BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580138.2.1
(1484 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ464513.1|BJ464513 BJ464513 K. Sato unpublished cDNA li... 496 e-138
gb|BI779147.2|BI779147 EBro01_SQ003_C08_R root, 3 week, hyd... 398 e-109
gb|BQ763590.1|BQ763590 EBro02_SQ008_J19_R root, 3 week, hyd... 396 e-109
gb|BF631021.3|BF631021 HVSMEb0014L21f Hordeum vulgare seedl... 353 1e-095
gb|BJ466873.1|BJ466873 BJ466873 K. Sato unpublished cDNA li... 353 1e-095
gb|BF626468.2|BF626468 HVSMEa0018H20f Hordeum vulgare seedl... 341 4e-092
gb|BQ762590.1|BQ762590 EBro02_SQ004_K10 _R root, 3 week, hy... 287 5e-076
gb|BE215249.2|BE215249 HV_CEb0006E12f Hordeum vulgare seedl... 280 1e-073
gb|BI777959.2|BI777959 EBro07_SQ001_I08_R root, 3 week, red... 274 8e-072
gb|BJ456327.1|BJ456327 BJ456327 K. Sato unpublished cDNA li... 262 3e-068
gb|BJ448607.1|BJ448607 BJ448607 K. Sato unpublished cDNA li... 260 1e-067
gb|BE519492.1|BE519492 HV_CEb0016J10f Hordeum vulgare seedl... 250 1e-064
gb|BJ456319.1|BJ456319 BJ456319 K. Sato unpublished cDNA li... 48 8e-004
gb|BJ452154.1|BJ452154 BJ452154 K. Sato unpublished cDNA li... 42 0.052
gb|BE215036.3|BE215036 HV_CEb0005J16f Hordeum vulgare seedl... 40 0.20
>gb|BJ464513.1|BJ464513 BJ464513 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34l06 5', mRNA sequence
Length = 553
Score = 496 bits (250), Expect = e-138
Identities = 472/546 (86%)
Strand = Plus / Minus
Query: 675 agcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaac 734
|||||||||||||||||| |||||||||||||||||||||| ||| |||||||| || ||
Sbjct: 546 agcctcaaggttgttgtagagcacaaggccccatgtgttcaacccgatggtcatgacgac 487
Query: 735 atgcttgatgtacacgaaatcaatggacatgcttgctaggtaggccactgcccaggtgta 794
||| |||||||||||||||||||| |||||||| || || ||||| | |||||| ||||
Sbjct: 486 atgtttgatgtacacgaaatcaatagacatgctcgccagataggctatcgcccagctgta 427
Query: 795 agcagtcacagtgaattggttgtctgtgaaaacatagatcacacttccaccaagtattgt 854
|||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 426 agcagtcagggtgaactggttatccgtgaaaacatatatcacacttccaccaagtatagt 367
Query: 855 ggagagtgaaagccatgtcttgagcgatggccatggctgatgaagatacagcgtctctcc 914
||| ||||| ||||||||||||| ||||| ||||| || ||||| || || ||||| ||
Sbjct: 366 ggaaagtgagagccatgtcttgaaagatgggcatggttggtgaaggtaaagtgtctcccc 307
Query: 915 gatcgcgacaaatataggcacagcagagcggaacacaatgaaagtatccacatcggcatg 974
|| || |||||||| ||||||||||| || ||||| |||||||| ||||||| ||||||
Sbjct: 306 aatggccacaaatatcggcacagcagaccgaaacacgatgaaagtgtccacattggcatg 247
Query: 975 aagcaggagttcactatttgtgaagatggagatgtagaacatcacagcagcaggtaagaa 1034
| |||||| || || ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 246 catcaggagctcgctgtttgtgaagattgagatgtagaacataacagcagcaggcaagaa 187
Query: 1035 cttccacattgtcctcaagttaagtccatcgtgctcaatgagcttgagctgtccacatag 1094
||||||||| || ||||| || |||| ||| ||||||| ||||| ||||||||||| ||
Sbjct: 186 cttccacatggttctcaaattcagtctatcaggctcaataagctttagctgtccacaaag 127
