgccaagctgattgaggatggttccctggacgagcttgta 376
Query: 1690 cgcaagcggtaccagagctttgatagtgagattggtgccttgatcgaggctgggaaagga 1749
||||| || |||||||||||||| | ||||||||||||| |||||||||||||||| ||
Sbjct: 375 cgcaaacgctaccagagctttgacactgagattggtgccatgatcgaggctgggaagggc 316
Query: 1750 gactttgagacgctagaaaagaaggttctagagtggggtgagcccactgttgcatccggc 1809
|||||||| ||||||||||||||||| | |||||||| ||||| || ||| |||| |||
Sbjct: 315 gactttgaaacgctagaaaagaaggtcttggagtggggcgagccaaccgttccatcgggc 256
Query: 1810 aaacaggaactggcggagattctgttcca 1838
||||||||| |||| ||||| ||||||||
Sbjct: 255 aaacaggaattggctgagatgctgttcca 227
>gb|BQ756913.1|BQ756913 EBem10_SQ002_C11_R embryo, 2 Day germination, no treatment, cv Optic,
EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_C11 5', mRNA sequence
Length = 423
Score = 456 bits (230), Expect = e-126
Identities = 365/410 (89%)
Strand = Plus / Plus
Query: 973 tttatgcatcctcgttacatgcatggcgctgctactagcccagaggttaaagtatatgct 1032
||||||||||| ||||||||||| || |||||||||||||||||||| || || ||||||
Sbjct: 4 tttatgcatccacgttacatgcacggagctgctactagcccagaggtcaaggtgtatgct 63
Query: 1033 tatgcggctgcacaagttaagaaagctttggaggtcactcactacctaggtggtgaaaac 1092
||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 64 tatgctgctgctcaagtgaagaaagctttggaggttactcactacctaggcggtgagaac 123
Query: 1093 tatgtgttctggggtggaagagagggttaccaaactcttctgaatactgatatgaagaga 1152
|| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 124 tacgtattctggggtggaagagagggttaccaaactcttctcaataccgatatgaagagg 183
Query: 1153 gaacttgaccatctggctaactttcttcaagctgctgttgactacaagaagaagattgga 1212
|||||||| ||| |||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct: 184 gaacttgaacatttggctaactttcttcaagctgctgttaaccacaagaagaagatcggc 243
Query: 1213 ttcaacggaacactattgatagagcctaaaccacaggaaccaacaaaacaccagtatgac 1272
|| || |||||| | |||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct: 244 tttaatggaacattgttgatagagcctaagccacaagaaccaacaaagcatcagtatgac 303
Query: 1273 tgggatgttgcgactacgtttgcttttctacagaagtacggtcttacaggagagttcaag 1332
||||||||||| ||||| || |||| |||||||||| ||||||||||| || | ||||
Sbjct: 304 tgggatgttgcaactacattctctttcctacagaagtttggtcttacaggggaatccaag 363
Query: 1333 attaatgttgagtgcaaccatgctactctatctggacacagctgccatca 1382
|| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 364 ataaatgttgagtgcaaccatgccactctctctggacatagctgccatca 413
>gb|BF254156.3|BF254156 HVSMEf0003C21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003C21f, mRNA sequence
Length = 524
Score = 454 bits (229), Expect = e-126
Identities = 376/425 (88%)
Strand = Plus / Plus
Query: 1414 cttggaaatatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttc 1473
|||||||| || |||||||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct: 17 cttggaaacattgatgcaaacactggtgatccacaagttggttgggacacggatgagttc 76
Query: 1474 atgacagacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggactt 1533
| ||||||||| || | ||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 77 cttacagacatttcaaaagctaccttgattatgtcaagtgtagttaagaatgatggactt 136
Query: 1534 gcacctggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggac 1593
|| |||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 137 gcgcctggtggcttcaactttgacgccaaattgcggagagagagtactgatgttgaggac 196
Query: 1594 atgtttcttgcccatatctccggaatggacaccctggcacgtggcctccgtaacgttgcc 1653
||||| ||||||||||||| || ||||||||| |||| || |||||||| || ||||||
Sbjct: 197 ctgtttattgcccatatctctgggatggacaccatggcccgcggcctccgcaatgttgcc 256
Query: 1654 aagctgattgaggatggttccctagatgatcttgtccgcaagcggtaccagagctttgat 1713
||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 257 aagctgattgaggatggttccctggacgagcttgtacgcaagcgctaccagagctttgac 316
Query: 1714 agtgagattggtgccttgatcgaggctgggaaaggagactttgagacgctagaaaagaag 1773
| ||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 317 actgagattggtgccatgatcgaggctgggaagggcgactttgaaacgctagaaaagaag 376
Query: 1774 gttctagagtggggtgagcccactgttgcatccggcaaacaggaactggcggagattctg 1833
|| | |||||||| ||||| || ||| |||| ||||||||||||||||| ||||| ||
Sbjct: 377 gtcttggagtggggcgagccaaccgttccatcgggcaaacaggaactggctgagatgcta 436
Query: 1834 ttcca 1838
|||||
Sbjct: 437 ttcca 441
>gb|BQ660999.1|BQ660999 HM01H06w HM Hordeum vulgare subsp. vulgare cDNA clone HM01H06
