BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.3
(792 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU987196.1|BU987196 HF14B07r HF Hordeum vulgare subsp. v... 402 e-111
gb|BU971843.1|BU971843 HB19N11r BC Hordeum vulgare subsp. v... 307 3e-082
gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots... 272 2e-071
gb|BG342914.2|BG342914 HVSMEg0001E07f Hordeum vulgare pre-a... 234 4e-060
gb|DW474945.1|DW474945 22-n221 Subtracted libraries from ep... 208 2e-052
gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. v... 204 3e-051
gb|AV909143.1|AV909143 AV909143 K. Sato unpublished cDNA li... 196 8e-049
gb|AV923246.1|AV923246 AV923246 K. Sato unpublished cDNA li... 186 7e-046
gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA li... 178 2e-043
gb|CA012048.1|CA012048 HT04E17r HT Hordeum vulgare subsp. v... 161 4e-038
gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed D... 157 7e-037
gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. v... 119 1e-025
gb|BI950307.1|BI950307 HVSMEl0020C23f Hordeum vulgare spike... 103 9e-021
gb|CA021976.1|CA021976 HZ41L20r HZ Hordeum vulgare subsp. v... 58 5e-007
gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedl... 46 0.002
gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-a... 46 0.002
gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DA... 46 0.002
gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA li... 46 0.002
gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA li... 46 0.002
gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. v... 46 0.002
gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. v... 46 0.002
gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA008339.1|CA008339 HU10K10r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. v... 46 0.002
gb|AZ048438.1|AZ048438 PSB19 Barley PstI genomic clones Hor... 44 0.007
gb|BG342949.2|BG342949 HVSMEg0001H04f Hordeum vulgare pre-a... 44 0.007
gb|AV923846.1|AV923846 AV923846 K. Sato unpublished cDNA li... 44 0.007
gb|CA006612.1|CA006612 HU05D02r HU Hordeum vulgare subsp. v... 44 0.007
gb|BI950252.1|BI950252 HVSMEl0019O12f Hordeum vulgare spike... 38 0.43
gb|BI955241.1|BI955241 HVSMEm0022B07f Hordeum vulgare green... 38 0.43
gb|BF064579.3|BF064579 HV_CEb0015P07f Hordeum vulgare seedl... 38 0.43
gb|BQ464897.1|BQ464897 HU02B06r HU Hordeum vulgare subsp. v... 38 0.43
gb|BQ465275.1|BQ465275 HU03C13r HU Hordeum vulgare subsp. v... 38 0.43
gb|BQ471404.1|BQ471404 HV02F10r HV Hordeum vulgare subsp. v... 38 0.43
gb|BI778706.2|BI778706 EBro01_SQ001_C13_R root, 3 week, hyd... 38 0.43
gb|CA017533.1|CA017533 HV05H20r HV Hordeum vulgare subsp. v... 38 0.43
gb|CB882460.1|CB882460 HL01O19w HL Hordeum vulgare subsp. v... 38 0.43
>gb|BU987196.1|BU987196 HF14B07r HF Hordeum vulgare subsp. vulgare cDNA clone HF14B07
5-PRIME, mRNA sequence
Length = 613
Score = 402 bits (203), Expect = e-111
Identities = 417/487 (85%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggt 366
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | ||||| |
Sbjct: 23 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtatggat 82
Query: 367 gtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
|| ||||||| |||| |||||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 83 gtgcacattaccgaagaagatgccgcatacgagcaccttgctgcaatgacatttttgatt 142
Query: 427 gccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatg 486
|||| ||||||||||||||| | |||||||| |||| |||||||| | | | ||||
Sbjct: 143 gccggcactgccacaatgaatcaaagaattcgattagaattgatactcctaggcgacatg 202
Query: 487 aacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggagg 546
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 203 aacttccacgccatgaactgcagcaggtcatatgctcattgtgtggcactgaacaagagg 262
Query: 547 tgcgacaagtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtgca 606
| |||||| |||| |||| || ||||| ||||||||||| || ||||||| ||||||
Sbjct: 263 tacgacaaatatgcatcagctgtggtgtatgcatggggaagtatttctgtgaagtgtgca 322
Query: 607 aactcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgta 666
| ||||| || ||||||||||| |||||||||||||||||| | || ||||||||||| |
Sbjct: 323 agctctttgatgatgatgtctcaaaacagcagtatcactgccatggttgtggaatatgca 382
Query: 667 gaatcggagggagggagaatttcttccactgttcaaa-atgtggatgttgctattcaatt 725
|||| || || |||||||||||||| ||||| ||||| |||||||||||| ||||| | |
Sbjct: 383 gaattggtggcagggagaatttctttcactgctcaaanatgtggatgttgttattctact 442
Query: 726 gcgctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgc 785
| ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 443 gttttgaagaacagtcatgcatgtgttgaaggagccatgcatcatgactgtccaatctgc 502
Query: 786 ttcgagt 792
|||||||
Sbjct: 503 ttcgagt 509
>gb|BU971843.1|BU971843 HB19N11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19N11
5-PRIME, mRNA sequence
Length = 633
Score = 307 bits (155), Expect = 3e-082
Identities = 332/391 (84%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggt 366
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | ||||| |
Sbjct: 240 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtatggat 299
Query: 367 gtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
|| ||||||| |||| |||||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 300 gtgcacattaccgaagaagatgccgcatacgagcaccttgctgcaatgacatttttgatt 359
Query: 427 gccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatg 486
|||| ||||||||||||||| | |||||||| |||| |||||||| | | | ||||
Sbjct: 360 gccggcactgccacaatgaatcaaagaattcgattagaattgatactcctaggcgacatg 419
Query: 487 aacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggagg 546
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 420 aacttccacgccatgaactgcagcaggtcatatgctcattgtgtggcactgaacaagagg 479
Query: 547 tgcgacaagtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtgca 606
| |||||| |||| |||| || ||||| ||||||||||| || ||||||| ||||||
Sbjct: 480 tacgacaaatatgcatcagctgtggtgtatgcatggggaagtatttctgtgaagtgtgca 539
Query: 607 aactcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgta 666
| ||||| || ||||||||||| |||||||||||||||||| | || ||||||||||| |
Sbjct: 540 agctctttgatgatgatgtctcaaaacagcagtatcactgccatggttgtggaatatgca 599
Query: 667 gaatcggagggagggagaatttcttccactg 697
|||| || || |||||||||||||| |||||
Sbjct: 600 gaattggtggcagggagaatttctttcactg 630
>gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C11V 5', mRNA sequence
Length = 478
Score = 272 bits (137), Expect = 2e-071
Identities = 248/285 (87%)
Strand = Plus / Plus
Query: 508 agcaggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatgtatcaatt 567
||||||| ||||||||||||||||||||||||| ||||| |||||| |||| |||| |
Sbjct: 7 agcaggtcatatgctcattgtgtggcactgaacaagaggtacgacaaatatgcatcagct 66
Query: 568 gcggtgtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtct 627
| ||||| ||||||||||| || ||||||| ||||||| ||||| || ||||||||||
Sbjct: 67 gtggtgtatgcatggggaagtatttctgtgaagtgtgcaagctctttgatgatgatgtct 126
Query: 628 ctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatt 687
| |||||||||||||||||| | || ||||||||||| ||||| || || ||||||||||
Sbjct: 127 caaaacagcagtatcactgccatggttgtggaatatgcagaattggtggcagggagaatt 186
Query: 688 tcttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatgcat 747
|||| ||||| ||||||||||||||||| ||||| | || ||||||| ||||||||||
Sbjct: 187 tctttcactgctcaaaatgtggatgttgttattctactgttttgaagaacagtcatgcat 246
Query: 748 gtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
|||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 247 gtgttgaaggagccatgcatcatgactgtccaatctgcttcgagt 291
>gb|BG342914.2|BG342914 HVSMEg0001E07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001E07f, mRNA sequence
Length = 823
Score = 234 bits (118), Expect = 4e-060
Identities = 298/358 (83%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggt 366
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | ||||| |
Sbjct: 117 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtatggat 176
Query: 367 gtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
|| ||||||| |||| | |||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 177 gtgcacattaccgaagaaaatgccgcataccagcaccttgctgcaatgacatttttgatt 236
Query: 427 gccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatg 486
|||| ||||||||||||||| | |||||||| |||| |||||||| | | | ||||
Sbjct: 237 gccggcactgccacaatgaatcaaagaattcgattagaattgatactcctaggcgacatg 296
Query: 487 aacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggagg 546
||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 297 aactttcacgccatgaactgcagcaggtcatatgctcattgtgtggcactgaacaagagg 356
Query: 547 tgcgacaagtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtgca 606
| |||||| |||| |||| || ||||| ||||||||||| || ||||||| || |||
Sbjct: 357 tacgacaaatatgcatcagctgtggtgtatgcatggggaagtatttctgtgaaatgagca 416
Query: 607 aactcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatg 664
| ||||| || ||||||| ||| ||||||||| |||||||| | || |||||||||||
Sbjct: 417 agctctttgatgatgatggctcaaaacagcaggatcactgccatggttgtggaatatg 474
>gb|DW474945.1|DW474945 22-n221 Subtracted libraries from epidermis of 7 day old barley
