BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424417.2.1
(1137 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA li... 351 3e-095
gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. v... 327 5e-088
gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA li... 327 5e-088
gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. v... 301 3e-080
gb|BQ458310.1|BQ458310 HA05J23r HA Hordeum vulgare subsp. v... 262 2e-068
gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. v... 226 1e-057
gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA li... 198 3e-049
gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA li... 192 2e-047
gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. v... 184 4e-045
gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. v... 184 4e-045
gb|BQ761920.1|BQ761920 EBpi01_SQ005_D08_R pistil, 1 DPA, no... 174 4e-042
gb|CB880767.1|CB880767 HM07M03w HM Hordeum vulgare subsp. v... 174 4e-042
gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA li... 155 4e-036
gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA li... 147 9e-034
gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow st... 139 2e-031
gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no... 139 2e-031
gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedl... 125 3e-027
gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedl... 125 3e-027
gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedl... 123 1e-026
gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike... 117 8e-025
gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA li... 115 3e-024
gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA,... 115 3e-024
gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. v... 115 3e-024
gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedl... 113 1e-023
gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. v... 105 3e-021
gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachi... 100 2e-019
gb|BU994106.1|BU994106 HM05M03r HM Hordeum vulgare subsp. v... 96 3e-018
gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedl... 88 7e-016
gb|AL504577.1|AL504577 AL504577 Hordeum vulgare Barke roots... 84 1e-014
gb|BJ549631.1|BJ549631 BJ549631 K. Sato unpublished cDNA li... 82 5e-014
gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedl... 78 7e-013
gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachi... 78 7e-013
gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachi... 74 1e-011
gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. v... 72 4e-011
gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. v... 66 3e-009
gb|BF623534.2|BF623534 HVSMEa0002J16f Hordeum vulgare seedl... 62 4e-008
gb|CK125801.1|CK125801 BES1824110n12 BES1824 Hordeum vulgar... 62 4e-008
gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, dro... 60 2e-007
gb|BI947290.1|BI947290 HVSMEl0005A16f Hordeum vulgare spike... 58 7e-007
gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA li... 58 7e-007
gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA li... 58 7e-007
gb|BI777453.2|BI777453 EBro04_SQ001_E09_R root, 3 week, sal... 58 7e-007
gb|CB877686.1|CB877686 HP05N08T HP Hordeum vulgare subsp. v... 58 7e-007
gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA li... 54 1e-005
gb|BI777594.2|BI777594 EBro04_SQ001_L05_R root, 3 week, sal... 50 2e-004
gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots... 48 6e-004
gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike... 46 0.003
gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachi... 46 0.003
gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedl... 46 0.003
gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA li... 46 0.003
gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. v... 46 0.003
gb|BQ761570.1|BQ761570 EBem10_SQ001_K03_R embryo, 2 Day ger... 46 0.003
gb|CA010065.1|CA010065 HT11L08u HT Hordeum vulgare subsp. v... 46 0.003
gb|AL503387.1|AL503387 AL503387 Hordeum vulgare Barke roots... 44 0.010
gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA li... 42 0.040
gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA li... 42 0.040
gb|BM374699.1|BM374699 EBma05_SQ002_I05_R maternal, 12 DPA,... 40 0.16
>gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 3', mRNA sequence
Length = 634
Score = 351 bits (177), Expect = 3e-095
Identities = 375/441 (85%)
Strand = Plus / Minus
Query: 116 acggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgac 175
||||| |||||| ||||||| ||||||||||||||||| ||||| |||||||||| |||
Sbjct: 630 acggtgatcagctcgtcgccagggaagaagcaggaggccctcgagaggcttggcgctgac 571
Query: 176 gccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggc 235
|| ||||||||||||||||||||||| || |||||||| || | |||||||||||| |||
Sbjct: 570 gcgttcgtcgtcagcaaggacgccgacgagatgaaggctgcggtgagcaccatggatggc 511
Query: 236 atcatcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagccc 295
||||| ||||||||||| || ||| || || ||||||| | | || || |||||||||
Sbjct: 510 atcataaacacggtgtctgcaaacatccccatggcccctctcctcgggctactcaagccc 451
Query: 296 aacggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgat 355
|||||||||||||||||||||||||| || ||||| ||||| |||| ||||||| |
Sbjct: 450 aacggcaagatgatcatggtcggcctcccagagcagcctatcgaggtccctccctttgct 391
Query: 356 ctcatcattgggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcag 415
|| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 390 ctggttgccaggaacaagaccctggccgggagctgcatcggcggcatgagggacacccag 331
Query: 416 gagatgatcaacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcg 475
|||||| | || | ||||| ||||||||||||||||| ||||| || || | ||||
Sbjct: 330 gagatgctggacctcgcggcgaagcacggcgtgacggcagacatcgaggtgataagcgcg 271
Query: 476 gactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtc 535
|| ||||||||||| || ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 270 gagtacgtgaacacagcgatggagcgccttgccaaggctgacgtcaggtatcgattcgtc 211
Query: 536 atcgacatcggcaacaccctc 556
|||||||||| ||||||||||
Sbjct: 210 atcgacatcgccaacaccctc 190
>gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
5-PRIME, mRNA sequence
Length = 573
Score = 327 bits (165), Expect = 5e-088
Identities = 357/421 (84%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
