BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838024.2.1
(529 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, wat... 379 e-104
gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, wat... 377 e-103
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 375 e-102
gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. v... 375 e-102
gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare s... 337 2e-091
gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare s... 317 2e-085
gb|BQ767749.1|BQ767749 EBro08_SQ009_B20_R root, 3 week, dro... 285 7e-076
gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedl... 270 4e-071
gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedl... 270 4e-071
gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedl... 270 4e-071
gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedl... 270 4e-071
gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedl... 270 4e-071
gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA li... 270 4e-071
gb|AV924203.1|AV924203 AV924203 K. Sato unpublished cDNA li... 270 4e-071
gb|AV927108.1|AV927108 AV927108 K. Sato unpublished cDNA li... 270 4e-071
gb|BJ463118.1|BJ463118 BJ463118 K. Sato unpublished cDNA li... 270 4e-071
gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, red... 270 4e-071
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 270 4e-071
gb|BF263162.2|BF263162 HV_CEa0006A01f Hordeum vulgare seedl... 262 1e-068
gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedl... 262 1e-068
gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedl... 256 6e-067
gb|BG300161.1|BG300161 HVSMEb0010K02f Hordeum vulgare seedl... 254 3e-066
gb|AV925293.1|AV925293 AV925293 K. Sato unpublished cDNA li... 224 2e-057
gb|BQ460993.1|BQ460993 HE01I24r HE Hordeum vulgare subsp. v... 224 2e-057
emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotr... 218 1e-055
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 216 6e-055
gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedl... 202 8e-051
gb|BF629934.2|BF629934 HVSMEb0007F23f Hordeum vulgare seedl... 202 8e-051
gb|AV916008.1|AV916008 AV916008 K. Sato unpublished cDNA li... 202 8e-051
gb|CA008408.1|CA008408 HU10N24r HU Hordeum vulgare subsp. v... 202 8e-051
gb|BI959766.1|BI959766 HVSMEn0021F17f Hordeum vulgare rachi... 188 1e-046
gb|BI958669.1|BI958669 HVSMEn0016C05f Hordeum vulgare rachi... 172 7e-042
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 172 7e-042
gb|BI958113.1|BI958113 HVSMEn0013H08f Hordeum vulgare rachi... 163 7e-039
gb|BI958667.1|BI958667 HVSMEn0016C03f Hordeum vulgare rachi... 163 7e-039
gb|BF259456.3|BF259456 HVSMEf0019C15f Hordeum vulgare seedl... 149 1e-034
gb|AL504934.1|AL504934 AL504934 Hordeum vulgare Barke roots... 147 4e-034
gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA li... 147 4e-034
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 147 4e-034
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 147 4e-034
gb|BF627429.2|BF627429 HVSMEb0004N10f Hordeum vulgare seedl... 137 4e-031
gb|BI956580.1|BI956580 HVSMEn0004E02f Hordeum vulgare rachi... 137 4e-031
gb|BG309526.2|BG309526 HVSMEc0010M24f Hordeum vulgare seedl... 137 4e-031
gb|BI956298.1|BI956298 HVSMEn0002B22f Hordeum vulgare rachi... 123 6e-027
gb|BI956297.1|BI956297 HVSMEn0002B20f Hordeum vulgare rachi... 121 2e-026
gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA li... 121 2e-026
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 121 2e-026
gb|BF625577.3|BF625577 HVSMEa0011I16f Hordeum vulgare seedl... 117 4e-025
gb|BU971950.1|BU971950 HB20C15r BC Hordeum vulgare subsp. v... 115 2e-024
gb|BF256171.2|BF256171 HVSMEf0008P16f Hordeum vulgare seedl... 111 2e-023
gb|BF254604.1|BF254604 HVSMEf0004H21f Hordeum vulgare seedl... 107 4e-022
gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Li... 105 1e-021
gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA li... 105 1e-021
gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA li... 105 1e-021
gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgar... 101 2e-020
gb|BF618271.2|BF618271 HVSMEc0005D16f Hordeum vulgare seedl... 96 1e-018
gb|CA024667.1|CA024667 HZ49P10r HZ Hordeum vulgare subsp. v... 92 2e-017
gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedl... 90 9e-017
gb|BI953155.1|BI953155 HVSMEm0011G01f Hordeum vulgare green... 88 3e-016
gb|BE216242.1|BE216242 HV_CEb0009P07f Hordeum vulgare seedl... 88 3e-016
gb|BF267606.1|BF267606 HV_CEa0018G10f Hordeum vulgare seedl... 88 3e-016
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 84 5e-015
gb|BI956177.1|BI956177 HVSMEm0025O16f Hordeum vulgare green... 80 8e-014
gb|CA019178.1|CA019178 HV11B18r HV Hordeum vulgare subsp. v... 80 8e-014
gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. v... 80 8e-014
gb|AL503674.1|AL503674 AL503674 Hordeum vulgare Barke roots... 72 2e-011
gb|BG309189.1|BG309189 HVSMEc0004M02f Hordeum vulgare seedl... 72 2e-011
gb|BI954358.1|BI954358 HVSMEm0017G17f Hordeum vulgare green... 72 2e-011
gb|BQ460689.1|BQ460689 HA06D17r HA Hordeum vulgare subsp. v... 72 2e-011
gb|BQ462553.1|BQ462553 HI01E04T HI Hordeum vulgare subsp. v... 72 2e-011
gb|BQ462594.1|BQ462594 HI01G12T HI Hordeum vulgare subsp. v... 72 2e-011
gb|BQ467526.1|BQ467526 HS04B01r HS Hordeum vulgare subsp. v... 72 2e-011
gb|BQ467575.1|BQ467575 HS04D13r HS Hordeum vulgare subsp. v... 72 2e-011
gb|BQ467998.1|BQ467998 HR01J18r HR Hordeum vulgare subsp. v... 72 2e-011
gb|BQ662128.1|BQ662128 HR01K20u HR Hordeum vulgare subsp. v... 72 2e-011
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 72 2e-011
gb|BU997685.1|BU997685 HI08L09r HI Hordeum vulgare subsp. v... 72 2e-011
gb|BU997928.1|BU997928 HI09H06r HI Hordeum vulgare subsp. v... 72 2e-011
gb|CA001720.1|CA001720 HS05G04r HS Hordeum vulgare subsp. v... 72 2e-011
gb|CA003718.1|CA003718 HS15F14r HS Hordeum vulgare subsp. v... 72 2e-011
gb|CA003908.1|CA003908 HS15O19r HS Hordeum vulgare subsp. v... 72 2e-011
gb|CA007079.1|CA007079 HU06K21r HU Hordeum vulgare subsp. v... 72 2e-011
gb|CA023472.1|CA023472 HZ46F16r HZ Hordeum vulgare subsp. v... 72 2e-011
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 72 2e-011
gb|BG365090.1|BG365090 HVSMEi0001D21f Hordeum vulgare 20 DA... 70 8e-011
gb|AW982395.1|AW982395 HVSMEg0003C13f Hordeum vulgare pre-a... 68 3e-010
gb|BG368127.1|BG368127 HVSMEi0015M23f Hordeum vulgare 20 DA... 68 3e-010
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 68 3e-010
gb|BM444292.1|BM444292 EBem09_SQ004_L15_R embryo, 1 Day ger... 66 1e-009
gb|BQ762342.1|BQ762342 EBro01_SQ005_F13_R root, 3 week, hyd... 66 1e-009
gb|BU998122.1|BU998122 HI10B03r HI Hordeum vulgare subsp. v... 66 1e-009
gb|CA031564.1|CA031564 HX10H03r HX Hordeum vulgare subsp. v... 66 1e-009
gb|CB883507.1|CB883507 HQ02H12w HQ Hordeum vulgare subsp. v... 66 1e-009
gb|BF624089.2|BF624089 HVSMEa0009G06f Hordeum vulgare seedl... 64 5e-009
gb|BF628305.2|BF628305 HVSMEb0003K21f Hordeum vulgare seedl... 64 5e-009
gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedl... 64 5e-009
gb|BF260946.2|BF260946 HVSMEf0023F18f Hordeum vulgare seedl... 64 5e-009