Query: 1095 gagaactccagcaacactagtgaaatactgcagagctgtcagggctccaggatatggaaa 1154
||||||||||||||||||||||| ||||| | ||||||||| |||||||| || |||||
Sbjct: 126 gagaactccagcaacactagtgaggtactgtaaagctgtcagtgctccagggtagggaaa 67
Query: 1155 tttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatacccagc 1214
||||||||||||||||||||||| ||||||||||| || ||||| | ||||| |||||
Sbjct: 66 cttcatgattgcccatttgttgataatcgagagcagagatgctgacaggcaataaccagc 7
Query: 1215 agccac 1220
||||||
Sbjct: 6 agccac 1
>gb|BI779147.2|BI779147 EBro01_SQ003_C08_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_C08 5', mRNA sequence
Length = 664
Score = 398 bits (201), Expect = e-109
Identities = 410/480 (85%)
Strand = Plus / Minus
Query: 805 gtgaattggttgtctgtgaaaacatagatcacacttccaccaagtattgtggagagtgaa 864
||||| ||||| || ||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 659 gtgaactggttatccgtgaaaacatatatcacacttccaccaagtatagtgganagtgag 600
Query: 865 agccatgtcttgagcgatggccatggctgatgaagatacagcgtctctccgatcgcgaca 924
||||||||||||| ||||| ||||| || ||||| || || ||||| || || || |||
Sbjct: 599 agccatgtcttgaaagatgggcatggttggtgaaggtaaagtgtctccccaatggccaca 540
Query: 925 aatataggcacagcagagcggaacacaatgaaagtatccacatcggcatgaagcaggagt 984
||||| ||||||||||| || ||||| |||||||| ||||||| |||||| | ||||||
Sbjct: 539 aatatcggcacagcagaccgaaacacgatgaaagtgtccacattggcatgcatcaggagc 480
Query: 985 tcactatttgtgaagatggagatgtagaacatcacagcagcaggtaagaacttccacatt 1044
|| || ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 479 tcgctgtttgtgaagattgagatgtagaacataacagcagcaggcaagaacttccacatg 420
Query: 1045 gtcctcaagttaagtccatcgtgctcaatgagcttgagctgtccacataggagaactcca 1104
|| ||||| || |||| ||| ||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 419 gttctcaaattcagtctatcaggctcaataagctttagctgtccacaaaggagaactcca 360
Query: 1105 gcaacactagtgaaatactgcagagctgtcagggctccaggatatggaaatttcatgatt 1164
||||||||||||| ||||| | ||||||||| |||||||| || ||||| |||||||||
Sbjct: 359 gcaacactagtgaggtactgtaaagctgtcagtgctccagggtagggaaacttcatgatt 300
Query: 1165 gcccatttgttgatgatcgagagcagcgacgctgataaacaatacccagcagccacacca 1224
|||||||||||||| ||||||||||| || ||||| | ||||| |||||||||||||||
Sbjct: 299 gcccatttgttgataatcgagagcagagatgctgacaggcaataaccagcagccacacca 240
Query: 1225 tagattgaggcttgctgcataagagtgttcaacatgttactccaggctccagttctctcg 1284
|||| || || || |||||||||||||| | ||||| |||| ||||||||| |||||
Sbjct: 239 tagaccgaagcatggcgcataagagtgttccatgtgttattccaagctccagttttctcg 180
>gb|BQ763590.1|BQ763590 EBro02_SQ008_J19_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J19 5', mRNA sequence
Length = 672
Score = 396 bits (200), Expect = e-109
Identities = 409/478 (85%), Gaps = 3/478 (0%)
Strand = Plus / Minus
Query: 283 atctgcagcaatttctgctgctcctcgtcgttctcttccttcggctcaaccttgggcgcc 342
||||||||||| |||||| ||| || |||| ||||||||| ||||||| |||||| ||
Sbjct: 478 atctgcagcaaattctgcccctcttcatcgtcctcttcctttggctcaatcttgggtacc 419