3-PRIME, mRNA sequence
Length = 604
Score = 454 bits (229), Expect = e-126
Identities = 367/413 (88%)
Strand = Plus / Minus
Query: 1426 gatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgacagacatt 1485
|||||||||||||||||||| ||||||||||||||||| ||| ||||| | ||||||||
Sbjct: 604 gatgcaaacactggtgatccacaagttggttgggacacggatgagttcctaccagacatt 545
Query: 1486 gcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggtggt 1545
|||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 544 tcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcgcctggtggc 485
Query: 1546 ttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttcttgcc 1605
||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct: 484 ttcaactttgacgccaaattgcggagggagagtactgatgttgaggacctgtttattgcc 425
Query: 1606 catatctccggaatggacaccctggcacgtggcctccgtaacgttgccaagctgattgag 1665
|||||||| || ||||||||| |||| || |||||||| || ||||||||||||||||||
Sbjct: 424 catatctctgggatggacaccatggcccgcggcctccgcaatgttgccaagctgattgag 365
Query: 1666 gatggttccctagatgatcttgtccgcaagcggtaccagagctttgatagtgagattggt 1725
||||||||||| || || ||||| |||||||| |||||||||||||| | ||||||||||
Sbjct: 364 gatggttccctggacgagcttgtacgcaagcgctaccagagctttgacactgagattggt 305
Query: 1726 gccttgatcgaggctgggaaaggagactttgagacgctagaaaagaaggttctagagtgg 1785
||| |||||||||||||||| || |||||||| ||||||||||||||||| | ||||||
Sbjct: 304 gccatgatcgaggctgggaagggcgactttgaaacgctagaaaagaaggtcttggagtgg 245
Query: 1786 ggtgagcccactgttgcatccggcaaacaggaactggcggagattctgttcca 1838
|| ||||| || ||| |||| ||||||||||||||||| ||||| || |||||
Sbjct: 244 ggcgagccaaccgttccatcgggcaaacaggaactggctgagatgctattcca 192
>gb|BU983030.1|BU983030 HA28F12r HA Hordeum vulgare subsp. vulgare cDNA clone HA28F12
5-PRIME, mRNA sequence
Length = 525
Score = 424 bits (214), Expect = e-117
Identities = 434/506 (85%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 571 atcaagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggag 630
||||| ||||||||||| || |||||||| || ||| |||| |||||||||||| ||||
Sbjct: 20 atcaactatgagggtcctaccagcaagaagccgctttcttacaagtggtataacgcggag 79
Query: 631 gaagtgattctcggtaagaagatgaaggattggatgcgcttcagtgttg-cgttctggca 689
|||||||| ||||| ||||| |||||||||||| |||| |||| | || |||| |||||
Sbjct: 80 gaagtgatcctcggaaagaaaatgaaggattggttgcggttcatttttttcgttttggca 139
Query: 690 cacgttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttggga 749
|||||||| |||||||| | ||||| || | ||| ||||| |||| |||||||||||
Sbjct: 140 tacgttccggggtactggaggagatccctttgttgcacctacgaagaactggccttggga 199
Query: 750 ggacggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttcat 809
||| ||||| ||||| |||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct: 200 ggatggcaccaattccttggccatggctaacagaagaatgaaagctcacttcgagttcat 259
Query: 810 ggagaagttgggagttgacaaatggtgcttccatgacagggatattgccccggatgggaa 869
||||||| | |||||||| | |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 260 ggagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccctgatggcaa 319
Query: 870 gactcttgaagaaacaaattctaacttggatgagatagtccagctggcaaagcagctgca 929
|| || | ||||||||| ||||||||||||||||||| ||||||||||||| || ||
Sbjct: 320 aacactcgcggaaacaaatgctaacttggatgagatagttgagctggcaaagcaactcca 379
Query: 930 gggtgagaccaatataaagccattgtggggtactgcacagctctttatgcatcctcgtta 989
| |||||||||||||||||||||| ||||| |||||||| || || |||||||| |||||
Sbjct: 380 gagtgagaccaatataaagccattatggggaactgcacaacttttcatgcatccacgtta 439
Query: 990 catgcatggcgctgctactagcccagaggttaaagtatatgcttatgcggctgcacaagt 1049
|||||| || |||||||||||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 440 catgcacggagctgctactagcccagaggtcaaggtgtatgcttatgctgctgctcaagt 499
Query: 1050 taagaaagctttggaggtcactcact 1075
||||||||||||||||| |||||||
Sbjct: 500 gaagaaagctttggaggttactcact 525
>gb|BG367366.2|BG367366 HVSMEi0012A07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012A07f, mRNA sequence
Length = 715
Score = 416 bits (210), Expect = e-114
Identities = 453/534 (84%)
Strand = Plus / Plus
Query: 1124 aaactcttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaag 1183
|||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1 aaactcttctcaataccgatatgaagagggaacttgaacatttggctaactttcttcaag 60
Query: 1184 ctgctgttgactacaagaagaagattggattcaacggaacactattgatagagcctaaac 1243