gb|BE060552.2|BE060552 HVSMEg0012J20f Hordeum vulgare pre-a... 64 5e-009
gb|BI957177.1|BI957177 HVSMEn0007P14f Hordeum vulgare rachi... 64 5e-009
gb|BI959592.1|BI959592 HVSMEn0020F05f Hordeum vulgare rachi... 64 5e-009
gb|BI960618.1|BI960618 HVSMEn0025G09f Hordeum vulgare rachi... 64 5e-009
gb|BE455947.3|BE455947 HVSMEg0017N10f Hordeum vulgare pre-a... 64 5e-009
gb|BQ463558.1|BQ463558 HI05L07r HI Hordeum vulgare subsp. v... 64 5e-009
gb|BQ462489.1|BQ462489 HI01A16T HI Hordeum vulgare subsp. v... 62 2e-008
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 60 8e-008
gb|AL450913.1|AL450913 AL450913 Hordeum vulgare Barke etiol... 58 3e-007
gb|AL500119.1|AL500119 AL500119 Hordeum vulgare Barke etiol... 58 3e-007
gb|AL500129.1|AL500129 AL500129 Hordeum vulgare Barke etiol... 58 3e-007
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 58 3e-007
gb|BI777946.1|BI777946 EBro07_SQ001_H07_R root, 3 week, red... 58 3e-007
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 58 3e-007
gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedl... 58 3e-007
gb|BF628380.2|BF628380 HVSMEb0003O02f Hordeum vulgare seedl... 58 3e-007
gb|BF629930.2|BF629930 HVSMEb0007F19f Hordeum vulgare seedl... 58 3e-007
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 58 3e-007
gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedl... 58 3e-007
gb|BG300865.1|BG300865 HVSMEb0018L19f Hordeum vulgare seedl... 58 3e-007
gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedl... 58 3e-007
gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedl... 58 3e-007
gb|BG343074.1|BG343074 HVSMEg0001P08f Hordeum vulgare pre-a... 58 3e-007
gb|BI958106.1|BI958106 HVSMEn0013G22f Hordeum vulgare rachi... 58 3e-007
gb|BQ461043.1|BQ461043 HE01F23r HE Hordeum vulgare subsp. v... 58 3e-007
gb|BQ462941.1|BQ462941 HI02H24r HI Hordeum vulgare subsp. v... 58 3e-007
gb|BQ470477.1|BQ470477 HX03B16r HX Hordeum vulgare subsp. v... 58 3e-007
gb|BM369898.2|BM369898 EBem07_SQ004_O19_R embryo, 28 DPA, n... 58 3e-007
gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, sal... 58 3e-007
gb|BQ764772.1|BQ764772 EBca01_SQ004_H24_R carpel, pre-anthe... 58 3e-007
gb|BQ764817.1|BQ764817 EBca01_SQ005_A06_R carpel, pre-anthe... 58 3e-007
gb|CA021189.1|CA021189 HZ39G03r HZ Hordeum vulgare subsp. v... 58 3e-007
gb|CA027653.1|CA027653 HZ59J16r HZ Hordeum vulgare subsp. v... 58 3e-007
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 58 3e-007
gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedl... 56 1e-006
gb|BF618504.2|BF618504 HVSMEc0005O01f Hordeum vulgare seedl... 56 1e-006
gb|BE195774.3|BE195774 HVSMEh0090G19f Hordeum vulgare 5-45 ... 56 1e-006
gb|BQ759958.1|BQ759958 EBpi05_SQ004_P23_R pistil, 8 DPA, no... 56 1e-006
gb|CA027287.1|CA027287 HZ58H04r HZ Hordeum vulgare subsp. v... 56 1e-006
gb|BF631401.2|BF631401 HVSMEb0015N09f Hordeum vulgare seedl... 54 5e-006
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 54 5e-006
gb|AL450643.1|AL450643 AL450643 Hordeum vulgare Barke etiol... 52 2e-005
gb|AL500197.1|AL500197 AL500197 Hordeum vulgare Barke etiol... 52 2e-005
gb|BI956709.1|BI956709 HVSMEn0004O06f Hordeum vulgare rachi... 52 2e-005
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 52 2e-005
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 52 2e-005
gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. v... 52 2e-005
gb|BF627004.2|BF627004 HVSMEb0001P03f Hordeum vulgare seedl... 50 7e-005
gb|BF629241.2|BF629241 HVSMEb0010H14f Hordeum vulgare seedl... 50 7e-005
gb|BF267800.2|BF267800 HV_CEa0018O20f Hordeum vulgare seedl... 50 7e-005
gb|BU997613.1|BU997613 HI08H24r HI Hordeum vulgare subsp. v... 50 7e-005
gb|CA020574.1|CA020574 HZ36L09r HZ Hordeum vulgare subsp. v... 50 7e-005
gb|CA024504.1|CA024504 HZ49H21r HZ Hordeum vulgare subsp. v... 50 7e-005
gb|AL500052.1|AL500052 AL500052 Hordeum vulgare Barke etiol... 48 3e-004
gb|BF629221.2|BF629221 HVSMEb0010F24f Hordeum vulgare seedl... 48 3e-004
gb|BF618456.2|BF618456 HVSMEc0005L21f Hordeum vulgare seedl... 48 3e-004
gb|BF618579.2|BF618579 HVSMEc0006G01f Hordeum vulgare seedl... 48 3e-004
gb|BF620035.2|BF620035 HVSMEc0011F01f Hordeum vulgare seedl... 48 3e-004
gb|BI960420.1|BI960420 HVSMEn0024I16f Hordeum vulgare rachi... 48 3e-004
gb|BF627685.3|BF627685 HVSMEb0005I10f Hordeum vulgare seedl... 48 3e-004
gb|BG309764.2|BG309764 HVSMEc0012H20f Hordeum vulgare seedl... 48 3e-004
gb|BE194552.3|BE194552 HVSMEh0085P21f Hordeum vulgare 5-45 ... 48 3e-004
gb|CA022401.1|CA022401 HZ43A12r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|AL450919.1|AL450919 AL450919 Hordeum vulgare Barke etiol... 46 0.001
gb|BF627541.2|BF627541 HVSMEb0005C03f Hordeum vulgare seedl... 46 0.001
gb|BG300155.1|BG300155 HVSMEb0010I18f Hordeum vulgare seedl... 46 0.001
gb|BF256789.2|BF256789 HVSMEf0011A08f Hordeum vulgare seedl... 46 0.001
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 46 0.001
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 46 0.001
gb|CB877582.1|CB877582 HP05H06T HP Hordeum vulgare subsp. v... 46 0.001
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 44 0.005
gb|BF623367.2|BF623367 HVSMEa0015K08f Hordeum vulgare seedl... 42 0.018
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 42 0.018
gb|BF254306.2|BF254306 HVSMEf0003J15f Hordeum vulgare seedl... 38 0.28
gb|BI956740.1|BI956740 HVSMEn0005A24f Hordeum vulgare rachi... 38 0.28
gb|BQ756159.1|BQ756159 EBem05_SQ001_P17_R embryo, 14 DPA, n... 38 0.28
gb|BU995418.1|BU995418 HM10D05r HM Hordeum vulgare subsp. v... 38 0.28
gb|CA018175.1|CA018175 HV07M23r HV Hordeum vulgare subsp. v... 38 0.28
gb|AF166121.1|AF166121 Hordeum vulgare Cf2/Cf5 disease resi... 38 0.28
>gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_J06 5', mRNA sequence
Length = 646
Score = 379 bits (191), Expect = e-104
Identities = 331/373 (88%), Gaps = 6/373 (1%)
Strand = Plus / Plus
Query: 151 tcaacacggacggcaccgtccgcacccagtacgacgcgtcggggcaggaggtggcgatgc 210
||||||||||||||||||||||||| |||||||| ||||| ||| |||||| |||||
Sbjct: 158 tcaacacggacggcaccgtccgcacgggatacgacgcctcgggccagcaggtggtgatgc 217
Query: 211 tcagcctggacc-gcagctccggcgccg---gcttcaact-ccaagaagcagtacctgta 265
||| ||| ||| ||| |||||||||| ||||||||| ||||| |||||||||| ||
Sbjct: 218 tcaacctcaaccagcaa-tccggcgccgccggcttcaacttccaagcagcagtacctcta 276
Query: 266 cggcgagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtg 325
|| ||||||||| ||||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct: 277 tggtgagttcagcatccagatgaagctcatcccggggaactccgctggcaccgtctcctg 336
Query: 326 cttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatggg 385
||||||||| || || || |||| ||| ||| |||||||||||||||||||||||||||
Sbjct: 337 cttctacctttcttccggtgacgacgagtggcgcgacgagatcgacatggagttcatggg 396
Query: 386 caacgcgagcgggcagccggtggtgctgaacacgaacgtgtgggccagcggcgacggcaa 445
|||| | ||||| || ||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 397 caactccagcggccatccggtggtgctcaacacgaacgtgtgggccaacggcgacggcaa 456
Query: 446 gaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccat 505
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 gaaggagcaccagttcgacctctggttcgaccccgccgccgactaccacacctacaccat 516
