BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923171.2.1
(570 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF065280.1|BF065280 HV_CEb0012A03f Hordeum vulgare seedl... 48 3e-004
gb|BE215618.2|BE215618 HV_CEb0007D24f Hordeum vulgare seedl... 48 3e-004
gb|BE216624.3|BE216624 HV_CEb0010P20f Hordeum vulgare seedl... 48 3e-004
gb|CA021627.1|CA021627 HZ40K04r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|BQ466719.1|BQ466719 HS01F21T HS Hordeum vulgare subsp. v... 42 0.019
>gb|BF065280.1|BF065280 HV_CEb0012A03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012A03f, mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 3e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || | || ||||||||||||
Sbjct: 237 ggcgtgggtgccggacccggtgaccggttactaccggccgtcgggcgccgccaaggaggt 296
Query: 338 tgacgcggcggagctacgcgccaagctg 365
|||||||| || | ||||||||||||
Sbjct: 297 ggacgcggctgacttgcgcgccaagctg 324
Score = 42.1 bits (21), Expect = 0.019
Identities = 44/51 (86%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 110 cagcctcctagcacaaagcaggagggcctacactgtggccgcggccatggc 160
||||||||| |||||||| ||||| |||| ||| |||||||||||||||
Sbjct: 87 cagcctcctcgcacaaag---gaggggctactctgcggccgcggccatggc 134
>gb|BE215618.2|BE215618 HV_CEb0007D24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007D24f, mRNA sequence
Length = 524
Score = 48.1 bits (24), Expect = 3e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || | || ||||||||||||
Sbjct: 249 ggcgtgggtgccggacccggtgaccggttactaccggccgtcgggcgccgccaaggaggt 308
Query: 338 tgacgcggcggagctacgcgccaagctg 365
|||||||| || | ||||||||||||
Sbjct: 309 ggacgcggctgacttgcgcgccaagctg 336
Score = 42.1 bits (21), Expect = 0.019
Identities = 44/51 (86%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 110 cagcctcctagcacaaagcaggagggcctacactgtggccgcggccatggc 160
||||||||| |||||||| ||||| |||| ||| |||||||||||||||
Sbjct: 99 cagcctcctcgcacaaag---gaggggctactctgcggccgcggccatggc 146
>gb|BE216624.3|BE216624 HV_CEb0010P20f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010P20f, mRNA sequence
Length = 668
Score = 48.1 bits (24), Expect = 3e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || | || ||||||||||||
Sbjct: 246 ggcgtgggtgccggacccggtgaccggttactaccggccgtcgggcgccgccaaggaggt 305
Query: 338 tgacgcggcggagctacgcgccaagctg 365
|||||||| || | ||||||||||||
Sbjct: 306 ggacgcggctgacttgcgcgccaagctg 333
Score = 42.1 bits (21), Expect = 0.019
Identities = 44/51 (86%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 110 cagcctcctagcacaaagcaggagggcctacactgtggccgcggccatggc 160
||||||||| |||||||| ||||| |||| ||| |||||||||||||||
Sbjct: 96 cagcctcctcgcacaaag---gaggggctactctgcggccgcggccatggc 143
>gb|CA021627.1|CA021627 HZ40K04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40K04
5-PRIME, mRNA sequence
Length = 661
Score = 48.1 bits (24), Expect = 3e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 278 ggcgtgggtgccggaccctgtcaccggctactatcgcccagcaggtagcgccaaggaggt 337
|||||||||||||||||| || ||||| ||||| || || | || ||||||||||||
Sbjct: 253 ggcgtgggtgccggacccggtgaccggttactaccggccgtcgggcgccgccaaggaggt 312
Query: 338 tgacgcggcggagctacgcgccaagctg 365
|||||||| || | ||||||||||||
Sbjct: 313 ggacgcggctgacttgcgcgccaagctg 340
Score = 42.1 bits (21), Expect = 0.019
Identities = 44/51 (86%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 110 cagcctcctagcacaaagcaggagggcctacactgtggccgcggccatggc 160
||||||||| |||||||| ||||| |||| ||| |||||||||||||||
Sbjct: 103 cagcctcctcgcacaaag---gaggggctactctgcggccgcggccatggc 150
>gb|BQ466719.1|BQ466719 HS01F21T HS Hordeum vulgare subsp. vulgare cDNA clone HS01F21
5-PRIME, mRNA sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.019
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 280 cgtgggtgccggaccctgtcaccgg 304
|||||||||| ||||||||||||||
Sbjct: 277 cgtgggtgcccgaccctgtcaccgg 301
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,235
Number of Sequences: 312970
Number of extensions: 73235
Number of successful extensions: 22405
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22392
Number of HSP's gapped (non-prelim): 13
length of query: 570
length of database: 175,134,539
effective HSP length: 19
effective length of query: 551
effective length of database: 169,188,109
effective search space: 93222648059
effective search space used: 93222648059
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)