|||||| || ||||||||||||| || || || ||||| | |||||||| |||||||
Sbjct: 61 ctgctgacaaccacaagaagaagatcgggtttcaccgaacattgttgatagaccctaaac 120
Query: 1244 cacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtttgcttttctac 1303
||| ||||||||||| || ||| |||||||||||||||| ||||| || |||| ||||
Sbjct: 121 caccagaaccaacaaagcatcagaatgactgggatgttgcaactacattctctttcctac 180
Query: 1304 agaagtacggtcttacaggagagttcaagattaatgttgagtgcaaccatgctactctat 1363
|||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 181 agaagtttggtcttacaggggaattcaagataaatgttgagtgcaaccatgctactctat 240
Query: 1364 ctggacacagctgccatcatgaattggagactgcacggattaatgggctgcttggaaata 1423
|||||| || |||||||| || | ||||||| ||| ||||||| | |||||||| |
Sbjct: 241 ttggacataggtgccatcacgagcttgagactgtacgcattaatgacattcttggaaaca 300
Query: 1424 tcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttcatgacagaca 1483
| |||||||||||||||||||| |||||||| |||||||| ||| ||||| | |||||||
Sbjct: 301 ttgatgcaaacactggtgatccacaagttggatgggacacggatgagttccttacagaca 360
Query: 1484 ttgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgcacctggtg 1543
|| ||| ||||| ||| |||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 361 tttgagaagctaccttgattatgtaaagtgtagttaagaatgatggacttgcgcctggtg 420
Query: 1544 gtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttcttg 1603
| || |||| ||| |||||||||||||| || |||||||||||||||||| |||| |||
Sbjct: 421 gcttgaactatgacgccaaattgcggagagagagtactgatgttgaggacctgttcattg 480
Query: 1604 cccatatctccggaatggacaccctggcacgtggcctccgtaacgttgccaagc 1657
||||||| | || || |||||| |||| || |||||||| || | ||||||||
Sbjct: 481 cccatatatatgggatagacaccatggcccgcggcctccgcaatggtgccaagc 534
>gb|BF254142.3|BF254142 HVSMEf0003C07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003C07f, mRNA sequence
Length = 524
Score = 414 bits (209), Expect = e-114
Identities = 372/425 (87%), Gaps = 1/425 (0%)
Strand = Plus / Plus
Query: 1414 cttggaaatatcgatgcaaacactggtgatcctcaagttggttgggacacagatcagttc 1473
|||||||| || |||||||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct: 17 cttggaaacattgatgcaaacactggtgatccacaagttggttgggacacggatgagttc 76
Query: 1474 atgacagacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggactt 1533
| ||||||||| |||| ||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 77 cttacagacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggactt 136
Query: 1534 gcacctggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggac 1593
|| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| |||
Sbjct: 137 gcgcctggtggcttcaactttgacgccaaattgcggagagagagtactgatgttgaagac 196
Query: 1594 atgtttcttgcccatatctccggaatggacaccctggcacgtggcctccgtaacgttgcc 1653
||||| ||||||||||||| || ||||||||| |||| || ||||| || || ||||||
Sbjct: 197 ctgtttattgcccatatctctgggatggacaccatggcccgcggccttcgcaatgttgcc 256
Query: 1654 aagctgattgaggatggttccctagatgatcttgtccgcaagcggtaccagagctttgat 1713
||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 257 aagctgattgaggatggttccctggacgagcttgtacgcaagcgctaccagagctttgac 316
Query: 1714 agtgagattggtgccttgatcgaggctgggaaaggagactttgagacgctagaaaagaag 1773
| ||||||||||||| ||||||| |||||||| || |||||||| |||||| |||||||
Sbjct: 317 actgagattggtgccatgatcgatgctgggaagggcgactttgaaacgcta-aaaagaaa 375
Query: 1774 gttctagagtggggtgagcccactgttgcatccggcaaacaggaactggcggagattctg 1833
|| | |||||||| ||||| || ||| |||| ||||||||||||||||| ||||| ||
Sbjct: 376 gtcttggagtggggcgagccaaccgttccatcgggcaaacaggaactggctgagatgcta 435
Query: 1834 ttcca 1838
|||||
Sbjct: 436 ttcca 440
>gb|CA023094.1|CA023094 HZ45D14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45D14
5-PRIME, mRNA sequence
Length = 486
Score = 412 bits (208), Expect = e-113
Identities = 409/476 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 11 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 70
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 71 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 130
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 131 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 190
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 191 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 250
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 251 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 310