Query: 506 catctggaacccg 518
|||||||||||||
Sbjct: 517 catctggaacccg 529
>gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_J09 5', mRNA sequence
Length = 729
Score = 377 bits (190), Expect = e-103
Identities = 329/372 (88%), Gaps = 5/372 (1%)
Strand = Plus / Plus
Query: 151 tcaacacggacggcaccgtccgcacccagtacgacgcgtcggggcaggaggtggcgatgc 210
||||||| |||||||||||||||||| |||||||| ||||| ||| |||||| ||||
Sbjct: 154 tcaacaccgacggcaccgtccgcaccggatacgacgcctcgggccagcaggtggttatgc 213
Query: 211 tcagcctggacc-gcagctccggcgccggc---ttcaactccaagaagcagtacctgtac 266
||| ||| ||| ||| |||||||||| | |||||||||||| |||||||||| |||
Sbjct: 214 tcaacctcaaccagcaa-tccggcgccgccggattcaactccaagcagcagtacctctac 272
Query: 267 ggcgagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgc 326
|||||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 273 ggcgagttcagcatccagatgaagctcatcccgggaaactccgccggcaccgtctcctgc 332
Query: 327 ttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggc 386
|||||||| || || || |||| ||| ||| ||||||||||||||||||||||||||||
Sbjct: 333 ttctacctttcttccggtgacgacgagtggcgcgacgagatcgacatggagttcatgggc 392
Query: 387 aacgcgagcgggcagccggtggtgctgaacacgaacgtgtgggccagcggcgacggcaag 446
||| | ||||| || ||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 393 aactccagcggccacccggtggtgctcaacaccaacgtgtgggccaacggcgacggcaag 452
Query: 447 aaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatc 506
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 453 aaggagcaccagttcgacctctggttcgacccagccgcagactaccacacctacaccatc 512
Query: 507 atctggaacccg 518
||||||||||||
Sbjct: 513 atctggaacccg 524
>gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45I10
5-PRIME, mRNA sequence
Length = 518
Score = 375 bits (189), Expect = e-102
Identities = 243/261 (93%)
Strand = Plus / Plus
Query: 256 agtacctgtacggcgagttcagcgtccagatgaagctcatccccggcaactccgccggca 315
||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 29 agtacctctacggcgagttcagcatccagatgaagctcgtccccggcaactccgccggca 88
Query: 316 ccgtctcgtgcttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacatgg 375
||||| | | ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 89 ccgtcacctccttctacctgtcgtcgggcgacggccccgggcacgacgagatcgacatgg 148
Query: 376 agttcatgggcaacgcgagcgggcagccggtggtgctgaacacgaacgtgtgggccagcg 435
|||||||||||||| | | ||||||||||||||||| ||||| ||||||||||||| ||
Sbjct: 149 agttcatgggcaactccacggggcagccggtggtgctcaacaccaacgtgtgggccaacg 208
Query: 436 gcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccaca 495
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 209 gcgacggcaagaaggagcaccagttcgacctctggttcgacccggccgccgactaccaca 268
Query: 496 cctacaccatcatctggaacc 516
|||||||||||||||||||||
Sbjct: 269 cctacaccatcatctggaacc 289
>gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
5-PRIME, mRNA sequence
Length = 634
Score = 375 bits (189), Expect = e-102
Identities = 243/261 (93%)
Strand = Plus / Plus
Query: 256 agtacctgtacggcgagttcagcgtccagatgaagctcatccccggcaactccgccggca 315
||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 270 agtacctctacggcgagttcagcatccagatgaagctcgtccccggcaactccgccggca 329
Query: 316 ccgtctcgtgcttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacatgg 375
||||| | | ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 330 ccgtcacctccttctacctgtcgtcgggcgacggccccgggcacgacgagatcgacatgg 389
Query: 376 agttcatgggcaacgcgagcgggcagccggtggtgctgaacacgaacgtgtgggccagcg 435
|||||||||||||| | | ||||||||||||||||| ||||| ||||||||||||| ||
Sbjct: 390 agttcatgggcaactccacggggcagccggtggtgctcaacaccaacgtgtgggccaacg 449
Query: 436 gcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccaca 495
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 450 gcgacggcaagaaggagcaccagttcgacctctggttcgacccggccgccgactaccaca 509
Query: 496 cctacaccatcatctggaacc 516
|||||||||||||||||||||
Sbjct: 510 cctacaccatcatctggaacc 530
>gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E12_SK.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 858
Score = 337 bits (170), Expect = 2e-091
Identities = 324/372 (87%), Gaps = 5/372 (1%)
Strand = Plus / Plus
Query: 151 tcaacacggacggcaccgtccgcacccagtacgacgcgtcggggcaggaggtggcgatgc 210
||||||||||||| |||||||| || |||||||| ||||| ||| |||||| |||||
Sbjct: 192 tcaacacggacggtaccgtccgtacgggatacgacgcctcgggccagcaggtggtgatgc 251
Query: 211 tcagcctggacc-gcagctccgg---cgccggcttcaactccaagaagcagtacctgtac 266
||| ||| ||| ||| ||||| ||||||||||||||||||| | |||||||| ||
Sbjct: 252 tcaacctcaaccagca-atccggcgccgccggcttcaactccaagcaacagtacctctat 310
Query: 267 ggcgagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgc 326
|| ||||| ||| |||| |||||||||||||| || |||||||||||||||||||| |||
Sbjct: 311 ggtgagtttagcatccacatgaagctcatcccggggaactccgccggcaccgtctcctgc 370
Query: 327 ttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggc 386
|||||||| || || || |||| ||| ||| ||||||||||||||||||||||||||||
Sbjct: 371 ttctacctttcttccggtgacgacgagtggcgcgacgagatcgacatggagttcatgggc 430
Query: 387 aacgcgagcgggcagccggtggtgctgaacacgaacgtgtgggccagcggcgacggcaag 446
||| | | ||| || |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 431 aactccatcggccatacggtggtgctcaacacgaacgtgtgggccaacggcgacggcaag 490
Query: 447 aaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatc 506
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 491 aaggagcaccagttcgacctctggttcgaccccgccgacgactaccacacctacaccatc 550
Query: 507 atctggaacccg 518
||||||||||||
Sbjct: 551 atctggaacccg 562
>gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111H09_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 918
Score = 317 bits (160), Expect = 2e-085
Identities = 335/391 (85%), Gaps = 8/391 (2%)
Strand = Plus / Plus
Query: 135 tggctctacgacaaggtcaacacggacggcaccgtccgcacccagtacgacgcgtcgggg 194
|||||| | |||||| ||||||||||||||| ||||| || |||||||| || |||
Sbjct: 163 tggctcgatgacaagttcaacacggacggcaatgtccggacgggatacgacgcttctggg 222
Query: 195 caggaggtggcgatgctcagcctggacc-gcagctccggcgccggcttcaactccaagaa 253
||| |||||| || ||||||||| |||| ||| ||| |||||||||||||||||| | |
Sbjct: 223 cagcaggtggtgacgctcagcctcgaccagca-ctcaggcgccggcttcaactccgatga 281
Query: 254 gcagtacctgtacggcgagttcagcgtccagatgaagctcatccccggcaactccgccgg 313
||| ||||| ||||| ||||||||| ||||||||||||||||||| || ||||| |||||
Sbjct: 282 gcaatacctctacggtgagttcagcatccagatgaagctcatcccgggaaactcggccgg 341
Query: 314 caccgtctcgtgcttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacat 373
|||||| || ||||||||||| || || || || || |||||||||||||||||||||||
Sbjct: 342 caccgtatcctgcttctacctttcttccggtgatggagacgggcacgacgagatcgacat 401
Query: 374 ggagttcatgggcaacgcgag------cgggcagccggtggtgctgaacacgaacgtgtg 427
|||||||||||||||| | || || || ||||| ||||| ||||| ||||| ||
Sbjct: 402 ggagttcatgggcaactccagtggccctggccatccggtagtgctcaacaccaacgtctg 461
Query: 428 ggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccga 487
|| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 462 ggtcaacggcgatggcaagaaggagcaccagttcgacctctggttcgaccccgccgccga 521
Query: 488 ctaccacacctacaccatcatctggaacccg 518
|||||||||||||||||||||||||||||||
Sbjct: 522 ctaccacacctacaccatcatctggaacccg 552
>gb|BQ767749.1|BQ767749 EBro08_SQ009_B20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_B20 5', mRNA sequence