||||||||||||||||||||| |||||||| || ||| |||| | |||||| |||| ||
Sbjct: 152 cagccccatgaagtaccacgggctgaacgttcccgggttgcaccttggcgtgctgggact 211
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggt 120
||| || ||||||||||||||||||||||||| ||| || || ||| ||||| |||||
Sbjct: 212 gggcggactgggccacgtcgccgtcaagttcggcaaagcctttgggatgaaggtgacggt 271
Query: 121 catcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgcctt 180
|||||| ||||||| ||||||||||||||||| ||||| |||||||||| ||||| ||
Sbjct: 272 gatcagctcgtcgccagggaagaagcaggaggccctcgagaggcttggcgctgacgcgtt 331
Query: 181 cgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcat 240
||||||||||||||||||||| || |||||||| || | |||||||||||| ||||||||
Sbjct: 332 cgtcgtcagcaaggacgccgacgagatgaaggctgcggtgagcaccatggatggcatcat 391
Query: 241 caacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacgg 300
||||||||||| || ||| || || ||||||| | | || || ||||||||||||||
Sbjct: 392 aaacacggtgtctgcaaacatccccatggcccctctcctcgggctactcaagcccaacgg 451
Query: 301 caagatgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatctcat 360
||||||||||||||||||||| || ||||| ||||| |||| ||||||| ||| |
Sbjct: 452 caagatgatcatggtcggcctcccagagcagcctatcgaggtccctccctttgctctggt 511
Query: 361 cattgggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagat 420
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 512 tgccaggaacaagaccctggccgggagctgcatcggcggcatgagggacacccaggagat 571
Query: 421 g 421
|
Sbjct: 572 g 572
>gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 5', mRNA sequence
Length = 572
Score = 327 bits (165), Expect = 5e-088
Identities = 354/417 (84%)
Strand = Plus / Plus
Query: 140 aagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgcc 199
|||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct: 15 aagaagcaggaggccctcgagaggcttggcgctgacgcgttcgtcgtcagcaaggacgcc 74
Query: 200 gaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcgaac 259
|| || |||||||| || | |||||||||||| |||||||| ||||||||||| || |||
Sbjct: 75 gacgagatgaaggctgcggtgagcaccatggatggcatcataaacacggtgtctgcaaac 134
Query: 260 ctcaccttggccccgtacatgggcctgctcaagcccaacggcaagatgatcatggtcggc 319
|| || ||||||| | | || || |||||||||||||||||||||||||||||||||
Sbjct: 135 atccccatggcccctctcctcgggctactcaagcccaacggcaagatgatcatggtcggc 194
Query: 320 ctgcccaccaagcctctcgagatcccgccctttgatctcatcattgggaacaagaccctg 379
|| || ||||| ||||| |||| ||||||| ||| | ||||||||||||||
Sbjct: 195 ctcccagagcagcctatcgaggtccctccctttgctctggttgccaggaacaagaccctg 254
Query: 380 gccgggagctgcatcggcggcatgagggacacgcaggagatgatcaacgtggcggccaag 439
|||||||||||||||||||||||||||||||| ||||||||| | || | ||||| |||
Sbjct: 255 gccgggagctgcatcggcggcatgagggacacccaggagatgctggacctcgcggcgaag 314
Query: 440 cacggcgtgacggcggacatagaactggtggccgcggactacgtgaacacggccatggag 499
|||||||||||||| ||||| || || | |||||| ||||||||||| || ||||||
Sbjct: 315 cacggcgtgacggcagacatcgaggtgataagcgcggagtacgtgaacacagcgatggag 374
Query: 500 cgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaacaccctc 556
||||| |||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct: 375 cgccttgccaaggctgacgtcaggtatcgattcgtcatcgacatcgccaacaccctc 431
>gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. vulgare cDNA clone HM11I22
3-PRIME, mRNA sequence
Length = 596
Score = 301 bits (152), Expect = 3e-080
Identities = 334/395 (84%)
Strand = Plus / Minus
Query: 162 ggcttggcgccgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcga 221
|||||||||| ||||| ||||||||||||||||||||||| || |||||||| || | ||
Sbjct: 591 ggcttggcgctgacgcgttcgtcgtcagcaaggacgccgacgagatgaaggctgcggtga 532
Query: 222 gcaccatggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacatgg 281
|||||||||| |||||||| ||||||||||| || || || || ||||||| | | |
Sbjct: 531 gcaccatggatggcatcataaacacggtgtctgcanacatccccatggcccctctcctcg 472
Query: 282 gcctgctcaagcccaacggcaagatgatcatggtcggcctgcccaccaagcctctcgaga 341
| || ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 471 ggctactcaagcccaacggcaagatgatcatggtcggcctcccagagcagcctatcgagg 412
Query: 342 tcccgccctttgatctcatcattgggaacaagaccctggccgggagctgcatcggcggca 401
|||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 411 tccctccctttgctctggttgccaggaacaagaccctggccgggagctgcatcggcggca 352
Query: 402 tgagggacacgcaggagatgatcaacgtggcggccaagcacggcgtgacggcggacatag 461
|||||||||| ||||||||| | || | ||||| ||||||||||||||||| ||||| |
Sbjct: 351 tgagggacacccaggagatgctggacctcgcggcgaagcacggcgtgacggcagacatcg 292
Query: 462 aactggtggccgcggactacgtgaacacggccatggagcgcctggccaaggctgacgtca 521
| || | |||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 291 aggtgataagcgcggagtacgtgaacacagcgatggagcgccttgccaaggctgacgtca 232
Query: 522 ggtaccgcttcgtcatcgacatcggcaacaccctc 556
|||| || |||||||||||||||| ||||||||||
Sbjct: 231 ggtatcgattcgtcatcgacatcgccaacaccctc 197
>gb|BQ458310.1|BQ458310 HA05J23r HA Hordeum vulgare subsp. vulgare cDNA clone HA05J23
5-PRIME, mRNA sequence
Length = 427
Score = 262 bits (132), Expect = 2e-068
Identities = 270/316 (85%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
||||||||||||||||||||| |||||||| || ||| |||| | |||||| |||| ||
Sbjct: 112 cagccccatgaagtaccacgggctgaacgttcccgggttgcaccttggcgtgctgggact 171
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggt 120
||| || ||||||||||||||||||||||||| ||| || || ||| ||||| |||||
Sbjct: 172 gggcggactgggccacgtcgccgtcaagttcggcaaagcctttgggatgaaggtgacggt 231
Query: 121 catcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgcctt 180
|||||| ||||||| ||||||||||||||||| ||||| |||||||||| ||||| ||
Sbjct: 232 gatcagctcgtcgccagggaagaagcaggaggccctcgagaggcttggcgctgacgcgtt 291
Query: 181 cgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcat 240
||||||||||||||||||||| || |||||||| || | |||||||||||| ||||||||
Sbjct: 292 cgtcgtcagcaaggacgccgacgagatgaaggctgcggtgagcaccatggatggcatcat 351
Query: 241 caacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacgg 300
||||||||||| || ||| || || ||||||| | | || || ||||||||||||||
Sbjct: 352 aaacacggtgtctgcaaacatccccatggcccctctcctcgggctactcaagcccaacgg 411
Query: 301 caagatgatcatggtc 316
||||||||||||||||
Sbjct: 412 caagatgatcatggtc 427
>gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
3-PRIME, mRNA sequence
Length = 497
Score = 226 bits (114), Expect = 1e-057
Identities = 231/270 (85%)
Strand = Plus / Minus