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 311 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 370
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 371 aacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagcca 430
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctac 1007
|| ||||| |||||||| || || |||||||| ||||||||||| || ||||||||
Sbjct: 431 ttatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgctac 486
>gb|BQ468505.1|BQ468505 HM01H06T HM Hordeum vulgare subsp. vulgare cDNA clone HM01H06
5-PRIME, mRNA sequence
Length = 654
Score = 408 bits (206), Expect = e-112
Identities = 407/474 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 181 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 240
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 241 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 300
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 301 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 360
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 361 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 420
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 421 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 480
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 481 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 540
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 541 aacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagcca 600
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgct 1005
|| ||||| |||||||| || || |||||||| ||||||||||| || ||||||
Sbjct: 601 ttatggggaactgcacaacttttcatgcatccacgttacatgcacggagctgct 654
>gb|BF256860.2|BF256860 HVSMEf0011D11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0011D11f, mRNA sequence
Length = 815
Score = 400 bits (202), Expect = e-110
Identities = 412/482 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 237 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 296
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 297 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 356
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 357 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 416
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 417 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 476
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
Sbjct: 477 atggctaagagaagaatgaaagctcactttgagttcatggagaagcttggagttgaaagg 536
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || ||||||||| ||
Sbjct: 537 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcccggaaacaaatgct 596
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
|||| ||||||||| || ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 597 aactcggatgagattgttgagctggcaaagcaactccagagtgagaccaatataaagcca 656
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagc 1011
|| ||||| |||||||| || || |||||| | ||||||||||| || ||||||||||||
Sbjct: 657 ttatggggaactgcacaacttttcatgcattcacgttacatgcacggagctgctactagc 716
Query: 1012 cc 1013
||
Sbjct: 717 cc 718
>gb|AV927775.1|AV927775 AV927775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd3j23 3', mRNA sequence
Length = 572
Score = 400 bits (202), Expect = e-110
Identities = 322/362 (88%)
Strand = Plus / Minus
Query: 1477 acagacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgca 1536
||||||||| |||| ||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct: 561 acagacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcg 502
Query: 1537 cctggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatg 1596
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 501 cctggtggcttcaactttgatgccaaattgcggagggagagtactgatgttgaggacctg 442
Query: 1597 tttcttgcccatatctccggaatggacaccctggcacgtggcctccgtaacgttgccaag 1656
||| ||||||||||||| || ||||||||| |||| || |||||||| || |||||||||
Sbjct: 441 tttattgcccatatctctgggatggacaccatggcccgcggcctccgcaatgttgccaag 382
Query: 1657 ctgattgaggatggttccctagatgatcttgtccgcaagcggtaccagagctttgatagt 1716
|||||||||||||||||||| || || ||||| ||||| || |||||||||||||| | |
Sbjct: 381 ctgattgaggatggttccctggacgagcttgtacgcaaacgctaccagagctttgacact 322
Query: 1717 gagattggtgccttgatcgaggctgggaaaggagactttgagacgctagaaaagaaggtt 1776