Length = 516
Score = 285 bits (144), Expect = 7e-076
Identities = 331/391 (84%), Gaps = 8/391 (2%)
Strand = Plus / Plus
Query: 135 tggctctacgacaaggtcaacacggacggcaccgtccgcacccagtacgacgcgtcgggg 194
|||||| | |||||| ||||||||||||||| ||||| || ||||||| || |||
Sbjct: 124 tggctcgatgacaagttcaacacggacggcaatgtccggacgggatacgacgtttctggg 183
Query: 195 caggaggtggcgatgctcagcctggacc-gcagctccggcgccggcttcaactccaagaa 253
||| | |||| || ||||||||| |||| ||| ||| ||||||||||||||||| | |
Sbjct: 184 cagcaagtggtgacgctcagcctcgaccagca-ctcaagcgccggcttcaactccgatga 242
Query: 254 gcagtacctgtacggcgagttcagcgtccagatgaagctcatccccggcaactccgccgg 313
||| ||||| ||||| ||||||||| ||||||||||||||||||| || ||||| |||||
Sbjct: 243 gcaatacctctacggtgagttcagcatccagatgaagctcatcccgggaaactcggccgg 302
Query: 314 caccgtctcgtgcttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacat 373
|||||| || ||||||||||| || || || || || |||||||||||||||||||||||
Sbjct: 303 caccgtatcctgcttctacctttcttccggtgatggagacgggcacgacgagatcgacat 362
Query: 374 ggagttcatgggcaacgcgag------cgggcagccggtggtgctgaacacgaacgtgtg 427
|||||||||||||||| | || || || ||||| ||||| ||||| ||||| ||
Sbjct: 363 ggagttcatgggcaactccagtggccctggccatccggtagtgctcaacaccaacgtctg 422
Query: 428 ggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccga 487
|| || |||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 423 ggtcaacggcgatggcaagaaggagcaccacttcgacctctggttcgaccccgccgccga 482
Query: 488 ctaccacacctacaccatcatctggaacccg 518
|||||||||||||||||||||||||||||||
Sbjct: 483 ctaccacacctacaccatcatctggaacccg 513
>gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009B18f, mRNA sequence
Length = 725
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 246 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 305
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 306 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 365
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 366 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 425
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 426 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 485
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 486 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 533
>gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012E18f, mRNA sequence
Length = 715
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 241 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 300
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 301 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 360
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 361 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 420
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 480
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 481 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 528
>gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014N08f, mRNA sequence
Length = 759
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 297
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 298 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 357
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 358 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 417
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 418 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 477
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 478 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 525
>gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015A04f, mRNA sequence
Length = 755
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 297
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 298 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 357
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 358 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 417
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 418 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 477
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 478 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 525
>gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020F14f, mRNA sequence
Length = 882
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 231 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 290
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 291 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 350
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 351 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 410
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 411 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 470
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 471 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 518
>gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 5', mRNA sequence
Length = 642
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 244 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 303
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 304 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 363
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 364 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 423
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 424 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 483
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 484 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 531
>gb|AV924203.1|AV924203 AV924203 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11l14 5', mRNA sequence
Length = 572
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 244 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 303
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 304 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 363
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 364 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 423
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 424 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 483
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 484 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 531
>gb|AV927108.1|AV927108 AV927108 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26m16 5', mRNA sequence
Length = 640
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 244 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 303
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 304 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 363
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 364 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 423
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 424 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 483
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 484 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 531
>gb|BJ463118.1|BJ463118 BJ463118 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25n11 5', mRNA sequence
Length = 613
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 219 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 278