Query: 287 ctcaagcccaacggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccg 346
||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct: 465 ctcaagcccaacggcaagatgatcatggtcggcctcccagagcagcctatcgaggtccct 406
Query: 347 ccctttgatctcatcattgggaacaagaccctggccgggagctgcatcggcggcatgagg 406
||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccctttgctctggttgccaggaacaagaccctggccgggagctgcatcggcggcatgagg 346
Query: 407 gacacgcaggagatgatcaacgtggcggccaagcacggcgtgacggcggacatagaactg 466
||||| ||||||||| | || | ||||| ||||||||||||||||| ||||| || ||
Sbjct: 345 gacacccaggagatgctggacctcgcggcgaagcacggcgtgacggcagacatcgaggtg 286
Query: 467 gtggccgcggactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtac 526
| |||||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 285 ataagcgcggagtacgtgaacacagcgatggagcgccttgccaaggctgacgtcaggtat 226
Query: 527 cgcttcgtcatcgacatcggcaacaccctc 556
|| |||||||||||||||| ||||||||||
Sbjct: 225 cgattcgtcatcgacatcgccaacaccctc 196
>gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25k20 3', mRNA sequence
Length = 600
Score = 198 bits (100), Expect = 3e-049
Identities = 169/192 (88%)
Strand = Plus / Minus
Query: 365 gggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatc 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 351 gggaacaagaccctggccgggagctgcatcggcggcatgagggacacccaggagatgctg 292
Query: 425 aacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtg 484
|| | ||||| ||||||||||||||||| ||||| || || | |||||| ||||||
Sbjct: 291 gacctcgcggcgaagcacggcgtgacggcagacatcgaggtgataagcgcggagtacgtg 232
Query: 485 aacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatc 544
||||| || ||||||||||| ||||||||||| |||||||| || |||||||||||||||
Sbjct: 231 aacacagcgatggagcgccttgccaaggctgatgtcaggtatcgattcgtcatcgacatc 172
Query: 545 ggcaacaccctc 556
| ||||||||||
Sbjct: 171 gccaacaccctc 160
Score = 91.7 bits (46), Expect = 5e-017
Identities = 88/102 (86%)
Strand = Plus / Minus
Query: 220 gagcaccatggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacat 279
|||||||||||| |||||||| ||||||||||| || ||| || || ||||||| | |
Sbjct: 597 gagcaccatggatggcatcataaacacggtgtctgcaaacatccccatggcccctctcct 538
Query: 280 gggcctgctcaagcccaacggcaagatgatcatggtcggcct 321
|| || |||||||||||||||||||||||||||||||||||
Sbjct: 537 cgggctactcaagcccaacggcaagatgatcatggtcggcct 496
>gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd27e20, mRNA
sequence
Length = 646
Score = 192 bits (97), Expect = 2e-047
Identities = 166/189 (87%)
Strand = Plus / Minus
Query: 367 gaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaa 426
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 385 gaacaagaccctggccgggagctgcatcggcggcatgagggacacccaggagatgctgga 326
Query: 427 cgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaa 486
||||||| ||||||| ||||||||||||||| || || | | ||| || ||||||||
Sbjct: 325 tctggcggcgaagcacgacgtgacggcggacatcgaggtgattgacgccgagtacgtgaa 266
Query: 487 cacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcgg 546
||||||||||||||| || |||||||| || |||||||| || |||||||||||||||||
Sbjct: 265 cacggccatggagcgacttgccaaggccgatgtcaggtatcgattcgtcatcgacatcgg 206
Query: 547 caacaccct 555
||| |||||
Sbjct: 205 caataccct 197
Score = 119 bits (60), Expect = 2e-025
Identities = 174/212 (82%)
Strand = Plus / Minus
Query: 110 aaggtcacggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggc 169
||||| ||||| |||||| ||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 642 aaggtgacggtgatcagctcgtcgcccgggaagaagcaggaggccctcgagcggttaggt 583
Query: 170 gccgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatg 229
|||||||| ||||| ||||||||||| || || || |||||||| || || ||||||
Sbjct: 582 gccgacgcgttcgttgtcagcaaggatgctgaggagatgaaggctgcaatgaataccatg 523
Query: 230 gacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctc 289
|| |||||||| ||||||||||| || ||| || || ||||||| | | || || ||
Sbjct: 522 gatggcatcataaacacggtgtctgcaaacatccccatggcccctctcttagggctactg 463
Query: 290 aagcccaacggcaagatgatcatggtcggcct 321
|| ||||||||||||||||||||||| |||||
Sbjct: 462 aaacccaacggcaagatgatcatggttggcct 431
>gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. vulgare cDNA clone HM05N11
5-PRIME, mRNA sequence
Length = 480
Score = 184 bits (93), Expect = 4e-045
Identities = 165/189 (87%)
Strand = Plus / Plus
Query: 367 gaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaa 426
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 69 gaacaagaccctggccgggagctgcatcggcggcatgagggacacccaggagatgctgga 128
Query: 427 cgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaa 486
||||||| ||||| | ||||||||||||||| || || | | ||| || ||||||||
Sbjct: 129 tctggcggcgaagcatgacgtgacggcggacatcgaggtgattgacgccgagtacgtgaa 188
Query: 487 cacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcgg 546
||||||||||||||| || |||||||| || |||||||| || |||||||||||||||||
Sbjct: 189 cacggccatggagcgacttgccaaggccgatgtcaggtatcggttcgtcatcgacatcgg 248
Query: 547 caacaccct 555
||| |||||
Sbjct: 249 caataccct 257
>gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. vulgare cDNA clone HM07N11
3-PRIME, mRNA sequence
Length = 479
Score = 184 bits (93), Expect = 4e-045
Identities = 165/189 (87%)
Strand = Plus / Minus
Query: 367 gaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaa 426
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 412 gaacaagaccctggccgggagctgcatcggcggcatgagggacacccaggagatgctgga 353
Query: 427 cgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaa 486
||||||| ||||| | ||||||||||||||| || || | | ||| || ||||||||
Sbjct: 352 tctggcggcgaagcatgacgtgacggcggacatcgaggtgattgacgccgagtacgtgaa 293
Query: 487 cacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcgg 546
||||||||||||||| || |||||||| || |||||||| || |||||||||||||||||
Sbjct: 292 cacggccatggagcgacttgccaaggccgatgtcaggtatcggttcgtcatcgacatcgg 233
Query: 547 caacaccct 555
||| |||||
Sbjct: 232 caataccct 224
>gb|BQ761920.1|BQ761920 EBpi01_SQ005_D08_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_D08 5', mRNA sequence
Length = 383
Score = 174 bits (88), Expect = 4e-042
Identities = 154/176 (87%)
Strand = Plus / Plus
Query: 381 ccgggagctgcatcggcggcatgagggacacgcaggagatgatcaacgtggcggccaagc 440
||||||||||||||||||||||||||||||| ||||||||| | || | ||||| ||||
Sbjct: 1 ccgggagctgcatcggcggcatgagggacacccaggagatgctggacctcgcggcgaagc 60