Query: 343 ttcggtttcgtggtggattgctggtagagcacaccacctgacatgcatatcaagagccca 402
|| || || ||||| |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 418 ttgggctttgtggtcgattgctggtagagaacgccaccagacatgcatatcaagagccca 359
Query: 403 atggtacccacaaaagaggcatgcttgtcccagataagcaaattaatcacaacagttagg 462
|| || ||||| | || |||||||||||||||||||||| ||| ||||| || || |||
Sbjct: 358 attgtccccaccagggatgcatgcttgtcccagataagcagattgatcacgacggtcagg 299
Query: 463 agcttgttaactatgccaagcactgtgaacccagtagcagaaatagctcgtctgcaggag 522
|||||||| ||||| || ||||| || || ||||| ||||| || || ||||||||||||
Sbjct: 298 agcttgttcactataccgagcaccgtaaatccagtggcagagatggcccgtctgcaggag 239
Query: 523 aatccgaagaaggatattgataatccaaacaggcatgagagagcaacagggaggaccaca 582
||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||
Sbjct: 238 aatccgaagaaggatatagataacccgaacaggcatgacagagcaacaggaaggaccacg 179
Query: 583 tcaaatgaaagccagtttga---cactttggagctgtcgaccttcatctgatcaaattct 639
||| | || |||||||||| || ||||||||||||||||||||||||| || |||
Sbjct: 178 tcataagatagccagtttgttgtcatcttggagctgtcgaccttcatctgattgaactct 119
Query: 640 cccattacgagaagctcgagtgggaatagcatcaaagcctcaaggttgttgtatagcaca 699
||||||| || ||||| |||||||| |||| || |||||||||||||||||| ||||||
Sbjct: 118 cccattataaggagctcaagtgggaacagcagcagagcctcaaggttgttgtagagcaca 59
Query: 700 aggccccatgtgttcagcccaatggtcattacaacatgcttgatgtacacgaaatcaa 757
|||||||||||||||| ||| |||||||| || ||||| |||||||||||||||||||
Sbjct: 58 aggccccatgtgttcaacccgatggtcatgacgacatgtttgatgtacacgaaatcaa 1
>gb|BF631021.3|BF631021 HVSMEb0014L21f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0014L21f, mRNA sequence
Length = 804
Score = 353 bits (178), Expect = 1e-095
Identities = 388/458 (84%)
Strand = Plus / Minus
Query: 827 catagatcacacttccaccaagtattgtggagagtgaaagccatgtcttgagcgatggcc 886
|||| |||||||||||||||||||| ||| | ||||| ||||||||||||| |||| |
Sbjct: 694 catatatcacacttccaccaagtatagtgcatagtgagagccatgtcttgaaacatgggc 635
Query: 887 atggctgatgaagatacagcgtctctccgatcgcgacaaatataggcacagcagagcgga 946
|||| || ||||| ||||| ||||| || || || |||||||| |||||||||| ||
Sbjct: 634 atggttggtgaaggtacagtgtctccccaatggccacaaatatcggcacagcagtccgtc 575
Query: 947 acacaatgaaagtatccacatcggcatgaagcaggagttcactatttgtgaagatggaga 1006
|||| |||||||| ||||||| |||||| | |||||| || || ||||||||||| ||||
Sbjct: 574 acacgatgaaagtgtccacattggcatgcatcaggagctcgctgtttgtgaagattgaga 515
Query: 1007 tgtagaacatcacagcagcaggtaagaacttccacattgtcctcaagttaagtccatcgt 1066
|||||||||| ||||||||||| |||||||||||||| || ||||| || |||| |||
Sbjct: 514 tgtagaacataacagcagcaggcaagaacttccacatggttctcaaattcagtctatcag 455
Query: 1067 gctcaatgagcttgagctgtccacataggagaactccagcaacactagtgaaatactgca 1126
||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct: 454 gctcaataagctttagctgtccacaaaggagaactccagcaacactagtgaggtactgta 395
Query: 1127 gagctgtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatcgaga 1186