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 279 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 338
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 339 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 398
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 399 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 458
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 459 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 506
>gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_F18 5', mRNA sequence
Length = 622
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 3 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 62
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 63 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 122
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 123 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 182
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 183 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 242
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 243 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 290
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 270 bits (136), Expect = 4e-071
Identities = 250/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 297
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 298 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 357
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 358 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 417
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 418 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 477
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 478 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 525
>gb|BF263162.2|BF263162 HV_CEa0006A01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006A01f, mRNA sequence
Length = 593
Score = 262 bits (132), Expect = 1e-068
Identities = 249/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 297
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 298 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 357
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 358 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 417
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 418 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 477
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||| ||||| ||||||||||| ||| ||||||||||
Sbjct: 478 gttcgaccccaccggcgacttccacacctacaagatcgtctggaaccc 525
>gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020K16f, mRNA sequence
Length = 901
Score = 262 bits (132), Expect = 1e-068
Identities = 249/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 239 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 298
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 299 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 358
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| |||||||||||||| ||||| | || ||
Sbjct: 359 cgacggccatgacgagatcgacatctagttcatgggcaacctcagcggcgacccctacgt 418
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 419 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 478
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 479 gttcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 526
>gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008D05f, mRNA sequence
Length = 817
Score = 256 bits (129), Expect = 6e-067
Identities = 248/288 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggngagttcagcgtccagatgaa 297
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 298 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 357
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 358 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 417
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 418 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 477
Query: 470 gttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||| ||| ||||| ||||||||||| ||| ||||||||||
Sbjct: 478 gttcgaccccaccggcgacttccacacctacaggatcgtctggaaccc 525
>gb|BG300161.1|BG300161 HVSMEb0010K02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010K02f, mRNA sequence
Length = 515
Score = 254 bits (128), Expect = 3e-066
Identities = 236/272 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 243 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 302
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 303 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 362
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 363 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 422
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 423 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 482
Query: 470 gttcgacccctccgccgactaccacacctaca 501
|||||||||| ||||||||| ||||||||||
Sbjct: 483 gttcgaccccaccgccgactttcacacctaca 514
>gb|AV925293.1|AV925293 AV925293 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j07 5', mRNA sequence
Length = 488
Score = 224 bits (113), Expect = 2e-057
Identities = 212/245 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 244 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 303
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 304 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 363
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 364 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 423
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 424 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 483
Query: 470 gttcg 474
|||||
Sbjct: 484 gttcg 488
>gb|BQ460993.1|BQ460993 HE01I24r HE Hordeum vulgare subsp. vulgare cDNA clone HE01I24
5-PRIME, mRNA sequence
Length = 465
Score = 224 bits (113), Expect = 2e-057
Identities = 212/245 (86%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 221 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 280
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 281 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 340
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || |||||||||||||| ||||||||||||||| ||||| | || ||
Sbjct: 341 cgacggccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgt 400
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 401 gatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctg 460
Query: 470 gttcg 474
|||||
Sbjct: 461 gttcg 465
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
Length = 1110
Score = 218 bits (110), Expect = 1e-055
Identities = 233/274 (85%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||||| |||||| ||||||| | |||||||||| |||| ||||
Sbjct: 212 tccggctccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatg 271
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgac 347
|||||| || |||||||||||||||||||||| | | ||||||||| | || |||||
Sbjct: 272 aagctcgtcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgag 331
Query: 348 ggcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtg 407
||| | ||||||||||||||||| ||||||||||||||| ||||||| | ||
Sbjct: 332 agcgccacccacgacgagatcgacatcgagttcatgggcaactcgagcggcgacccctac 391
Query: 408 gtgctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctc 467