Query: 441 acggcgtgacggcggacatagaactggtggccgcggactacgtgaacacggccatggagc 500
||||||||||||| ||||| || || | |||||| ||||||||||| || |||||||
Sbjct: 61 acggcgtgacggcagacatcgaggtgataagcgcggagtacgtgaacacagcgatggagc 120
Query: 501 gcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaacaccctc 556
|||| |||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct: 121 gccttgccaaggctgacgtcaggtatcgattcgtcatcgacatcgccaacaccctc 176
>gb|CB880767.1|CB880767 HM07M03w HM Hordeum vulgare subsp. vulgare cDNA clone HM07M03
3-PRIME, mRNA sequence
Length = 552
Score = 174 bits (88), Expect = 4e-042
Identities = 154/176 (87%)
Strand = Plus / Minus
Query: 381 ccgggagctgcatcggcggcatgagggacacgcaggagatgatcaacgtggcggccaagc 440
||||||||||||||||||||||||||||||| ||||||||| | || | ||||| ||||
Sbjct: 552 ccgggagctgcatcggcggcatgagggacacccaggagatgctggacctcgcggcgaagc 493
Query: 441 acggcgtgacggcggacatagaactggtggccgcggactacgtgaacacggccatggagc 500
||||||||||||| ||||| || || | |||||| ||||||||||| || |||||||
Sbjct: 492 acggcgtgacggcagacatcgaggtgataagcgcggagtacgtgaacacagcgatggagc 433
Query: 501 gcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaacaccctc 556
|||| |||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct: 432 gccttgccaaggctgacgtcaggtatcgattcgtcatcgacatcgccaacaccctc 377
>gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c03 3', mRNA sequence
Length = 641
Score = 155 bits (78), Expect = 4e-036
Identities = 162/190 (85%)
Strand = Plus / Minus
Query: 367 gaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaa 426
||||||||||||||| ||||||||||| ||||||||||| || || ||||||||| | |
Sbjct: 425 gaacaagaccctggcggggagctgcatgggcggcatgagcgagacccaggagatgctgga 366
Query: 427 cgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaa 486
| | ||||||||||||||||||||||| ||||| || | | || ||||| || ||
Sbjct: 365 cctcgcggccaagcacggcgtgacggccgacatcgaggtcatccgtgccgactatgtcaa 306
Query: 487 cacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcgg 546
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 305 cacggccatggaccgcctcgccaaggctgatgtaaggtatcgcttcgtcatcgacatcgg 246
Query: 547 caacaccctc 556
||||||||||
Sbjct: 245 caacaccctc 236
Score = 113 bits (57), Expect = 1e-023
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 161 cggcttggcgccgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcg 220
||||| ||||||||||| |||||||||||||| ||||||| || |||||||| || |
Sbjct: 631 cggctcggcgccgacgcgttcgtcgtcagcaacaacgccgacgagatgaaggccgcgatg 572
Query: 221 agcaccatggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacatg 280
||||||||||| |||||||||||||| ||||| || ||| | || | ||||| | |
Sbjct: 571 agcaccatggatggcatcatcaacaccgtgtctgcaaacatgcccatagcccctctcctc 512
Query: 281 ggcctgctcaagcccaacggcaagatgatcatggtcggcct 321
||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 511 ggcttgctcaagcccaacggcaagatggtcatggtcggcct 471
>gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k08 5', mRNA sequence
Length = 627
Score = 147 bits (74), Expect = 9e-034
Identities = 161/190 (84%)
Strand = Plus / Plus
Query: 367 gaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaa 426
||||||||||||| | ||||| | ||||||||||||||| ||||| ||||||||| | |
Sbjct: 195 gaacaagaccctgtcagggagtttcatcggcggcatgagcgacacccaggagatgctgga 254
Query: 427 cgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaa 486
| | ||||| ||||| || |||||||| ||||| || || | |||||| ||||||||
Sbjct: 255 cctcgcggcgaagcatggtgtgacggcagacatcgaggtgatcagcgcggaatacgtgaa 314
Query: 487 cacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcgg 546
|||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||| ||
Sbjct: 315 cacggctatggagcgccttgccaaggcggacgtcaggtatcgattcgtcatcgacattgg 374
Query: 547 caacaccctc 556
||||||||||
Sbjct: 375 caacaccctc 384
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 220 gagcaccatggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacat 279
|||||||||||| |||||||| ||||||||||| || ||| || || ||||||| | |
Sbjct: 48 gagcaccatggatggcatcataaacacggtgtctgcaaacatccccatggcccctctctt 107
Query: 280 gggcctgctcaagcccaacggcaagatgatcatggtcggcct 321
|| || ||||||||||||||||||||| |||||||||||||
Sbjct: 108 cgggctactcaagcccaacggcaagatggtcatggtcggcct 149
>gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_I10 5', mRNA sequence
Length = 509
Score = 139 bits (70), Expect = 2e-031
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 367 gaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaa 426
||||||||||||| | ||||| | ||||||||||||||| ||||| ||||||||| | |
Sbjct: 166 gaacaagaccctgtcagggagtttcatcggcggcatgagcgacacccaggagatgctgga 225
Query: 427 cgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaa 486
| | ||||| || || || |||||||| ||||| || || | |||||| ||||||||
Sbjct: 226 cctcgcggcgaaacatggtgtgacggcagacatcgaggtgatcagcgcggaatacgtgaa 285
Query: 487 cacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcgg 546
|||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||| ||
Sbjct: 286 cacggctatggagcgccttgccaaggcggacgtcaggtatcgattcgtcatcgacattgg 345
Query: 547 caacaccctc 556
||||||||||
Sbjct: 346 caacaccctc 355
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 220 gagcaccatggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacat 279
|||||||||||| |||||||| ||||||||||| || ||| || || ||||||| | |
Sbjct: 19 gagcaccatggatggcatcataaacacggtgtctgcaaacatccccatggcccctctctt 78
Query: 280 gggcctgctcaagcccaacggcaagatgatcatggtcggcct 321
|| || ||||||||||||||||||||| |||||||||||||
Sbjct: 79 cgggctactcaagcccaacggcaagatggtcatggtcggcct 120
>gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_D17 5', mRNA sequence
Length = 441
Score = 139 bits (70), Expect = 2e-031
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 367 gaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaa 426
||||||||||||| | ||||| | ||||||||||||||| ||||| ||||||||| | |
Sbjct: 156 gaacaagaccctgtcagggagtttcatcggcggcatgagcgacacccaggagatgctgga 215
Query: 427 cgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaa 486
| | ||||| ||||| || |||||||| ||||| || || | |||||| ||||||||
Sbjct: 216 cctcgcggcgaagcatggtgtgacggcagacatcgaggtgatcagcgcggaatacgtgaa 275
Query: 487 cacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcgg 546
|||||| ||||||||||| ||||| || ||||||||||| || |||||||||||||| ||