||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct: 394 aagctgtcagtgctccagggtagggaaacttcatgattgcccatttgttgataatcgaga 335
Query: 1187 gcagcgacgctgataaacaatacccagcagccacaccatagattgaggcttgctgcataa 1246
|||| || ||||| | ||||| ||||||||||||||||||| || || || ||||||
Sbjct: 334 gcagagatgctgacaggcaataaccagcagccacaccatagaccgaagcatggcgcataa 275
Query: 1247 gagtgttcaacatgttactccaggctccagttctctcg 1284
|||||||| | ||||| |||| ||||||||| |||||
Sbjct: 274 gagtgttccatgtgttattccaagctccagttttctcg 237
>gb|BJ466873.1|BJ466873 BJ466873 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34l06 3', mRNA sequence
Length = 758
Score = 353 bits (178), Expect = 1e-095
Identities = 372/436 (85%), Gaps = 3/436 (0%)
Strand = Plus / Plus
Query: 283 atctgcagcaatttctgctgctcctcgtcgttctcttccttcggctcaaccttgggcgcc 342
||||||||||| |||||| ||| || |||| ||||||||| ||||||| |||||| ||
Sbjct: 306 atctgcagcaaattctgcccctcttcatcgtcctcttcctttggctcaatcttgggtacc 365
Query: 343 ttcggtttcgtggtggattgctggtagagcacaccacctgacatgcatatcaagagccca 402
|| || || ||||| |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 366 ttgggctttgtggtcgattgctggtagagaacgccaccagacatgcatatcaagagccca 425
Query: 403 atggtacccacaaaagaggcatgcttgtcccagataagcaaattaatcacaacagttagg 462
|| || ||||| | || |||||||||||||||||||||| ||| ||||| || || |||
Sbjct: 426 attgtccccaccagggatgcatgcttgtcccagataagcagattgatcacgacggtcagg 485
Query: 463 agcttgttaactatgccaagcactgtgaacccagtagcagaaatagctcgtctgcaggag 522
|||||||| ||||| || ||||| || || ||||| ||||| || || ||||||||||||
Sbjct: 486 agcttgttcactataccgagcaccgtaaatccagtggcagagatggcccgtctgcaggag 545
Query: 523 aatccgaagaaggatattgataatccaaacaggcatgagagagcaacagggaggaccaca 582
||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||
Sbjct: 546 aatccgaagaaggatatagataacccgaacaggcatgacagagcaacaggaaggaccacg 605
Query: 583 tcaaatgaaagccagtttga---cactttggagctgtcgaccttcatctgatcaaattct 639
||| | || |||||||||| || ||||||||||||||||||||||||| || |||
Sbjct: 606 tcataagatagccagtttgttgtcatcttggagctgtcgaccttcatctgattgaactct 665
Query: 640 cccattacgagaagctcgagtgggaatagcatcaaagcctcaaggttgttgtatagcaca 699
||||||| || ||||| |||||||| |||| || |||||||||||||||||| ||||||
Sbjct: 666 cccattataaggagctcaagtgggaacagcagcagagcctcaaggttgttgtagagcaca 725
Query: 700 aggccccatgtgttca 715
||||||||||||||||
Sbjct: 726 aggccccatgtgttca 741
>gb|BF626468.2|BF626468 HVSMEa0018H20f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0018H20f, mRNA sequence
Length = 792
Score = 341 bits (172), Expect = 4e-092
Identities = 382/452 (84%)
Strand = Plus / Minus
Query: 833 tcacacttccaccaagtattgtggagagtgaaagccatgtcttgagcgatggccatggct 892
|||| |||||||||||||| ||||| ||| | | ||||||||||| ||||| ||||| |
Sbjct: 632 tcacccttccaccaagtatagtggaaagtaagacccatgtcttgaaagatgggcatggtt 573
Query: 893 gatgaagatacagcgtctctccgatcgcgacaaatataggcacagcagagcggaacacaa 952
| ||||| ||||| || || || || || |||||||| ||||||||||| || ||||| |
Sbjct: 572 ggtgaaggtacagtgtttccccaatggccacaaatatcggcacagcagaccgaaacacga 513