|||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 321 gagattggtgccatgatcgaggctgggaagggcgactttgaaacgctagaaaagaaggtc 262
Query: 1777 ctagagtggggtgagcccactgttgcatccggcaaacaggaactggcggagattctgttc 1836
| |||||||| ||||| || ||| |||| |||||||||||| |||| ||||| ||||||
Sbjct: 261 ttggagtggggcgagccaaccgttccatcgggcaaacaggaattggctgagatgctgttc 202
Query: 1837 ca 1838
||
Sbjct: 201 ca 200
>gb|BQ665441.1|BQ665441 HX03K01u HX Hordeum vulgare subsp. vulgare cDNA clone HX03K01
3-PRIME, mRNA sequence
Length = 571
Score = 400 bits (202), Expect = e-110
Identities = 322/362 (88%)
Strand = Plus / Minus
Query: 1477 acagacattgcagaggctactttggttatgtcaagtgtagttaagaatggtggacttgca 1536
||||||||| |||| ||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct: 571 acagacatttcagaagctaccttgattatgtcaagtgtagttaagaatgatggacttgcg 512
Query: 1537 cctggtggtttcaactttgatgccaaattgcggagggaaagtactgatgttgaggacatg 1596
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct: 511 cctggtggcttcaactttgacgccaaattgcggagggagagtactgatgttgaggacctg 452
Query: 1597 tttcttgcccatatctccggaatggacaccctggcacgtggcctccgtaacgttgccaag 1656
||| ||||||||||||| || ||||||||| |||| || |||||||| || |||||||||
Sbjct: 451 tttattgcccatatctctgggatggacaccatggcccgcggcctccgcaatgttgccaag 392
Query: 1657 ctgattgaggatggttccctagatgatcttgtccgcaagcggtaccagagctttgatagt 1716
|||||||||||||||||||| || || ||||| |||||||| |||||||||||||| | |
Sbjct: 391 ctgattgaggatggttccctggacgagcttgtacgcaagcgctaccagagctttgacact 332
Query: 1717 gagattggtgccttgatcgaggctgggaaaggagactttgagacgctagaaaagaaggtt 1776
|||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 331 gagattggtgccatgatcgaggctgggaagggcgactttgaaacgctagaaaagaaggtc 272
Query: 1777 ctagagtggggtgagcccactgttgcatccggcaaacaggaactggcggagattctgttc 1836
| |||||||| ||||| || ||| |||| ||||||||||||||||| ||||| || |||
Sbjct: 271 ttggagtggggcgagccaaccgttccatcgggcaaacaggaactggctgagatgctattc 212
Query: 1837 ca 1838
||
Sbjct: 211 ca 210
>gb|BU971122.1|BU971122 HB16K20r BC Hordeum vulgare subsp. vulgare cDNA clone HB16K20
5-PRIME, mRNA sequence
Length = 387
Score = 383 bits (193), Expect = e-104
Identities = 315/356 (88%)
Strand = Plus / Plus
Query: 1053 gaaagctttggaggtcactcactacctaggtggtgaaaactatgtgttctggggtggaag 1112
||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct: 11 gaaagctttggaggttactcactacctaggcggtgagaactacgtattctggggtggaag 70
Query: 1113 agagggttaccaaactcttctgaatactgatatgaagagagaacttgaccatctggctaa 1172
||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||
Sbjct: 71 agagggttaccaaactcttctcaataccgatatgaagagggaacttgaacattnggctaa 130
Query: 1173 ctttcttcaagctgctgttgactacaagaagaagattggattcaacggaacactattgat 1232
||||||||||||||||||| || ||||||||||||| || || || |||||| | |||||
Sbjct: 131 ctttcttcaagctgctgttaaccacaagaagaagatcggctttaatggaacattgttgat 190
Query: 1233 agagcctaaaccacaggaaccaacaaaacaccagtatgactgggatgttgcgactacgtt 1292
||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct: 191 agagcctaagccacaagaaccaacaaagcatcagtatgactgggatgttgcaactacatt 250
Query: 1293 tgcttttctacagaagtacggtcttacaggagagttcaagattaatgttgagtgcaacca 1352
|||| |||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct: 251 ctctttcctacagaagtttggtcttacaggggaattcaagataaatgttgagtgcaacca 310
Query: 1353 tgctactctatctggacacagctgccatcatgaattggagactgcacggattaatg 1408
||| ||||| |||||||| ||||||||||| || | ||||||||||| |||||||
Sbjct: 311 tgccactctctctggacatagctgccatcacgagcttgagactgcacgcattaatg 366
>gb|BG299601.1|BG299601 HVSMEa0020P15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0020P15f, mRNA sequence
Length = 810
Score = 375 bits (189), Expect = e-102
Identities = 397/465 (85%), Gaps = 1/465 (0%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 229 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 288
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 289 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 348
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 349 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 408
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| || | |||||||||||||| ||||| ||||| ||||||
Sbjct: 409 gatccctttggtgcacctacgaaaaactggccttgggaggatggcaccaattccttggcc 468
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 469 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 528