||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 392 gtgatgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttctacctc 451
Query: 468 tggttcgacccctccgccgactaccacacctaca 501
|||||||||||||||||||||| |||||||||||
Sbjct: 452 tggttcgacccctccgccgacttccacacctaca 485
>gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001K09f, mRNA sequence
Length = 606
Score = 216 bits (109), Expect = 6e-055
Identities = 190/217 (87%)
Strand = Plus / Plus
Query: 299 cggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacggcgacgggca 358
|||||||||||||||||||||| | | ||||||||| |||| ||| ||| |||||
Sbjct: 1 cggcaactccgccggcaccgtcgcctccttctacctgtcgtttggcaacgagccggggca 60
Query: 359 cgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggtgctgaacac 418
||||||||||||||||||||||||||||||| | || |||||||||| ||| |||||
Sbjct: 61 cgacgagatcgacatggagttcatgggcaacagcacgggccagccggtggcgctcaacac 120
Query: 419 gaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgaccc 478
||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 121 caacgtgtgggccaacggcgacggcaagaaggagcagcagttctacctctggttcgaccc 180
Query: 479 ctccgccgactaccacacctacaccatcatctggaac 515
|||||| ||||||||||||||||||||||||||||
Sbjct: 181 ggccgccggctaccacacctacaccatcatctggaac 217
>gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003D18f, mRNA sequence
Length = 870
Score = 202 bits (102), Expect = 8e-051
Identities = 231/274 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||||| |||||| ||||||| | |||||||||| |||| ||||
Sbjct: 234 tccggctccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatg 293
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgac 347
|||||| || |||||||||||||||||||||| | | ||||||||| | || |||||
Sbjct: 294 aagctcgtcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgag 353
Query: 348 ggcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtg 407
||| | ||||||||||||||||| ||||||||||| ||| ||||||| | ||
Sbjct: 354 agcgccacccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctac 413
Query: 408 gtgctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctc 467
||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 414 gtgatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctc 473
Query: 468 tggttcgacccctccgccgactaccacacctaca 501
|||||||||||||||||||||| |||||||||||
Sbjct: 474 tggttcgacccctccgccgacttccacacctaca 507
>gb|BF629934.2|BF629934 HVSMEb0007F23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007F23f, mRNA sequence
Length = 499
Score = 202 bits (102), Expect = 8e-051
Identities = 231/274 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||||| |||||| ||||||| | |||||||||| |||| ||||
Sbjct: 214 tccggctccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatg 273
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgac 347
|||||| || |||||||||||||||||||||| | | ||||||||| | || |||||
Sbjct: 274 aagctcgtcgacggcaactccgccggcaccgtcaccttcttctacctgacctccggcgag 333
Query: 348 ggcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtg 407
||| | ||||||||||||||||| ||||||||||| ||| ||||||| | ||
Sbjct: 334 agcgccacccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctac 393
Query: 408 gtgctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctc 467
||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 394 gtgatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctc 453
Query: 468 tggttcgacccctccgccgactaccacacctaca 501
|||||||||||||||||||||| |||||||||||
Sbjct: 454 tggttcgacccctccgccgacttccacacctaca 487
>gb|AV916008.1|AV916008 AV916008 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 5', mRNA sequence
Length = 533
Score = 202 bits (102), Expect = 8e-051
Identities = 231/274 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||||| |||||| ||||||| | |||||||||| |||| ||||
Sbjct: 202 tccggctccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatg 261
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgac 347
|||||| || |||||||||||||||||||||| | | ||||||||| | || |||||
Sbjct: 262 aagctcgtcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgag 321
Query: 348 ggcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtg 407
||| | ||||||||||||||||| ||||||||||| ||| ||||||| | ||
Sbjct: 322 agcgccacccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctac 381
Query: 408 gtgctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctc 467
||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 gtgatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctc 441
Query: 468 tggttcgacccctccgccgactaccacacctaca 501
|||||||||||||||||||||| |||||||||||
Sbjct: 442 tggttcgacccctccgccgacttccacacctaca 475
>gb|CA008408.1|CA008408 HU10N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU10N24
5-PRIME, mRNA sequence
Length = 607
Score = 202 bits (102), Expect = 8e-051
Identities = 231/274 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||||| |||||| ||||||| | |||||||||| |||| ||||
Sbjct: 239 tccggctccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatg 298
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgac 347
|||||| || |||||||||||||||||||||| | | ||||||||| | || |||||
Sbjct: 299 aagctcgtcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgag 358
Query: 348 ggcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtg 407
||| | ||||||||||||||||| ||||||||||| ||| ||||||| | ||
Sbjct: 359 agcgccacccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctac 418
Query: 408 gtgctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctc 467
||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 419 gtgatgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctc 478
Query: 468 tggttcgacccctccgccgactaccacacctaca 501
|||||||||||||||||||||| |||||||||||
Sbjct: 479 tggttcgacccctccgccgacttccacacctaca 512
>gb|BI959766.1|BI959766 HVSMEn0021F17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021F17f, mRNA sequence
Length = 634
Score = 188 bits (95), Expect = 1e-046
Identities = 229/273 (83%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 237 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 296
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 297 gctcatcggcggcaactccgccggcaccgggacctccttctacctgacgtctggggaggg 356
Query: 350 cgacgggcacgacg-agatcgacatggagttcatgggcaacgcgagcgggcagccggtgg 408
|||||| || |||| ||||| |||| ||||||||||||||| ||||| | || |
Sbjct: 357 cgacggccatgacgaagatcnacatcgagttcatgggcaacctcagcggcgacccctacg 416
Query: 409 tgctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctct 468
|| ||||||| ||||| ||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct: 417 tgatgaacaccaacgtctgggccagcggcgacggcaagaaagagcaccanttctacctct 476
Query: 469 ggttcgacccctccgccgactaccacacctaca 501
||||||||||| ||| | ||| ||||||||||
Sbjct: 477 ggttcgaccccaccggccacttgcacacctaca 509
>gb|BI958669.1|BI958669 HVSMEn0016C05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016C05f, mRNA sequence
Length = 674
Score = 172 bits (87), Expect = 7e-042
Identities = 174/203 (85%)
Strand = Plus / Plus
Query: 299 cggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacggcgacgggca 358
|||||||||||||||||||||| | | ||||||||| | || ||||| ||| | ||
Sbjct: 275 cggcaactccgccggcaccgtcacctccttctacctgacctccggcgagagcgccaccca 334
Query: 359 cgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggtgctgaacac 418