Sbjct: 276 cacggctatggagcgccttgccaaagcggacgtcaggtatcgattcgtcatcgacattgg 335
Query: 547 caacaccctc 556
||||||||||
Sbjct: 336 caacaccctc 345
Score = 83.8 bits (42), Expect = 1e-014
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 220 gagcaccatggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacat 279
|||||||||||| |||||||| ||||||||||| || ||| || || ||||||| | |
Sbjct: 9 gagcaccatggatggcatcataaacacggtgtctgcaaacatccccatggcccctctctt 68
Query: 280 gggcctgctcaagcccaacggcaagatgatcatggtcggcct 321
|| || ||||||||||||||||||||| |||||||||||||
Sbjct: 69 cgggctactcaagcccaacggcaagatggtcatggtcggcct 110
>gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0022N15f, mRNA sequence
Length = 787
Score = 125 bits (63), Expect = 3e-027
Identities = 195/239 (81%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| ||||||||||||| |||| || | || || || || || ||||||
Sbjct: 328 acggcctcaacgcgccggggaagcacctcggagtcgtcggcctcgggggtctcggccaca 387
Query: 78 tcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctg 137
| ||||||||||||| ||||||||||||| | ||||| || |||||| |||||||
Sbjct: 388 tggccgtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcgtcgccga 447
Query: 138 ggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacg 197
||||| ||||||||||||| || || ||||||||||| ||| | |||||| ||||||
Sbjct: 448 ggaagcgcgaggaggcgctcgagcgcctcggcgccgacgcgttcttggtcagccaggacg 507
Query: 198 ccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
|||| |||||||||| || ||| | || ||||||||||||||| ||||||||||||||
Sbjct: 508 ccgagcaaatgaaggctgcggcggggacgatggacggcatcatcgacacggtgtcggcg 566
>gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005J24f, mRNA sequence
Length = 595
Score = 125 bits (63), Expect = 3e-027
Identities = 195/239 (81%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| ||||||||||||| |||| || | || || || || || ||||||
Sbjct: 150 acggcctcaacgcgccggggaagcacctcggagtcgtcggcctcgggggtctcggccaca 209
Query: 78 tcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctg 137
| ||||||||||||| ||||||||||||| | ||||| || |||||| |||||||
Sbjct: 210 tggccgtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcgtcgccga 269
Query: 138 ggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacg 197
||||| ||||||||||||| || || ||||||||||| ||| | |||||| ||||||
Sbjct: 270 ggaagcgcgaggaggcgctcgagcgcctcggcgccgacgcgttcttggtcagccaggacg 329
Query: 198 ccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
|||| |||||||||| || ||| | || ||||||||||||||| ||||||||||||||
Sbjct: 330 ccgagcaaatgaaggctgcggcggggacgatggacggcatcatcgacacggtgtcggcg 388
>gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D12f, mRNA sequence
Length = 694
Score = 123 bits (62), Expect = 1e-026
Identities = 194/238 (81%)
Strand = Plus / Plus
Query: 19 cggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacgt 78
|||||| |||| |||||| |||||| | |||||| | || || || ||||| |||||| |
Sbjct: 425 cggcctcaacgcgccgggcaagcacctgggcgtggtcggcctcgggggcctcggccacat 484
Query: 79 cgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctgg 138
|| |||||||||| ||||||||||||| | ||||| || |||||| ||||||| |
Sbjct: 485 ggcagtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcgtcgccgag 544
Query: 139 gaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgc 198
|||| |||||||| || | ||||||||||||||||| ||| | |||||| | ||| |
Sbjct: 545 gaagcgcgaggaggcggtcaagcggcttggcgccgacgcgttcttggtcagccaagaccc 604
Query: 199 cgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
||| ||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 605 cgagcaaatgaaggcggcggcgggcacgatggacggcatcatcgacacggtgtcggcg 662
>gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005A06f, mRNA sequence
Length = 994
Score = 117 bits (59), Expect = 8e-025
Identities = 194/239 (81%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| |||||||||||| |||| || | || || || || || ||||||
Sbjct: 97 acggcctcaacgccccggggaagcacctcggagtcgtcggcctcgggggtctcggccaca 156
Query: 78 tcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctg 137
| ||||||||||||| ||||||||||||| | ||||| || |||||| |||||||
Sbjct: 157 tggccgtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcgtcgccga 216
Query: 138 ggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacg 197
||||| ||||||||||||| || || ||||||||||| ||| | |||||| ||||||
Sbjct: 217 ggaagcgcgaggaggcgctcgagcgcctcggcgccgacgcgttcttggtcagccaggacg 276
Query: 198 ccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
|||| |||||||||| || ||| | || ||||||||||||||| ||||||||||||||
Sbjct: 277 ccgagcaaatgaaggctgcggcggggacgatggacggcatcatcgacacggtgtcggcg 335
>gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 5', mRNA sequence
Length = 616
Score = 115 bits (58), Expect = 3e-024
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 71 ggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacg 130
|||||| | ||||||||||||| ||||||||||||| | ||||| || |||||| ||
Sbjct: 20 ggccacatggccgtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcg 79
Query: 131 tcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagc 190
||||| ||||| ||||||||||||| || || ||||||||||| ||| | ||||||
Sbjct: 80 tcgccgaggaagcgcgaggaggcgctcgagcgcctcggcgccgacgcgttcttggtcagc 139
Query: 191 aaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtg 250
|||||||||| |||||||||| || ||| | || ||||||||||||||| ||||||||
Sbjct: 140 caggacgccgagcaaatgaaggctgcggcggggacgatggacggcatcatcgacacggtg 199
Query: 251 tcggcg 256
||||||
Sbjct: 200 tcggcg 205
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 515 gacgtcaggtaccgcttcgtcatcgac 541
||||| |||||||||||||||||||||
Sbjct: 464 gacgtgaggtaccgcttcgtcatcgac 490
>gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_P23 5', mRNA sequence
Length = 568
Score = 115 bits (58), Expect = 3e-024
Identities = 193/238 (81%)
Strand = Plus / Plus
Query: 19 cggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacgt 78
||||||||||| ||||||||||||| | ||||| | || || || ||||| ||||||||
Sbjct: 218 cggcctgaacgcgccggggaagcacctgggcgtcgtcggcctcgggggcctcggccacgt 277
Query: 79 cgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctgg 138
|||||||||||||| |||||||||||| |||||| ||||||||||| ||||| ||
Sbjct: 278 cgccgtcaagttcggcaaggcgttcggcatgcgggtcaccgtcatcagcacctcgcccgg 337
Query: 139 gaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgc 198