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 529 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 588
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| |||||||| |||||||||||
Sbjct: 589 aacttggatgagatagttgagctggcaaagcaactccagagtgagacccatataaagcca 648
Query: 952 ttgt-ggggtactgcacagctctttatgcatcctcgttacatgca 995
|| | |||| |||||||| || || |||||||| |||||||||||
Sbjct: 649 ttatgggggaactgcacaacttttcatgcatccacgttacatgca 693
>gb|BG418037.1|BG418037 HVSMEk0020P20f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0020P20f, mRNA sequence
Length = 448
Score = 373 bits (188), Expect = e-101
Identities = 342/392 (87%), Gaps = 1/392 (0%)
Strand = Plus / Plus
Query: 691 acgttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggag 750
|||||||| |||||||| | ||||| || ||||| |||||||||| ||||||||||||
Sbjct: 56 acgttccg-ggtactggaggagatccctttggtgcacctacaaagaactggccttgggag 114
Query: 751 gacggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttcatg 810
|| ||||| ||||| ||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 115 gatggcaccaattccttggccatggctaagagaagaatgaaagctcccttcgagttcatg 174
Query: 811 gagaagttgggagttgacaaatggtgcttccatgacagggatattgccccggatgggaag 870
|||||| | |||||||| | |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 175 gagaagcttggagttgaaaggtggtgcttccatgacagggacatcgcccctgatggcaaa 234
Query: 871 actcttgaagaaacaaattctaacttggatgagatagtccagctggcaaagcagctgcag 930
|| || | ||||||||| ||||||||||||||||||| ||||||||||||| || |||
Sbjct: 235 acactcgcggaaacaaatgctaacttggatgagatagttgagctggcaaagcaactccag 294
Query: 931 ggtgagaccaatataaagccattgtggggtactgcacagctctttatgcatcctcgttac 990
|||||||||||||||||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 295 agtgagaccaatataaagccattatggggaactgcacaacttttcatgcatccacgttac 354
Query: 991 atgcatggcgctgctactagcccagaggttaaagtatatgcttatgcggctgcacaagtt 1050
||||| || |||||||||||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 355 atgcacggagctgctactagcccagaggtcaaggtgtatgcttatgctgctgctcaagtg 414
Query: 1051 aagaaagctttggaggtcactcactacctagg 1082
||||||||||||||||| ||||||||||||||
Sbjct: 415 aagaaagctttggaggttactcactacctagg 446
>gb|CA015391.1|CA015391 HT14C18r HT Hordeum vulgare subsp. vulgare cDNA clone HT14C18
5-PRIME, mRNA sequence
Length = 623
Score = 373 bits (188), Expect = e-101
Identities = 368/428 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 192 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 251
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 252 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 311
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 312 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 371
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 372 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 431
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 432 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 491
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 492 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 551
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 552 aacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagcca 611
Query: 952 ttgtgggg 959
|| |||||
Sbjct: 612 ttatgggg 619
>gb|AV917176.1|AV917176 AV917176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8e02 5', mRNA sequence
Length = 582
Score = 367 bits (185), Expect = 1e-099
Identities = 374/437 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 143 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 202
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| || || |||||
Sbjct: 203 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctgggaaagaaa 262
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || || || ||||| |||||||| |||||||| |
Sbjct: 263 atgaaggattggttgcggttcagcgtggcattttggcatacgttccggggtactggagga 322
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 323 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 382
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 383 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 442
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 443 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 502
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatataaagcca 951