||||||||||||||| ||||||||||| ||| ||||||| | || ||| |||||||
Sbjct: 335 cgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatgaacac 394
Query: 419 gaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgaccc 478
||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 395 caacgtctgggccagcggcgactgcaagaaggagcaccagttctacctctggttcgaccc 454
Query: 479 ctccgccgactaccacacctaca 501
||||||||||| |||||||||||
Sbjct: 455 ctccgccgacttccacacctaca 477
>gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019O24f, mRNA sequence
Length = 672
Score = 172 bits (87), Expect = 7e-042
Identities = 186/219 (84%)
Strand = Plus / Plus
Query: 299 cggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacggcgacgggca 358
|||||||||||||||| |||| |||||||||||| |||| || || |||||||| ||
Sbjct: 4 cggcaactccgccggcgccgtggggtgcttctacctgacgtctggggagggcgacggcca 63
Query: 359 cgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggtgctgaacac 418
|||||||||||||| ||||||||||||||| ||||| | || ||| |||||||
Sbjct: 64 tgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatgaacac 123
Query: 419 gaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgaccc 478
||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 124 caacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctgggtggaccc 183
Query: 479 ctccgccgactaccacacctacaccatcatctggaaccc 517
| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 184 caccgccgacttccacacctacaagatcgtctggaaccc 222
>gb|BI958113.1|BI958113 HVSMEn0013H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013H08f, mRNA sequence
Length = 883
Score = 163 bits (82), Expect = 7e-039
Identities = 170/197 (86%), Gaps = 2/197 (1%)
Strand = Plus / Plus
Query: 258 tacctgtacggcgagttcagcgtccagatgaagctcatccccggcaactccgccggcacc 317
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 287 tacctctacggccagttcagcgtccagatgaagctcgtccccggcaactccgccggcacc 346
Query: 318 gtctcgtgcttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacatggag 377
| | | ||||||||||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct: 347 ggcgcctgcttctacctgtcgtcgggcaacgagccggggcacgacgagatcgacatgnag 406
Query: 378 ttcatgggcaacgcgagcgggcagccggtggtgctgaacacgaacgtgtgggccagcggc 437
|||||||||||| | || |||||||||| ||| || | |||||||||| || ||||
Sbjct: 407 ttcatgggcaacagcacgggccagccggtggcgct-aagcccaacgtgtggg-caacggc 464
Query: 438 gacggcaagaaggagca 454
|||||||||||||||||
Sbjct: 465 gacggcaagaaggagca 481
>gb|BI958667.1|BI958667 HVSMEn0016C03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016C03f, mRNA sequence
Length = 689
Score = 163 bits (82), Expect = 7e-039
Identities = 226/274 (82%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||||| |||||| ||||||| | |||||||||| |||| ||||
Sbjct: 198 tccggctccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatg 257
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgac 347
|||||| || |||||||||||||||||||||| | | ||||||||| | || |||||
Sbjct: 258 aagctcgtcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgag 317
Query: 348 ggcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtg 407
||| | ||||||||||||||||| ||||||||||| ||| ||||||| | ||
Sbjct: 318 agcgccacccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctac 377
Query: 408 gtgctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctc 467
||| ||||||| ||||| |||||| ||||||||||| |||| |||||||||||| |||||
Sbjct: 378 gtgatgaacaccaacgtctgggcccgcggcgacggccagaatgagcaccagttctacctc 437
Query: 468 tggttcgacccctccgccgactaccacacctaca 501
||||||||||||| || ||||| |||||||||||
Sbjct: 438 tggttcgaccccttcggcgacttccacacctaca 471
>gb|BF259456.3|BF259456 HVSMEf0019C15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019C15f, mRNA sequence
Length = 927
Score = 149 bits (75), Expect = 1e-034
Identities = 200/239 (83%), Gaps = 2/239 (0%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttca-gcgtccagatga 288
|||| ||||||||| ||||||| | ||||||| ||||||||||||| ||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggcgagttcaagcgtccagatga 297
Query: 289 agctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacg 348
|||||||| |||||||||||||||||||||| | | ||||||||| |||| || || |
Sbjct: 298 agctcatcggcggcaactccgccggcaccgtcaccttcttctacctgacgtctggggagg 357
Query: 349 gcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtgg 408
||||||| || || |||||||||| ||||| |||||||| ||||| | || | |
Sbjct: 358 gcgacggccatgaacagatcgacatcgagttactgggcaaccttagcggctaccccttcg 417
Query: 409 tgctgaacacgaacgtgtgggccagcggcgac-ggcaagaaggagcaccagttcgacct 466
|| ||||||| ||||| ||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct: 418 tgatgaacaccaacgtctgggccagcggcgactggcaagaaggagcaccatttctacct 476
>gb|AL504934.1|AL504934 AL504934 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06N22V 5', mRNA sequence
Length = 556
Score = 147 bits (74), Expect = 4e-034
Identities = 162/188 (86%), Gaps = 5/188 (2%)
Strand = Plus / Plus
Query: 151 tcaacacggacggcaccgtccgcacccagtacgacgcgtcggggcaggaggtggcgatgc 210
||||||||||||||||||||||||| |||||||| ||||| ||| |||||| |||||
Sbjct: 296 tcaacacggacggcaccgtccgcacgggatacgacgcctcgggccagcaggtggtgatgc 355
Query: 211 tcagcctggacc-gcagctccggcgcc---ggcttcaactccaagaagcagtacctgtac 266
||| ||| ||| ||| ||||||||| ||||||||||||||| |||||||||| ||
Sbjct: 356 tcaacctcaaccagcaa-tccggcgccgccggcttcaactccaagcagcagtacctctat 414
Query: 267 ggcgagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgc 326
|| ||||||||| ||||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct: 415 ggtgagttcagcatccagatgaagctcatcccggggaactccgctggcaccgtctcctgc 474
Query: 327 ttctacct 334
||||||||
Sbjct: 475 ttctacct 482
>gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j18 5', mRNA sequence
Length = 447
Score = 147 bits (74), Expect = 4e-034
Identities = 98/106 (92%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 31 tgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggt 90
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 91 tcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 136
>gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e21 5', mRNA sequence
Length = 547
Score = 147 bits (74), Expect = 4e-034
Identities = 98/106 (92%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 63 tgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggt 122
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 123 tcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 168
>gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 5', mRNA sequence
Length = 648
Score = 147 bits (74), Expect = 4e-034
Identities = 98/106 (92%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 53 tgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggt 112
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 113 tcgaccccaccgccgacttccacacctacaagatcgtctggaaccc 158
>gb|BF627429.2|BF627429 HVSMEb0004N10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004N10f, mRNA sequence
Length = 793
Score = 137 bits (69), Expect = 4e-031
Identities = 135/157 (85%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 297
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||| ||||||||||||||||| | ||||||||||| |||| || || ||
Sbjct: 298 gctcatcggcggcgactccgccggcaccgtcacctgcttctacctgacgtctggggaggg 357