|||| |||||||||| || ||||| ||||| |||| ||| | || ||| |||| |
Sbjct: 338 gaagcgcgaggaggcgctggagcggctgggcgcggacgagttcctggtgagccgggaccc 397
Query: 199 cgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
||| | ||| ||||||| | | ||||||||||||||||| || ||||||||||||||
Sbjct: 398 cgagcagatgcaggcggccgtgggcaccatggacggcatcctcgacacggtgtcggcg 455
>gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O19
5-PRIME, mRNA sequence
Length = 595
Score = 115 bits (58), Expect = 3e-024
Identities = 193/238 (81%)
Strand = Plus / Plus
Query: 19 cggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacgt 78
||||||||||| ||||||||||||| | ||||| | || || || ||||| ||||||||
Sbjct: 222 cggcctgaacgcgccggggaagcacctgggcgtcgtcggcctcgggggcctcggccacgt 281
Query: 79 cgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctgg 138
|||||||||||||| |||||||||||| |||||| ||||||||||| ||||| ||
Sbjct: 282 cgccgtcaagttcggcaaggcgttcggcatgcgggtcaccgtcatcagcacctcgcccgg 341
Query: 139 gaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgc 198
|||| |||||||||| || ||||| ||||| |||| ||| | || ||| |||| |
Sbjct: 342 gaagcgcgaggaggcgctggagcggctgggcgcggacgagttcctggtgagccgggaccc 401
Query: 199 cgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
||| | ||| ||||||| | | ||||||||||||||||| || ||||||||||||||
Sbjct: 402 cgagcagatgcaggcggccgtgggcaccatggacggcatcctcgacacggtgtcggcg 459
>gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012A06f, mRNA sequence
Length = 852
Score = 113 bits (57), Expect = 1e-023
Identities = 147/177 (83%)
Strand = Plus / Plus
Query: 80 gccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctggg 139
||||||||||||| ||||||||||||| | ||||| || |||||| ||||||| ||
Sbjct: 14 gccgtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcgtcgccgagg 73
Query: 140 aagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgcc 199
||| ||||||||||||| || || ||||||||||| ||| | |||||| ||||||||
Sbjct: 74 aagcgcgaggaggcgctcgagcgcctcggcgccgacgcgttcttggtcagccaggacgcc 133
Query: 200 gaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
|| |||||||||| || ||| | || ||||||||||||||| ||||||||||||||
Sbjct: 134 gagcaaatgaaggctgcggcggggacgatggacggcatcatcgacacggtgtcggcg 190
Score = 46.1 bits (23), Expect = 0.003
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 475 ggactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgt 534
|||||||||||||||||| | ||||| |||| ||| ||||| ||| ||||||||||
Sbjct: 409 ggactacgtgaacacggcggtcgagcggctggagaagaacgacgtgagggaccgcttcgt 468
Query: 535 catcgac 541
|||||||
Sbjct: 469 catcgac 475
>gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. vulgare cDNA clone HA13H23
5-PRIME, mRNA sequence
Length = 476
Score = 105 bits (53), Expect = 3e-021
Identities = 119/141 (84%)
Strand = Plus / Plus
Query: 106 ggccaaggtcacggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggct 165
||||||||| || || |||||||||||||| |||||| | |||||||||| || |||||
Sbjct: 15 ggccaaggtgaccgtgatcagcacgtcgcccgggaagcgggaggaggcgctggagcggct 74
Query: 166 tggcgccgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcac 225
||||||||||| |||||| |||||| ||||||| || |||||||| || | | ||||
Sbjct: 75 gggcgccgacgcgttcgtcctcagcacagacgccgcggagatgaaggccgccgtgggcac 134
Query: 226 catggacggcatcatcaacac 246
|||| ||||||||||||||||
Sbjct: 135 catgcacggcatcatcaacac 155
Score = 99.6 bits (50), Expect = 2e-019
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 482 gtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgac 541
||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 391 gtgaacaaggcaatggagcgcctggccaagggcgacgtcaggtaccgcttcgtcatcgac 450
Query: 542 atcggcaacaccctcaag 559
|||| |||||| |||||
Sbjct: 451 gtcggtaacaccatcaag 468
Score = 42.1 bits (21), Expect = 0.040
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 370 caagaccctggccgggagctgcatcggcg-gcatgagggacacgcaggagatg 421
|||||| ||||||||||||||||| |||| |||| || || ||||||||||||
Sbjct: 279 caagactctggccgggagctgcat-ggcgagcatcagcgagacgcaggagatg 330
>gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003A09f, mRNA sequence
Length = 482
Score = 99.6 bits (50), Expect = 2e-019
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 147 aggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgccgaagaaa 206
|||||||| || | ||||||||||||||||| ||| | |||||| | ||| |||| |||
Sbjct: 34 aggaggcggtcaagcggcttggcgccgacgcgttcttggtcagccaagaccccgagcaaa 93
Query: 207 tgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
|||||||||| ||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 94 tgaaggcggcggcgggcacgatggacggcatcatcgacacggtgtcggcg 143
>gb|BU994106.1|BU994106 HM05M03r HM Hordeum vulgare subsp. vulgare cDNA clone HM05M03
5-PRIME, mRNA sequence
Length = 648
Score = 95.6 bits (48), Expect = 3e-018
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
||||||||||||||||||||| |||||||| || ||| |||| | |||||| |||| ||
Sbjct: 517 cagccccatgaagtaccacgggctgaacgttcccgggttgcaccttggcgtgctgggact 576
Query: 61 gggaggcctgggccacgtcgccgtcaagttcg 92
||| || |||||||||||||||||||||||||
Sbjct: 577 gggcggactgggccacgtcgccgtcaagttcg 608
>gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006J13f, mRNA sequence
Length = 864
Score = 87.7 bits (44), Expect = 7e-016
Identities = 153/188 (81%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 70 gggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcac 129
||||||| | || |||||||||| ||||||||||||| | ||||| || |||||| |
Sbjct: 15 gggccacatggcagtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctc 74
Query: 130 gtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcag 189
|||||| ||||| |||||||| || | ||||||||||||||||| ||| | |||||
Sbjct: 75 gtcgccgaggaagcgcgaggaggcggtcaagcggcttggcgccgacgcgttcttggtcag 134
Query: 190 caaggacgccgaagaaatgaaggc-ggctgcgagcaccatggacggcatcatcaacacgg 248
| | ||| |||| |||||||||| ||| ||| |||| |||||||||||||| ||||||
Sbjct: 135 ccaagaccccgagcaaatgaaggctggcggcgggcacgatggacggcatcatttacacgg 194
Query: 249 tgtcggcg 256
||||||||
Sbjct: 195 tgtcggcg 202
>gb|AL504577.1|AL504577 AL504577 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05L10V 5', mRNA sequence
Length = 530
Score = 83.8 bits (42), Expect = 1e-014
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 56 gggctgggaggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtc 115
|||||||| || ||||||||| ||||||||||||||| ||||||||||||| | |||