||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 503 aacttggatgagatagttgagctggcaaagcaactccagagtgagaccaatataaagcca 562
Query: 952 ttgtggggtactgcaca 968
|| ||||| ||||||||
Sbjct: 563 ttatggggaactgcaca 579
>gb|BG415778.1|BG415778 HVSMEk0007M12f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0007M12f, mRNA sequence
Length = 666
Score = 351 bits (177), Expect = 6e-095
Identities = 297/337 (88%)
Strand = Plus / Plus
Query: 1502 ttatgtcaagtgtagttaagaatggtggacttgcacctggtggtttcaactttgatgcca 1561
||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||| ||||
Sbjct: 2 ttatgtcaagtgtagttaacaatgatggacttgcgcctggtggcttcaactttgacgcca 61
Query: 1562 aattgcggagggaaagtactgatgttgaggacatgtttcttgcccatatctccggaatgg 1621
|||||||||| || |||||||||||||||||| ||||| ||||||||||||| || ||||
Sbjct: 62 aattgcggagagagagtactgatgttgaggacctgtttattgcccatatctctgggatgg 121
Query: 1622 acaccctggcacgtggcctccgtaacgttgccaagctgattgaggatggttccctagatg 1681
||||| |||| || |||||||| || ||||||||||||||||||||||||||||| || |
Sbjct: 122 acaccatggcccgcggcctccgcaatgttgccaagctgattgaggatggttccctggacg 181
Query: 1682 atcttgtccgcaagcggtaccagagctttgatagtgagattggtgccttgatcgaggctg 1741
| ||||| |||||||| |||||||||||||| | ||||||||||||| ||||||||||||
Sbjct: 182 agcttgtacgcaagcgctaccagagctttgacactgagattggtgccatgatcgaggctg 241
Query: 1742 ggaaaggagactttgagacgctagaaaagaaggttctagagtggggtgagcccactgttg 1801
|||| || |||||||| |||||||||||||| || | |||||||| ||||| | |||
Sbjct: 242 ggaagggcgactttgaaacgctagaaaagaacgtcttggagtggggcgagccatccgttc 301
Query: 1802 catccggcaaacaggaactggcggagattctgttcca 1838
|||| ||||||||||||||||| ||||| || |||||
Sbjct: 302 catcaggcaaacaggaactggctgagatgctattcca 338
>gb|BE216164.2|BE216164 HV_CEb0009K15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009K15f, mRNA sequence
Length = 650
Score = 335 bits (169), Expect = 4e-090
Identities = 352/413 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | || ||||| ||||||||||| ||
Sbjct: 237 gatgattgggagggcgagttcttccccggcattgacaagatcaactatgagggtcctacc 296
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 297 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 356
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 357 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 416
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 417 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 476
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 477 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 536
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 537 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 596
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagaccaatat 944
||||||||||||||||| | ||||||||||| || ||| |||||||||||||
Sbjct: 597 aacttggatgagatagttgaactggcaaagcaactccagagtgagaccaatat 649
>gb|CA019283.1|CA019283 HV11I02r HV Hordeum vulgare subsp. vulgare cDNA clone HV11I02
5-PRIME, mRNA sequence
Length = 621
Score = 333 bits (168), Expect = 1e-089
Identities = 336/392 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 227 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 286
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 287 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 346
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 347 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 406
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 407 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 466
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 467 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 526
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 527 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 586
Query: 892 aacttggatgagatagtccagctggcaaagca 923
||||||||||||||||| |||||||||||||
Sbjct: 587 aacttggatgagatagttgagctggcaaagca 618
>gb|BF620832.2|BF620832 HVSMEc0020P15f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020P15f, mRNA sequence
Length = 849
Score = 319 bits (161), Expect = 2e-085
Identities = 347/409 (84%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 229 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 288
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct: 289 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctcggaaagaaa 348