plants inoculated with R. secalis or the avirulence
protein NIP1 Hordeum vulgare subsp. vulgare cDNA clone
22-n221 similar to Best hit to zinc finger protein
ZFP-like in rice (BAD87761), mRNA sequence
Length = 689
Score = 208 bits (105), Expect = 2e-052
Identities = 207/241 (85%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggt 366
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | ||||| |
Sbjct: 449 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtatggat 508
Query: 367 gtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
|| ||||||| |||| |||||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 509 gtgcacattaccgaagaagatgccgcatacgagcaccttgctgcaatgacatttttgatt 568
Query: 427 gccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatg 486
|||| ||||||||||||||| | |||||||| |||| |||||||| | | | ||||
Sbjct: 569 gccggcactgccacaatgaatcaaagaattcgattagaattgatactcctaggcgacatg 628
Query: 487 aacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggagg 546
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 629 aacttccacgccatgaactgcagcaggtcatatgctcattgtgtggcactgaacaggagg 688
Query: 547 t 547
|
Sbjct: 689 t 689
>gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. vulgare cDNA clone HL01O07
3-PRIME, mRNA sequence
Length = 593
Score = 204 bits (103), Expect = 3e-051
Identities = 169/191 (88%)
Strand = Plus / Plus
Query: 602 gtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaat 661
|||||| ||||| || ||||||||||| |||||||||||||||||| | || ||||||||
Sbjct: 6 gtgcaagctctttgatgatgatgtctcaaaacagcagtatcactgccatggttgtggaat 65
Query: 662 atgtagaatcggagggagggagaatttcttccactgttcaaaatgtggatgttgctattc 721
||| ||||| || || |||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 66 atgcagaattggtggcagggagaatttctttcactgctcaaaatgtggatgttgttattc 125
Query: 722 aattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaat 781
| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 126 tactgttttgaagaacagtcatgcatgtgttgaaggagccatgcatcatgactgtccaat 185
Query: 782 ctgcttcgagt 792
|||||||||||
Sbjct: 186 ctgcttcgagt 196
>gb|AV909143.1|AV909143 AV909143 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11m03 5', mRNA sequence
Length = 622
Score = 196 bits (99), Expect = 8e-049
Identities = 201/235 (85%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggt 366
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | ||||| |
Sbjct: 387 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtatggat 446
Query: 367 gtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
|| ||||||| |||| |||||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 447 gtgcacattaccgaagaagatgccgcatacgagcaccttgctgcaatgacatttttgatt 506
Query: 427 gccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatg 486
|||| ||||||||||||||| | |||||||| |||| |||||||| | | | ||||
Sbjct: 507 gccggcactgccacaatgaatcaaagaattcgattagaattgatactcctaggcgacatg 566
Query: 487 aacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaaca 541
||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 567 aacttccacgccatgaactgcagcaggtcatatgctcattgtgtggcactgaaca 621
>gb|AV923246.1|AV923246 AV923246 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12g02 5', mRNA sequence
Length = 683
Score = 186 bits (94), Expect = 7e-046
Identities = 200/234 (85%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatggg- 365
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | ||||||
Sbjct: 450 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtatggga 509
Query: 366 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 425
||| ||||||| |||| |||||||||||| |||| |||||||||||||| |||||||||
Sbjct: 510 tgtgcacattaccgaagaagatgccgcatacgagcaccttgctgcaatgacatttttgat 569
Query: 426 tgccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcat 485
||||| ||||||||||||||| | |||||||| |||| |||||||| | | | |||
Sbjct: 570 tgccggcactgccacaatgaatcaaagaattcgattagaattgatactcctaggcgacat 629
Query: 486 gaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaa 539
|||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 630 gaacttccacgccatgaactgcagcaggtcatatgctcattgtgtggcactgaa 683
>gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10p08 3', mRNA sequence
Length = 678
Score = 178 bits (90), Expect = 2e-043
Identities = 170/194 (87%), Gaps = 2/194 (1%)
Strand = Plus / Minus
Query: 601 tgtgcaaactcttcgacgatgatgt-ctctaaacagcag-tatcactgcaacggatgtgg 658
||||||| ||||| || |||||||| ||| ||||||||| ||||||||| | || |||||
Sbjct: 674 tgtgcaagctctttgatgatgatgtnctcaaaacagcaggtatcactgccatggttgtgg 615
Query: 659 aatatgtagaatcggagggagggagaatttcttccactgttcaaaatgtggatgttgcta 718