Query: 953 tgaaagtatccacatcggcatgaagcaggagttcactatttgtgaagatggagatgtaga 1012
||||||| ||||||| |||||| | |||||| || || ||||||||||| ||||||||||
Sbjct: 512 tgaaagtgtccacattggcatgcatcaggagctcgctgtttgtgaagattgagatgtaga 453
Query: 1013 acatcacagcagcaggtaagaacttccacattgtcctcaagttaagtccatcgtgctcaa 1072
|||| ||||||||||| |||||||||||||| || |||| || |||| ||| ||||||
Sbjct: 452 acataacagcagcaggcaagaacttccacatggttttcaaattcagtctatcaggctcaa 393
Query: 1073 tgagcttgagctgtccacataggagaactccagcaacactagtgaaatactgcagagctg 1132
| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| | |||||
Sbjct: 392 taagctttagctgtccacaaaggagaactccagcaacactagtgaggtactgtaaagctg 333
Query: 1133 tcagggctccaggatatggaaatttcatgattgcccatttgttgatgatcgagagcagcg 1192
|||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 332 tcagtgctccagggtagggaaacttcatgattgcccatttgttgataatcgagagcagag 273
Query: 1193 acgctgataaacaatacccagcagccacaccatagattgaggcttgctgcataagagtgt 1252
| ||||| | ||||| ||||||||||||||||||| || || || ||||||||||||
Sbjct: 272 atgctgacaggcaataaccagcagccacaccatagaccgaagcatggcgcataagagtgt 213
Query: 1253 tcaacatgttactccaggctccagttctctcg 1284
|| | ||||| |||| ||||||||| |||||
Sbjct: 212 tccatgtgttattccaagctccagttttctcg 181
Score = 44.1 bits (22), Expect = 0.013
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1312 tcttcctttgaggtgtgtgagagattagacatct 1345
||||| ||||||| |||||||||||||||||||
Sbjct: 171 tcttcttttgagggctgtgagagattagacatct 138
Score = 40.1 bits (20), Expect = 0.20
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 703 ccccatgtgttcag-cccaatggtcattacaacatgcttgatgt 745
||||||||||||| |||||||||||| || ||||| |||||||
Sbjct: 766 ccccatgtgttcaaacccaatggtcatgacgacatgtttgatgt 723
>gb|BQ762590.1|BQ762590 EBro02_SQ004_K10 _R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_K10 5', mRNA sequence
Length = 649
Score = 287 bits (145), Expect = 5e-076
Identities = 286/333 (85%)
Strand = Plus / Minus
Query: 952 atgaaagtatccacatcggcatgaagcaggagttcactatttgtgaagatggagatgtag 1011
|||||||| ||||||| |||||| | |||||| || || ||||||||||| |||||||||
Sbjct: 645 atgaaagtgtccacattggcatgcatcaggagctcgctgtttgtgaagattgagatgtag 586
Query: 1012 aacatcacagcagcaggtaagaacttccacattgtcctcaagttaagtccatcgtgctca 1071
||||| ||||||||||| |||||||||||||| || ||||| || |||| ||| |||||
Sbjct: 585 aacataacagcagcaggcaagaacttccacatggttctcaaattcagtctatcaggctca 526
Query: 1072 atgagcttgagctgtccacataggagaactccagcaacactagtgaaatactgcagagct 1131
|| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| | ||||
Sbjct: 525 ataagctttagctgtccacaaaggagaactccagcaacactagtgaggtactgtaaagct 466
Query: 1132 gtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatcgagagcagc 1191
||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 465 gtcagtgctccagggtagggaaacttcatgattgcccatttgttgataatcgagagcaga 406
Query: 1192 gacgctgataaacaatacccagcagccacaccatagattgaggcttgctgcataagagtg 1251
|| ||||| | ||||| ||||||||||||||||||| || || || |||||||||||