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggc 386
|||||| | |||||||||||| | |||| |||||||
Sbjct: 358 cgacggccgtgacgagatcgacgtcgagtgcatgggc 394
>gb|BI956580.1|BI956580 HVSMEn0004E02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004E02f, mRNA sequence
Length = 853
Score = 137 bits (69), Expect = 4e-031
Identities = 123/141 (87%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 220 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 279
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | ||||||||| |||| || || ||
Sbjct: 280 gctcatcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggaggg 339
Query: 350 cgacgggcacgacgagatcga 370
|||||| || |||||||||||
Sbjct: 340 cgacggccatgacgagatcga 360
>gb|BG309526.2|BG309526 HVSMEc0010M24f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010M24f, mRNA sequence
Length = 807
Score = 137 bits (69), Expect = 4e-031
Identities = 198/241 (82%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||||
Sbjct: 220 cggctccggcttcagctccaaggacaagtacctctacggggagttcagcgtccagatgaa 279
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| ||| ||||||| ||||||||| | ||||||||||| |||| || || ||
Sbjct: 280 gctcatcggcgggaactccggcggcaccgtgacctgcttctacctgacgtctggggaggg 339
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|||||| || ||| |||||||||| ||| ||||||||||| |||||| | || ||
Sbjct: 340 cgacggccatgactagatcgacatcgaggtcatgggcaacctgagcggcgaccccgtacg 399
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| ||||| ||||||||||| || || | |||||||||||||| |||||||
Sbjct: 400 gatgaacaccaacgtctgggccagcggggaggggataaaggagcaccagttttacctctg 459
Query: 470 g 470
|
Sbjct: 460 g 460
>gb|BI956298.1|BI956298 HVSMEn0002B22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002B22f, mRNA sequence
Length = 842
Score = 123 bits (62), Expect = 6e-027
Identities = 95/106 (89%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct: 422 tgaacaccaacgtctgggccaccggcgacggcaagaaggagcgccagttctacctctggt 481
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||| ||| ||||| ||||||||||| ||| ||||||||||
Sbjct: 482 tcgaccccaccggcgacttccacacctacaagatcgtctggaaccc 527
>gb|BI956297.1|BI956297 HVSMEn0002B20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002B20f, mRNA sequence
Length = 833
Score = 121 bits (61), Expect = 2e-026
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 238 cggctccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaa 297
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||||||||||||||||| | | |||||| || ||| || || ||
Sbjct: 298 gctcatcggcggcaactccgccggcaccgtcacctccttctaactgacgtgtggggaggg 357
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggc 386
|||||| || ||| ||||| |||| || |||||||||
Sbjct: 358 cgacggccatgactagatctacatcgaattcatgggc 394
>gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 3', mRNA sequence
Length = 664
Score = 121 bits (61), Expect = 2e-026
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 433 gcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactacc 492
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 664 gcggcgacggcaagaaggagcaccagttctacctctggttcgacccctccgccgacttcc 605
Query: 493 acacctaca 501
|||||||||
Sbjct: 604 acacctaca 596
>gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 5', mRNA sequence
Length = 627
Score = 121 bits (61), Expect = 2e-026
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 433 gcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactacc 492
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct: 2 gcggcgacggcaagaaggagcaccagttctacctctggttcgaccccaccgccgacttcc 61
Query: 493 acacctacaccatcatctggaaccc 517
||||||||| ||| ||||||||||
Sbjct: 62 acacctacaagatcgtctggaaccc 86
>gb|BF625577.3|BF625577 HVSMEa0011I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011I16f, mRNA sequence
Length = 659
Score = 117 bits (59), Expect = 4e-025
Identities = 134/159 (84%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| ||||||||| |||||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 230 cggctccggcttcagctccaaagacaagtacctctacggcgagttcagcgtccagatgaa 289
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
||||||| |||||||| |||||||||||| | | ||| ||||| |||| || || ||
Sbjct: 290 gctcatcggcggcaacttcgccggcaccgtgaccttcttttacctgacgtctggggaggg 349
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaa 388
|||| | || ||| |||||||||| ||||||||||||||
Sbjct: 350 cgaccgccatgacaagatcgacatcgagttcatgggcaa 388
>gb|BU971950.1|BU971950 HB20C15r BC Hordeum vulgare subsp. vulgare cDNA clone HB20C15
5-PRIME, mRNA sequence
Length = 446
Score = 115 bits (58), Expect = 2e-024
Identities = 181/222 (81%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||||| |||||| ||||||| | |||||||||| |||| ||||
Sbjct: 225 tccggctccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatg 284
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgac 347
|||||| || |||||||||||||||||||||| | | ||||||||| | || |||||
Sbjct: 285 aagctcgtcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgag 344
Query: 348 ggcgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtg 407
||| | ||||||||||||||||| ||||||||||| ||| ||||||| | ||
Sbjct: 345 agcgccacccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctac 404
Query: 408 gtgctgaacacgaacgtgtgggccagcggcgacggcaagaag 449
||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 405 gtgatgaacaccaacgtctgggccagcggcgacggcaagaag 446
>gb|BF256171.2|BF256171 HVSMEf0008P16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008P16f, mRNA sequence
Length = 446
Score = 111 bits (56), Expect = 2e-023
Identities = 218/272 (80%)
Strand = Plus / Plus
Query: 230 cggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatgaa 289
|||| |||||||||| |||||| ||||||||| ||||||||| | || ||||||
Sbjct: 76 cggctccggcttcaagtccaaggccaagtacctgtttggcgagttccaagcccggatgaa 135
Query: 290 gctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcgggcgacgg 349
|||| || ||| |||||||||||||||||| | | ||||||||| | || ||||| |
Sbjct: 136 gctcgtcgacgggaactccgccggcaccgtcacctacttctacctgacctccggcgagag 195
Query: 350 cgacgggcacgacgagatcgacatggagttcatgggcaacgcgagcgggcagccggtggt 409
|| | ||||||||||||||||| ||||||||||| ||| | ||||| | || ||
Sbjct: 196 cgccacccacgacgagatcgacatcgagttcatgggaaactctagcggcgacccctacgt 255
Query: 410 gctgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctg 469
| ||||||| | ||| ||||||||||| |||||||||||||||||||| ||| |||| ||
Sbjct: 256 gatgaacaccatcgtatgggccagcggtgacggcaagaaggagcaccatttctacctatg 315
Query: 470 gttcgacccctccgccgactaccacacctaca 501
|| |||||||||| ||||| ||||||||||
Sbjct: 316 gtgagacccctccgacgacttgcacacctaca 347
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,596
Number of Sequences: 312970
Number of extensions: 98596
Number of successful extensions: 27882
Number of sequences better than 0.5: 176
Number of HSP's better than 0.5 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27427
Number of HSP's gapped (non-prelim): 432
length of query: 529
length of database: 175,134,539
effective HSP length: 19
effective length of query: 510
effective length of database: 169,188,109
effective search space: 86285935590
effective search space used: 86285935590
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)