Sbjct: 287 gggctgggcgggctgggccacatcgccgtcaagttcggcaaggcgttcgggctgcacgtc 346
Query: 116 acggtcatcagcacgtcgcctgggaagaagcaggaggc 153
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 347 acggtgatcagcacgtcgccggccaaggagcaggaggc 384
>gb|BJ549631.1|BJ549631 BJ549631 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k08 3', mRNA sequence
Length = 587
Score = 81.8 bits (41), Expect = 5e-014
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 496 ggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaacaccct 555
||||||||| |||||||| ||||||||||| || |||||||||||||| |||||||||||
Sbjct: 587 ggagcgccttgccaaggcggacgtcaggtatcgattcgtcatcgacattggcaacaccct 528
Query: 556 c 556
|
Sbjct: 527 c 527
>gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006E02f, mRNA sequence
Length = 602
Score = 77.8 bits (39), Expect = 7e-013
Identities = 138/171 (80%)
Strand = Plus / Plus
Query: 82 cgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctgggaa 141
||||||||||| ||||||||||||| | ||||| || |||||| ||||||| ||||
Sbjct: 286 cgtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcgtcgccgaggaa 345
Query: 142 gaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgccga 201
| ||||||||||||| || ||||| |||||||| ||| | |||||| ||||||||||
Sbjct: 346 gcgcgaggaggcgctcgagcgccttggagccgacgcgttcttggtcagccaggacgccga 405
Query: 202 agaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtc 252
| ||||| || |||||| || ||||||||||||||| |||| |||||
Sbjct: 406 gcacatgaatgctgctgcggcgacgatggacggcatcatcgacactgtgtc 456
>gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011B06f, mRNA sequence
Length = 1173
Score = 77.8 bits (39), Expect = 7e-013
Identities = 189/239 (79%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| ||||||||||||| |||| || | | || || || || ||||||
Sbjct: 96 acggcctcaacgcgccggggaagcacctcggagtcctcagcctcgggggtctcggccaca 155
Query: 78 tcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctg 137
| ||||||||||||| |||||||||| || | ||||| || |||||| |||||||
Sbjct: 156 tggccgtcaagttcggcaaggcgttctggatgaccgtcaccgtgatcagctcgtcgccga 215
Query: 138 ggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacg 197
||||| | || |||||||| || || |||||||||| ||| | |||||| ||||||
Sbjct: 216 ggaagcgcgaagaagcgctcgagcgcctctgcgccgacgcgttcttggtcagccaggacg 275
Query: 198 ccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
|||| ||||||| || |||||| | || |||||| |||||||| ||||||||||||||
Sbjct: 276 ccgagcaaatgaaagctgctgcggggacgatggacagcatcatcgacacggtgtcggcg 334
>gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L07f, mRNA sequence
Length = 643
Score = 73.8 bits (37), Expect = 1e-011
Identities = 181/229 (79%)
Strand = Plus / Plus
Query: 19 cggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacgt 78
|||||| |||| |||||| |||||| | |||||| | || || || ||||| |||||| |
Sbjct: 245 cggcctcaacgcgccgggcaagcacctgggcgtggtcggcctcgggggcctcggccacat 304
Query: 79 cgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctgg 138
|| |||||||||| ||||||||||||| | ||||| || |||||| ||||||| |
Sbjct: 305 ggcagtcaagttcggcaaggcgttcgggatgaccgtcaccgtgatcagctcgtcgccgag 364
Query: 139 gaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgc 198
|||| |||||||| || | ||||||||||||||| | ||| | |||||| | || |
Sbjct: 365 gaagcgcgaggaggcggtcaagcggcttggcgccgactcgttcttggtcagccaataccc 424
Query: 199 cgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacg 247
||| ||||||| ||||| ||| ||||||||||| | |||||| |||||
Sbjct: 425 cgagcaaatgaatgcggcggcgggcaccatggacagtatcatcgacacg 473
>gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. vulgare cDNA clone HS05A02
3-PRIME, mRNA sequence
Length = 513
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 185 gtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaac 244
|||||| |||||||||| |||||||||| || ||| | || ||||||||||||||| ||
Sbjct: 512 gtcagccaggacgccgagcaaatgaaggctgcggcggggacgatggacggcatcatcgac 453
Query: 245 acggtgtcggcg 256
||||||||||||
Sbjct: 452 acggtgtcggcg 441
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 515 gacgtcaggtaccgcttcgtcatcgac 541
||||| |||||||||||||||||||||
Sbjct: 182 gacgtgaggtaccgcttcgtcatcgac 156
>gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. vulgare cDNA clone HP02P10
3-PRIME, mRNA sequence
Length = 667
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 83 gtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcc 135
|||||||||| |||||| |||||| ||||||||| |||||||||||||||||
Sbjct: 667 gtcaagttcggcaaggccttcgggctcaaggtcaccgtcatcagcacgtcgcc 615
Score = 42.1 bits (21), Expect = 0.040
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 395 ggcggcatgagggacacgcaggagatgat 423
|||||||||| ||| ||||||||||||||
Sbjct: 355 ggcggcatgaaggagacgcaggagatgat 327
>gb|BF623534.2|BF623534 HVSMEa0002J16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002J16f, mRNA sequence
Length = 834
Score = 61.9 bits (31), Expect = 4e-008
Identities = 154/195 (78%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| ||||||||||||| | || || | || || ||||| || ||||||
Sbjct: 579 acggcctcaacgcgccggggaagcaccttggagtcgtcggcctcggaggtctcggccaca 638
Query: 78 tcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctg 137
| ||||||||||||| ||||||||||||| | ||||| | |||||| |||||||
Sbjct: 639 tggccgtcaagttcggcaaggcgttcgggatgaccgtcaccgggatcagctcgtcgccga 698
Query: 138 ggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacg 197
||||| |||||||||| || || ||| |||||||||| ||| | || ||| |||||
Sbjct: 699 ggaagcgcgaggaggcgcttgaacgcctttgcgccgacgcgttcttggtaagccaggacc 758
Query: 198 ccgaagaaatgaagg 212
||||| |||||||||
Sbjct: 759 ccgaacaaatgaagg 773
>gb|CK125801.1|CK125801 BES1824110n12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N1210 5-PRIME, mRNA sequence
Length = 795
Score = 61.9 bits (31), Expect = 4e-008
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 4 ccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggctggg 63
|||||||||||||| ||| |||||||| || ||| |||| | |||||| |||| |||||
Sbjct: 654 ccccatgaagtaccccgggctgaacgttcccgggttgcaccttggcgtgctgggactggg 713
Query: 64 aggcctgggccacgtcgccgtcaagttcg 92
|| |||| |||| || ||||||||||||
Sbjct: 714 nggactggnccacttccccgtcaagttcg 742
>gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_G19 5', mRNA sequence
Length = 421