Sbjct: 405 gatgctgacaggcaataaccagcagccacaccatagaccgaagcatggcgcataagagtg 346
Query: 1252 ttcaacatgttactccaggctccagttctctcg 1284
||| | ||||| |||| ||||||||| |||||
Sbjct: 345 ttccatgtgttattccaagctccagttttctcg 313
>gb|BE215249.2|BE215249 HV_CEb0006E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006E12f, mRNA sequence
Length = 906
Score = 280 bits (141), Expect = 1e-073
Identities = 285/333 (85%)
Strand = Plus / Minus
Query: 952 atgaaagtatccacatcggcatgaagcaggagttcactatttgtgaagatggagatgtag 1011
|||||||| ||||||| |||| | | |||||| || || ||||||||||| |||||||||
Sbjct: 527 atgaaagtgtccacattggcacgcatcaggagctcgctgtttgtgaagattgagatgtag 468
Query: 1012 aacatcacagcagcaggtaagaacttccacattgtcctcaagttaagtccatcgtgctca 1071
||||| ||||||||||| |||||||||||||| || ||||| || |||| ||| |||||
Sbjct: 467 aacataacagcagcaggcaagaacttccacatggttctcaaattcagtctatcaggctca 408
Query: 1072 atgagcttgagctgtccacataggagaactccagcaacactagtgaaatactgcagagct 1131
|| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| | ||||
Sbjct: 407 ataagctttagctgtccacaaaggagaactccagcaacactagtgaggtactgtaaagct 348
Query: 1132 gtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatcgagagcagc 1191
||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 347 gtcagtgctccagggtagggaaacttcatgattgcccatttgttgataatcgagagcaga 288
Query: 1192 gacgctgataaacaatacccagcagccacaccatagattgaggcttgctgcataagagtg 1251
|| ||||| | ||||| ||||||||||||||||||| || || || |||||||||||
Sbjct: 287 gatgctgacaggcaataaccagcagccacaccatagaccgaagcatggcgcataagagtg 228
Query: 1252 ttcaacatgttactccaggctccagttctctcg 1284
||| | ||||| |||| ||||||||| |||||
Sbjct: 227 ttccatgtgttattccaagctccagttttctcg 195
>gb|BI777959.2|BI777959 EBro07_SQ001_I08_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ001_I08 5', mRNA sequence
Length = 491
Score = 274 bits (138), Expect = 8e-072
Identities = 299/352 (84%), Gaps = 3/352 (0%)
Strand = Plus / Minus
Query: 283 atctgcagcaatttctgctgctcctcgtcgttctcttccttcggctcaaccttgggcgcc 342
||||||||||| |||||| ||| || |||| ||||||||| ||||||| |||||| ||
Sbjct: 361 atctgcagcaaattctgcccctcttcatcgtcctcttcctttggctcaatcttgggtacc 302
Query: 343 ttcggtttcgtggtggattgctggtagagcacaccacctgacatgcatatcaagagccca 402
|| || || ||||| |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 301 ttgggctttgtggtcgattgctggtagagaacgccaccagacatgcatatcaagagccca 242
Query: 403 atggtacccacaaaagaggcatgcttgtcccagataagcaaattaatcacaacagttagg 462
|| || ||||| | || |||||||||||||||||||||| ||| ||||| || || |||
Sbjct: 241 attgtccccaccagggatgcatgcttgtcccagataagcagattgatcacgacggtcagg 182
Query: 463 agcttgttaactatgccaagcactgtgaacccagtagcagaaatagctcgtctgcaggag 522
|||||||| ||||| || ||||| || || ||||| ||||| || || ||||||||||||
Sbjct: 181 agcttgttcactataccgagcaccgtaaatccagtggcagagatggcccgtctgcaggag 122
Query: 523 aatccgaagaaggatattgataatccaaacaggcatgagagagcaacagggaggaccaca 582
||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||