|||||| ||||| || || |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 614 aatatgcagaattggtggcagggagaatttctttcactgctcaaaatgtggatgttgtta 555
Query: 719 ttcaattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtcc 778
||| | || ||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 554 ttctactgttttgaagaacagtcatgcatgtgttgaaggagccatgcatcatgactgtcc 495
Query: 779 aatctgcttcgagt 792
||||||||||||||
Sbjct: 494 aatctgcttcgagt 481
>gb|CA012048.1|CA012048 HT04E17r HT Hordeum vulgare subsp. vulgare cDNA clone HT04E17
5-PRIME, mRNA sequence
Length = 554
Score = 161 bits (81), Expect = 4e-038
Identities = 183/217 (84%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggt 366
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | ||||| |
Sbjct: 338 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtatggat 397
Query: 367 gtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
|| ||||||| |||| |||||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 398 gtgcacattaccgaagaagatgccgcatacgagcaccttgctgcaatgacatttttgatt 457
Query: 427 gccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatg 486
|||| ||||||||||||||| | |||||||| |||| |||||||| | | | ||||
Sbjct: 458 gccggcactgccacaatgaatcaaagaattcgattagaattgatactcctaggcgacatg 517
Query: 487 aacttccacgccatgaagtgcagcaggttgtatgctc 523
||||||||||||||||| |||||||||| |||||||
Sbjct: 518 aacttccacgccatgaactgcagcaggtcatatgctc 554
>gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ah10, mRNA sequence
Length = 706
Score = 157 bits (79), Expect = 7e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 654 tgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgtggatgt 713
||||||||||| ||||| || || |||||||||||||| ||||| |||||||||||||||
Sbjct: 696 tgtggaatatgcagaattggtggcagggagaatttctttcactgctcaaaatgtggatgt 637
Query: 714 tgctattcaattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgcatcatgac 773
|| ||||| | || ||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 636 tgttattctactgttttgaagaacagtcatgcatgtgttgaaggagccatgcatcatgac 577
Query: 774 tgtccaatctgcttcgagt 792
|||||||||||||||||||
Sbjct: 576 tgtccaatctgcttcgagt 558
>gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F20
3-PRIME, mRNA sequence
Length = 663
Score = 119 bits (60), Expect = 1e-025
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 693 cactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatgcatgtgtt 752
||||| ||||||||||||||||| ||||| | || ||||||| |||||||||||||||
Sbjct: 659 cactgctcaaaatgtggatgttgttattctactgttttgaagaacagtcatgcatgtgtt 600
Query: 753 gaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
||||| || |||||||||||||||||||||||||||||||
Sbjct: 599 gaaggagccatgcatcatgactgtccaatctgcttcgagt 560
>gb|BI950307.1|BI950307 HVSMEl0020C23f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0020C23f, mRNA sequence
Length = 466
Score = 103 bits (52), Expect = 9e-021
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 307 tcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggt 366
|||||||||| ||| ||||||| ||||| | ||||||||| || ||||| | || | |
Sbjct: 328 tcaatggttctaactctgatgagtatgaaagatttgagaagggattaatggagtaatgat 387
Query: 367 gtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
|| ||||||| |||| |||||||||||| |||| |||||||||||||| ||| ||||||
Sbjct: 388 gtgcacattaccgaagaagatgccgcatacgagcaccttgctgcaatgacattnttgatt 447
Query: 427 gccgacactgccacaatga 445
|||| ||||||||||||||
Sbjct: 448 gccggcactgccacaatga 466
>gb|CA021976.1|CA021976 HZ41L20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41L20
5-PRIME, mRNA sequence
Length = 386
Score = 58.0 bits (29), Expect = 5e-007
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagta-ttgtgttgtgtttgcaacg 161
|||||| |||||||| || ||||||||||| ||||||||| |||||||||| |||||| |
Sbjct: 143 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagtatttgtgttgtgcttgcaagg 201
Query: 162 tgatagctt 170
||||||||
Sbjct: 202 cgatagctt 210
>gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009K16f, mRNA sequence
Length = 852
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 390 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 449
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 450 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 509
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 510 tgcgaaaaatgcgggtgttgcta 532
>gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L08f, mRNA sequence
Length = 996
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 359 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 418