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 147 aggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacgccgaagaaa 206
||||||||||||| || || ||||||||||| ||| | |||||| |||||||||| |||
Sbjct: 60 aggaggcgctcgagcgcctcggcgccgacgcgttcttggtcagccaggacgccgagcaaa 119
Query: 207 tgaagg 212
||||||
Sbjct: 120 tgaagg 125
Score = 52.0 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 227 atggacggcatcatcaacacggtgtcggcg 256
||||||||||||||| ||||||||||||||
Sbjct: 235 atggacggcatcatcgacacggtgtcggcg 264
>gb|BI947290.1|BI947290 HVSMEl0005A16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005A16f, mRNA sequence
Length = 1005
Score = 58.0 bits (29), Expect = 7e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 224 accatggacggcatcatcaacacggtgtcggcg 256
|||||||||||||||||| ||||||||||||||
Sbjct: 304 accatggacggcatcatcgacacggtgtcggcg 336
>gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 5', mRNA sequence
Length = 575
Score = 58.0 bits (29), Expect = 7e-007
Identities = 116/145 (80%)
Strand = Plus / Plus
Query: 112 ggtcacggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgc 171
|||||| || |||||||| ||||| |||||| |||||||||| || ||||| |||||
Sbjct: 14 ggtcaccgttatcagcacctcgcccgggaagcgcgaggaggcgctggagcggctgggcgc 73
Query: 172 cgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatgga 231
|||| ||| | || ||| |||| |||| | ||| ||||||| | | ||||||||||
Sbjct: 74 ggacgagttcctggtgagccgggaccccgagcagatgcaggcggccgtgggcaccatgga 133
Query: 232 cggcatcatcaacacggtgtcggcg 256
||||||| || ||||||||||||||
Sbjct: 134 cggcatcctcgacacggtgtcggcg 158
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 515 gacgtcaggtaccgcttcgtcatcgacatcg 545
|||||| | ||||||||||||||||||||||
Sbjct: 417 gacgtccgctaccgcttcgtcatcgacatcg 447
>gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 3', mRNA sequence
Length = 554
Score = 58.0 bits (29), Expect = 7e-007
Identities = 116/145 (80%)
Strand = Plus / Minus
Query: 112 ggtcacggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgc 171
|||||| || |||||||| ||||| |||||| |||||||||| || ||||| |||||
Sbjct: 541 ggtcaccgttatcagcacctcgcccgggaagcgcgaggaggcgctggagcggctgggcgc 482
Query: 172 cgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatgga 231
|||| ||| | || ||| |||| |||| | ||| ||||||| | | ||||||||||
Sbjct: 481 ggacgagttcctggtgagccgggaccccgagcagatgcaggcggccgtgggcaccatgga 422
Query: 232 cggcatcatcaacacggtgtcggcg 256
||||||| || ||||||||||||||
Sbjct: 421 cggcatcctcgacacggtgtcggcg 397
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 515 gacgtcaggtaccgcttcgtcatcgacatcg 545
|||||| | ||||||||||||||||||||||
Sbjct: 138 gacgtccgctaccgcttcgtcatcgacatcg 108
>gb|BI777453.2|BI777453 EBro04_SQ001_E09_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_E09 5', mRNA sequence
Length = 432
Score = 58.0 bits (29), Expect = 7e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| ||||||||||||| |||| || | || || || || || ||||||
Sbjct: 315 acggcctcaacgcgccggggaagcacctcggagtcgtcggcctcgggggtctcggccaca 374
Query: 78 tcgccgtcaagttcgccaaggcgttcggg 106
| ||||||||||||| |||||||||||||
Sbjct: 375 tggccgtcaagttcggcaaggcgttcggg 403
>gb|CB877686.1|CB877686 HP05N08T HP Hordeum vulgare subsp. vulgare cDNA clone HP05N08
5-PRIME, mRNA sequence
Length = 266
Score = 58.0 bits (29), Expect = 7e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| ||||||||||||| |||| || | || || || || || ||||||
Sbjct: 156 acggcctcaacgcgccggggaagcacctcggagtcgtcggcctcgggggtctcggccaca 215
Query: 78 tcgccgtcaagttcgccaaggcgttcggg 106
| ||||||||||||| |||||||||||||
Sbjct: 216 tggccgtcaagttcggcaaggcgttcggg 244
>gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36m01 3', mRNA sequence
Length = 222
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 222 gcaccatggacggcatcatcaacacggtgtcggcg 256
||||||||||||||||| || ||||||||||||||
Sbjct: 162 gcaccatggacggcatcctcgacacggtgtcggcg 128
>gb|BI777594.2|BI777594 EBro04_SQ001_L05_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_L05 5', mRNA sequence
Length = 411
Score = 50.1 bits (25), Expect = 2e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||| ||||||||||||| |||| || | || || || || || ||||||
Sbjct: 298 acggcctcaacgcgccggggaagcacctcggagtcgtcggcctcgggggtctcggccaca 357
Query: 78 tcgccgtcaagttcgccaaggcgttcggg 106
| |||||||||||| |||||||||||||
Sbjct: 358 tggccgtcaagttccgcaaggcgttcggg 386
>gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01P08u 3', mRNA sequence
Length = 248
Score = 48.1 bits (24), Expect = 6e-004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 515 gacgtcaggtaccgcttcgtcatcgacatcg 545
||||| ||||||||||||||||||||| |||
Sbjct: 204 gacgtgaggtaccgcttcgtcatcgacntcg 174
>gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015I24f, mRNA sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 515 gacgtcaggtaccgcttcgtcatcgac 541
||||| |||||||||||||||||||||
Sbjct: 220 gacgtgaggtaccgcttcgtcatcgac 246
>gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L10f, mRNA sequence
Length = 647
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 515 gacgtcaggtaccgcttcgtcatcgacatcg 545
|||||| | ||||||||||||||||||||||
Sbjct: 194 gacgtccgctaccgcttcgtcatcgacatcg 224
>gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016L11f, mRNA sequence
Length = 758
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 515 gacgtcaggtaccgcttcgtcatcgac 541
||||| |||||||||||||||||||||
Sbjct: 398 gacgtgaggtaccgcttcgtcatcgac 372
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 231 acggcatcatcaacacggtgtcggcg 256
|||||||||| |||||||||||||||
Sbjct: 682 acggcatcattaacacggtgtcggcg 657
>gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 3', mRNA sequence
Length = 550
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 515 gacgtcaggtaccgcttcgtcatcgac 541
||||| |||||||||||||||||||||
Sbjct: 320 gacgtgaggtaccgcttcgtcatcgac 294
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,527
Number of Sequences: 312970
Number of extensions: 140527
Number of successful extensions: 39453
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39291
Number of HSP's gapped (non-prelim): 133
length of query: 1137
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1118
effective length of database: 169,188,109
effective search space: 189152305862
effective search space used: 189152305862
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)