Sbjct: 121 aatccgaagaaggatatagataacccgaacaggcatgacagagcaacaggaaggaccacg 62
Query: 583 tcaaatgaaagccagtttga---cactttggagctgtcgaccttcatctgat 631
||| | || |||||||||| || |||||||||||||||||||||||||
Sbjct: 61 tcataagatagccagtttgttgtcatcttggagctgtcgaccttcatctgat 10
>gb|BJ456327.1|BJ456327 BJ456327 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20j05 3', mRNA sequence
Length = 547
Score = 262 bits (132), Expect = 3e-068
Identities = 272/319 (85%)
Strand = Plus / Plus
Query: 283 atctgcagcaatttctgctgctcctcgtcgttctcttccttcggctcaaccttgggcgcc 342
||||||||||| |||||| ||| || |||| ||||||||| ||||||| |||||| ||
Sbjct: 228 atctgcagcaaattctgcccctcttcatcgtcctcttcctttggctcaatcttgggtacc 287
Query: 343 ttcggtttcgtggtggattgctggtagagcacaccacctgacatgcatatcaagagccca 402
|| || || ||||| |||||||||||||| || ||||| ||||||||||||| |||||||
Sbjct: 288 ttgggctttgtggtcgattgctggtagagaacgccaccagacatgcatatcaggagccca 347
Query: 403 atggtacccacaaaagaggcatgcttgtcccagataagcaaattaatcacaacagttagg 462
|| || ||||| | || |||||||||||||||||||||| ||| ||||| || || |||
Sbjct: 348 attgtccccaccagggatgcatgcttgtcccagataagcanattgatcacgacggtcagg 407
Query: 463 agcttgttaactatgccaagcactgtgaacccagtagcagaaatagctcgtctgcaggag 522
|||||||| ||||| || ||||| || || ||||||||||| || || ||||||||||||
Sbjct: 408 agcttgttgactataccgagcaccgtaaatccagtagcagagatggcccgtctgcaggag 467
Query: 523 aatccgaagaaggatattgataatccaaacaggcatgagagagcaacagggaggaccaca 582
||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||
Sbjct: 468 aatccgaagaaggatatagataacccgaacaggcatgacagagcaacaggaaggaccacg 527
Query: 583 tcaaatgaaagccagtttg 601
||| | || ||||||||||
Sbjct: 528 tcataagatagccagtttg 546
>gb|BJ448607.1|BJ448607 BJ448607 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20j05 5', mRNA sequence
Length = 543
Score = 260 bits (131), Expect = 1e-067
Identities = 272/319 (85%)
Strand = Plus / Minus
Query: 283 atctgcagcaatttctgctgctcctcgtcgttctcttccttcggctcaaccttgggcgcc 342
||||||||||| |||||| ||| || |||| ||||||||| ||||||| |||||| ||
Sbjct: 331 atctgcagcaaattctgcccctcttcatcgtcctcttcctttggctcaatcttgggtacc 272
Query: 343 ttcggtttcgtggtggattgctggtagagcacaccacctgacatgcatatcaagagccca 402
|| || || ||||| |||||||||||||| || ||||| ||||||||||||| |||||||
Sbjct: 271 ttgggctttgtggtcgattgctggtagagaacgccaccagacatgcatatcaggagccca 212
Query: 403 atggtacccacaaaagaggcatgcttgtcccagataagcaaattaatcacaacagttagg 462
|| || ||||| | || |||||||||||||||||||||| ||| ||||| || || |||
Sbjct: 211 attgtccccaccagggatgcatgcttgtcccagataagcagattgatcacgacggtcagg 152
Query: 463 agcttgttaactatgccaagcactgtgaacccagtagcagaaatagctcgtctgcaggag 522
|||||||| ||||| || ||||| || || ||||||||||| || || ||||||||||||
Sbjct: 151 agcttgttgactataccgagcaccgtaaatccagtagcagagatggcccgtctgcaggag 92
Query: 523 aatccgaagaaggatattgataatccaaacaggcatgagagagcaacagggaggaccaca 582
||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||
Sbjct: 91 aatccgaagaaggatatagataacccgaacaggcatgacagagcaacaggaaggaccacg 32