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 419 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 478
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 479 tgcgaaaaatgcgggtgttgcta 501
>gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026J11f, mRNA sequence
Length = 682
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 180 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 239
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 240 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 299
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 300 tgcgaaaaatgcgggtgttgcta 322
>gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12n20 5', mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 409 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 468
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 469 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 528
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 529 tgcgaaaaatgcgggtgttgcta 551
>gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26k21 5', mRNA sequence
Length = 605
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 374 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 433
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 434 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 493
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 494 tgcgaaaaatgcgggtgttgcta 516
>gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. vulgare cDNA clone HU03N03
5-PRIME, mRNA sequence
Length = 575
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 292 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 351
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 352 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 411
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 412 tgcgaaaaatgcgggtgttgcta 434
>gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. vulgare cDNA clone HS01E20
5-PRIME, mRNA sequence
Length = 583
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 227 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 286
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 287 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 346
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 347 tgcgaaaaatgcgggtgttgcta 369
>gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. vulgare cDNA clone HS02E20
5-PRIME, mRNA sequence
Length = 587
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 227 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 286
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 287 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 346
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 347 tgcgaaaaatgcgggtgttgcta 369
>gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. vulgare cDNA clone HS07F02
5-PRIME, mRNA sequence
Length = 503
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 227 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 286
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 287 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 346
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 347 tgcgaaaaatgcgggtgttgcta 369
>gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. vulgare cDNA clone HU08G03
5-PRIME, mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 364 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 423
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 424 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 483
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 484 tgcgaaaaatgcgggtgttgcta 506
>gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. vulgare cDNA clone HU09O15
5-PRIME, mRNA sequence
Length = 651
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 398 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 457
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 458 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 517
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 518 tgcgaaaaatgcgggtgttgcta 540
>gb|CA008339.1|CA008339 HU10K10r HU Hordeum vulgare subsp. vulgare cDNA clone HU10K10
5-PRIME, mRNA sequence
Length = 532
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 364 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 423
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 424 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 483
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 484 tgcgaaaaatgcgggtgttgcta 506
>gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. vulgare cDNA clone HU11O06
5-PRIME, mRNA sequence
Length = 610
Score = 46.1 bits (23), Expect = 0.002
Identities = 113/143 (79%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacag 635
|||||||||||||||||||||| ||||| |||| ||||||||| |||| || |
Sbjct: 398 tgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaac 457
Query: 636 cagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttcttccac 695
|||||||||||| | ||||| || || || |||| || || | ||| ||||||||||||
Sbjct: 458 cagtatcactgcgatggatgcggcatctgcagaactggtggcatggacaatttcttccac 517
Query: 696 tgttcaaaatgtggatgttgcta 718
|| |||||| || ||||||||
Sbjct: 518 tgcgaaaaatgcgggtgttgcta 540
>gb|AZ048438.1|AZ048438 PSB19 Barley PstI genomic clones Hordeum vulgare subsp. vulgare
genomic clone PSB19, DNA sequence
Length = 1135
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtg 597
||||||||||||||||||||||
Sbjct: 1035 tgcatggggaaatacttctgtg 1056
>gb|BG342949.2|BG342949 HVSMEg0001H04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001H04f, mRNA sequence
Length = 844
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtg 597
||||||||||||||||||||||
Sbjct: 399 tgcatggggaaatacttctgtg 420
>gb|AV923846.1|AV923846 AV923846 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m15 5', mRNA sequence
Length = 519
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtg 597
||||||||||||||||||||||
Sbjct: 418 tgcatggggaaatacttctgtg 439
>gb|CA006612.1|CA006612 HU05D02r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D02
5-PRIME, mRNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtg 597
||||||||||||||||||||||
Sbjct: 398 tgcatggggaaatacttctgtg 419
>gb|BI950252.1|BI950252 HVSMEl0019O12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0019O12f, mRNA sequence
Length = 570
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 141 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 178
>gb|BI955241.1|BI955241 HVSMEm0022B07f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0022B07f, mRNA sequence
Length = 670
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 121 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 158
>gb|BF064579.3|BF064579 HV_CEb0015P07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015P07f, mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 129 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 166
>gb|BQ464897.1|BQ464897 HU02B06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02B06
5-PRIME, mRNA sequence
Length = 560
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 130 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 167
>gb|BQ465275.1|BQ465275 HU03C13r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C13
5-PRIME, mRNA sequence
Length = 427
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 130 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 167
>gb|BQ471404.1|BQ471404 HV02F10r HV Hordeum vulgare subsp. vulgare cDNA clone HV02F10
5-PRIME, mRNA sequence
Length = 452
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 110 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 147
>gb|BI778706.2|BI778706 EBro01_SQ001_C13_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_C13 5', mRNA sequence
Length = 360
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 76 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 113
>gb|CA017533.1|CA017533 HV05H20r HV Hordeum vulgare subsp. vulgare cDNA clone HV05H20
5-PRIME, mRNA sequence
Length = 500
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 110 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 147
>gb|CB882460.1|CB882460 HL01O19w HL Hordeum vulgare subsp. vulgare cDNA clone HL01O19
3-PRIME, mRNA sequence
Length = 625
Score = 38.2 bits (19), Expect = 0.43
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 103 cccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||||| |||||||| || ||||||||||| ||||||||
Sbjct: 134 cccgcccgctcgattcgg-tcgcgtgtgcgctaggaagt 171
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,848
Number of Sequences: 312970
Number of extensions: 76848
Number of successful extensions: 20452
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 20372
Number of HSP's gapped (non-prelim): 68
length of query: 792
length of database: 175,134,539
effective HSP length: 19
effective length of query: 773
effective length of database: 169,188,109
effective search space: 130782408257
effective search space used: 130782408257
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)