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || ||||| ||||| |||||||| |||||||| |
Sbjct: 349 atgaaggattggttgcggttcagcgtggcgttttggcatacgttccggggtactggagga 408
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 409 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 468
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 469 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 528
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||| ||||||||||| || | ||| ||||| | || || | ||||||||| ||
Sbjct: 529 tggtgctttcatgacagggacatcgtccctgatggcataacactcgcggaaacaaatgct 588
Query: 892 aacttggatgagatagtccagctggcaaagcagctgcagggtgagacca 940
||||||||||||||||| ||||||||||||| || ||| |||||||||
Sbjct: 589 aacttggatgagatagttgagctggcaaagcaactccagagtgagacca 637
>gb|AV923068.1|AV923068 AV923068 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3j23 5', mRNA sequence
Length = 626
Score = 317 bits (160), Expect = 9e-085
Identities = 334/392 (85%)
Strand = Plus / Plus
Query: 532 gatgattgggagggggagttcttccccggcgtcccgaaaatcaagtatgagggtccaaca 591
|||||||||||||| ||||||||||||||| | | || ||||| ||||||||||| ||
Sbjct: 233 gatgattgggagggcgagttcttccccggcattgccaagatcaactatgagggtcctacc 292
Query: 592 agcaagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaag 651
|||||||| || ||| |||| |||||||||||| |||||||||||| || || |||||
Sbjct: 293 agcaagaagccgctttcttacaagtggtataacgcggaggaagtgatcctgggaaagaaa 352
Query: 652 atgaaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgct 711
|||||||||||| |||| ||||| || || || ||||| |||||||| |||||||| |
Sbjct: 353 atgaaggattggttgcggttcagcgtggcattttggcatacgttccggggtactggagga 412
Query: 712 gatcctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggcc 771
||||| || ||||| ||||| |||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 413 gatccctttggtgcacctacgaagaactggccttgggaggatggcaccaattccttggcc 472
Query: 772 atggctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaa 831
||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| |
Sbjct: 473 atggctaagagaagaatgaaagctcacttcgagttcatggagaagcttggagttgaaagg 532
Query: 832 tggtgcttccatgacagggatattgccccggatgggaagactcttgaagaaacaaattct 891
|||||||||||||||||||| || ||||| ||||| || || || | ||||||||| ||
Sbjct: 533 tggtgcttccatgacagggacatcgcccctgatggcaaaacactcgcggaaacaaatgct 592
Query: 892 aacttggatgagatagtccagctggcaaagca 923
||||||||||||||||| |||||||||||||
Sbjct: 593 aacttggatgagatagttgagctggcaaagca 624
>gb|CA015932.1|CA015932 HV11I02u HV Hordeum vulgare subsp. vulgare cDNA clone HV11I02
3-PRIME, mRNA sequence
Length = 482
Score = 315 bits (159), Expect = 3e-084
Identities = 258/291 (88%)
Strand = Plus / Minus
Query: 1548 caactttgatgccaaattgcggagggaaagtactgatgttgaggacatgtttcttgccca 1607
||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct: 482 caactttgacgccaaattgcggagggagagtactgatgttgaggacctgtttattgccca 423
Query: 1608 tatctccggaatggacaccctggcacgtggcctccgtaacgttgccaagctgattgagga 1667
|||||| || ||||||||| |||| || |||||||| || ||||||||||||||||||||
Sbjct: 422 tatctctgggatggacaccatggcccgcggcctccgcaatgttgccaagctgattgagga 363
Query: 1668 tggttccctagatgatcttgtccgcaagcggtaccagagctttgatagtgagattggtgc 1727
||||||||| || || ||||| |||||||| |||||||||||||| | ||||||||||||
Sbjct: 362 tggttccctggacgagcttgtacgcaagcgctaccagagctttgacactgagattggtgc 303
Query: 1728 cttgatcgaggctgggaaaggagactttgagacgctagaaaagaaggttctagagtgggg 1787
| |||||||||||||||| || |||||||| ||||||||||||||||| | ||||||||
Sbjct: 302 catgatcgaggctgggaagggcgactttgaaacgctagaaaagaaggtcttggagtgggg 243
Query: 1788 tgagcccactgttgcatccggcaaacaggaactggcggagattctgttcca 1838
||||| || ||| |||| ||||||||||||||||| ||||| || |||||
Sbjct: 242 cgagccaaccgttccatcgggcaaacaggaactggctgagatgctattcca 192
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 207,740
Number of Sequences: 312970
Number of extensions: 207740
Number of successful extensions: 51145
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51008
Number of HSP's gapped (non-prelim): 115
length of query: 2204
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2184
effective length of database: 168,875,139
effective search space: 368823303576
effective search space used: 368823303576
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)