Query: 583 tcaaatgaaagccagtttg 601
||| | || ||||||||||
Sbjct: 31 tcataagatagccagtttg 13
>gb|BE519492.1|BE519492 HV_CEb0016J10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0016J10f, mRNA sequence
Length = 515
Score = 250 bits (126), Expect = 1e-064
Identities = 252/294 (85%)
Strand = Plus / Minus
Query: 991 tttgtgaagatggagatgtagaacatcacagcagcaggtaagaacttccacattgtcctc 1050
||||||||||| ||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 471 tttgtgaagattcagatgtagaacataacagcagcaggcaagaacttccacatggttctc 412
Query: 1051 aagttaagtccatcgtgctcaatgagcttgagctgtccacataggagaactccagcaaca 1110
|| || |||| ||| ||||||| ||| | ||||||||||| ||||||||||||||||||
Sbjct: 411 aaattcagtctatcaggctcaataagccttagctgtccacaaaggagaactccagcaaca 352
Query: 1111 ctagtgaaatactgcagagctgtcagggctccaggatatggaaatttcatgattgcccat 1170
||||||| ||||| | ||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 351 ctagtgaggtactgtaaagctgtcagtgctccagggtagggaaacttcatgattgcccat 292
Query: 1171 ttgttgatgatcgagagcagcgacgctgataaacaatacccagcagccacaccatagatt 1230
|||||||| ||||||||||| || ||||| | ||||| |||||||||||||||||||
Sbjct: 291 ttgttgataatcgagagcagagatgctgacaggcaataaccagcagccacaccatagacc 232
Query: 1231 gaggcttgctgcataagagtgttcaacatgttactccaggctccagttctctcg 1284
|| || || |||||||||||||| | ||||| |||| ||||||||| |||||
Sbjct: 231 gaagcatggcgcataagagtgttccatgtgttattccaagctccagttttctcg 178
>gb|BJ456319.1|BJ456319 BJ456319 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20i17 3', mRNA sequence
Length = 141
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 atctgcagcaatttctgctgctcctcgtcgttctcttccttcggctcaaccttggg 338
||||||||||| |||||| ||| || |||| ||||||||| ||||||| ||||||
Sbjct: 69 atctgcagcaaattctgcccctcttcatcgtcctcttcctttggctcaatcttggg 124
>gb|BJ452154.1|BJ452154 BJ452154 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37p10 5', mRNA sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.052
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 681 aaggttgttgtatagcacaaggccccatgtgtt 713
|||||||||||| ||||||| |||||||||||
Sbjct: 135 aaggttgttgtacagcacaaaaccccatgtgtt 103
>gb|BE215036.3|BE215036 HV_CEb0005J16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005J16f, mRNA sequence
Length = 952
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 682 aggttgttgtatagcacaaggccccatgtgtt 713
||||||||||| ||||||| |||||||||||
Sbjct: 657 aggttgttgtacagcacaaacccccatgtgtt 626
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,349
Number of Sequences: 312970
Number of extensions: 139349
Number of successful extensions: 41233
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41197
Number of HSP's gapped (non-prelim): 29
length of query: 1484
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1465
effective length of database: 169,188,109
effective search space: 247860579685
effective search space used: 247860579685
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)