BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071507.2.1
(921 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. v... 420 e-116
gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA,... 406 e-112
gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA li... 394 e-108
gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA li... 394 e-108
gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA li... 371 e-101
gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedl... 327 4e-088
gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike... 309 9e-083
gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedl... 305 1e-081
gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. v... 287 3e-076
gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedl... 281 2e-074
gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachi... 230 6e-059
gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedl... 222 2e-056
gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachi... 206 9e-052
gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA li... 206 9e-052
gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedl... 202 1e-050
gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike... 194 4e-048
gb|BI777453.2|BI777453 EBro04_SQ001_E09_R root, 3 week, sal... 174 3e-042
gb|CB877686.1|CB877686 HP05N08T HP Hordeum vulgare subsp. v... 172 1e-041
gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachi... 168 2e-040
gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA li... 167 8e-040
gb|BI777594.2|BI777594 EBro04_SQ001_L05_R root, 3 week, sal... 165 3e-039
gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedl... 163 1e-038
gb|CX662371.1|CX662371 EST 159 Expressed sequences from Bar... 163 1e-038
gb|BF623534.2|BF623534 HVSMEa0002J16f Hordeum vulgare seedl... 161 5e-038
gb|BJ451867.1|BJ451867 BJ451867 K. Sato unpublished cDNA li... 159 2e-037
gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. v... 159 2e-037
gb|AV921385.1|AV921385 AV921385 K. Sato unpublished cDNA li... 151 5e-035
gb|AL503387.1|AL503387 AL503387 Hordeum vulgare Barke roots... 147 8e-034
gb|AV913778.1|AV913778 AV913778 K. Sato unpublished cDNA li... 147 8e-034
gb|CA010065.1|CA010065 HT11L08u HT Hordeum vulgare subsp. v... 141 5e-032
gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, dro... 139 2e-031
gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachi... 125 3e-027
gb|BQ458310.1|BQ458310 HA05J23r HA Hordeum vulgare subsp. v... 123 1e-026
gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. v... 123 1e-026
gb|BF259036.2|BF259036 HVSMEf0017H13f Hordeum vulgare seedl... 117 7e-025
gb|BU994106.1|BU994106 HM05M03r HM Hordeum vulgare subsp. v... 113 1e-023
gb|BQ761570.1|BQ761570 EBem10_SQ001_K03_R embryo, 2 Day ger... 111 4e-023
gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots... 105 3e-021
gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedl... 98 6e-019
gb|CA014567.1|CA014567 HT11L08r HT Hordeum vulgare subsp. v... 92 4e-017
gb|AL509635.1|AL509635 AL509635 Hordeum vulgare Barke devel... 86 2e-015
gb|AL510922.1|AL510922 AL510922 Hordeum vulgare Barke devel... 86 2e-015
gb|BE602616.3|BE602616 HVSMEh0100I13f Hordeum vulgare 5-45 ... 86 2e-015
gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. v... 86 2e-015
gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. v... 86 2e-015
gb|BQ661689.1|BQ661689 HM04O09u HM Hordeum vulgare subsp. v... 86 2e-015
gb|BQ761045.1|BQ761045 EBro04_SQ001_P08a_R root, 3 week, sa... 86 2e-015
gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. v... 86 2e-015
gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. v... 86 2e-015
gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. v... 86 2e-015
gb|CK124014.1|CK124014 BES1824106h23 BES1824 Hordeum vulgar... 86 2e-015
gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. v... 84 9e-015
gb|BI947290.1|BI947290 HVSMEl0005A16f Hordeum vulgare spike... 80 1e-013
gb|BJ465038.1|BJ465038 BJ465038 K. Sato unpublished cDNA li... 76 2e-012
gb|BF257384.2|BF257384 HVSMEf0012L22f Hordeum vulgare seedl... 74 9e-012
gb|BQ768318.1|BQ768318 EBro08_SQ011_J10_R root, 3 week, dro... 74 9e-012
gb|BI951701.1|BI951701 HVSMEm0002B16f Hordeum vulgare green... 72 4e-011
gb|AL504577.1|AL504577 AL504577 Hordeum vulgare Barke roots... 70 1e-010
gb|BE213985.3|BE213985 HV_CEb0001N07f Hordeum vulgare seedl... 60 1e-007
gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA li... 60 1e-007
gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA li... 60 1e-007
gb|BM097022.2|BM097022 EBpi07_SQ002_C11_R pistil, 12 DPA, n... 60 1e-007
gb|BQ661990.1|BQ661990 HR01B24u HR Hordeum vulgare subsp. v... 58 5e-007
gb|BG344700.2|BG344700 HVSMEg0015E05f Hordeum vulgare pre-a... 56 2e-006
gb|CK125801.1|CK125801 BES1824110n12 BES1824 Hordeum vulgar... 56 2e-006
gb|AL501883.1|AL501883 AL501883 Hordeum vulgare Barke roots... 52 3e-005
gb|AV832545.1|AV832545 AV832545 K. Sato unpublished cDNA li... 52 3e-005
gb|AL450716.1|AL450716 AL450716 Hordeum vulgare Barke etiol... 50 1e-004
gb|BI957446.1|BI957446 HVSMEn0009J16f Hordeum vulgare rachi... 50 1e-004
gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. v... 48 5e-004
gb|BE194442.1|BE194442 HVSMEh0085I24f Hordeum vulgare 5-45 ... 44 0.008
gb|BI957209.1|BI957209 HVSMEn0008C08f Hordeum vulgare rachi... 44 0.008
gb|BE216591.1|BE216591 HV_CEb0010O10f Hordeum vulgare seedl... 44 0.008
gb|BE558428.1|BE558428 HV_CEb0017J24f Hordeum vulgare seedl... 44 0.008
gb|BF065565.1|BF065565 HV_CEb0012M15f Hordeum vulgare seedl... 44 0.008
gb|BM373958.2|BM373958 EBma03_SQ003_D14_R maternal, 8 DPA, ... 44 0.008
gb|BQ758620.1|BQ758620 EBma07_SQ002_F09_R maternal, 21 DPA,... 44 0.008
gb|BQ763191.1|BQ763191 EBro02_SQ007_C15_R root, 3 week, hyd... 44 0.008
gb|BU995195.1|BU995195 HM09I05r HM Hordeum vulgare subsp. v... 44 0.008
gb|BQ767100.1|BQ767100 EBro08_SQ007_P23_R root, 3 week, dro... 42 0.032
gb|CB879019.1|CB879019 HP10K16T HP Hordeum vulgare subsp. v... 42 0.032
gb|CV059943.1|CV059943 BNEL52f5 Barley EST endosperm librar... 42 0.032
gb|CV060532.1|CV060532 BNEL59b6 Barley EST endosperm librar... 42 0.032
gb|BI957127.1|BI957127 HVSMEn0007J20f Hordeum vulgare rachi... 40 0.13
gb|AL502445.1|AL502445 AL502445 Hordeum vulgare Barke roots... 38 0.50
gb|AL504684.1|AL504684 AL504684 Hordeum vulgare Barke roots... 38 0.50
gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA li... 38 0.50
gb|BI958236.1|BI958236 HVSMEn0014A06f Hordeum vulgare rachi... 38 0.50
gb|BI959539.1|BI959539 HVSMEn0020B23f Hordeum vulgare rachi... 38 0.50
gb|BI960551.1|BI960551 HVSMEn0025A03f Hordeum vulgare rachi... 38 0.50
gb|BF254933.3|BF254933 HVSMEf0005H09f Hordeum vulgare seedl... 38 0.50
gb|BF257375.3|BF257375 HVSMEf0012L13f Hordeum vulgare seedl... 38 0.50
gb|BE454565.3|BE454565 HVSMEh0094E10f Hordeum vulgare 5-45 ... 38 0.50
gb|BG366704.2|BG366704 HVSMEi0007O23f Hordeum vulgare 20 DA... 38 0.50
gb|BQ763187.1|BQ763187 EBro02_SQ007_B16_R root, 3 week, hyd... 38 0.50
gb|BU982053.1|BU982053 HA25G06r HA Hordeum vulgare subsp. v... 38 0.50
gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. v... 38 0.50
gb|BU995187.1|BU995187 HM09H18r HM Hordeum vulgare subsp. v... 38 0.50
gb|BU996177.1|BU996177 HM12L12r HM Hordeum vulgare subsp. v... 38 0.50
gb|CA015758.1|CA015758 HV12C24u HV Hordeum vulgare subsp. v... 38 0.50
gb|CA024360.1|CA024360 HZ49B12r HZ Hordeum vulgare subsp. v... 38 0.50
gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA li... 38 0.50
gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. v... 38 0.50
gb|CB881331.1|CB881331 HM09H18w HM Hordeum vulgare subsp. v... 38 0.50
gb|CV054150.1|CV054150 BNEL107c7 Barley EST endosperm libra... 38 0.50
gb|CV057346.1|CV057346 BNEL26g5 Barley EST endosperm librar... 38 0.50
gb|CV063160.1|CV063160 BNEL87c4 Barley EST endosperm librar... 38 0.50
>gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O19
5-PRIME, mRNA sequence
Length = 595
Score = 420 bits (212), Expect = e-116
Identities = 390/448 (87%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 385 gcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcc 444
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||
Sbjct: 579 gcccttcccgcccggcacgatggcgtacgccggcagctccagcggcttggtcggccctcc 520
Query: 445 cacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgcca 504
||||| |||||||||||||| |||||||| |||||| | |||||||| ||||||||||||
Sbjct: 519 cacgaacaccatctgccccatcggcttcatcagcgcgaacagcggcgagatcgggtgcca 460
Query: 505 cgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctc 564
||||||||||||||||| ||||||||||||||| ||| ||||||| |||||| ||
Sbjct: 459 cgccgacaccgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgctcggg 400
Query: 565 gtcccggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgct 624
||||||||| | ||||||||||||||||| || ||| | ||||||| |||||| |
Sbjct: 399 gtcccggctcaccaggaactcgtccgcgcccagccgctccagcgcctcctcgcgcttccc 340
Query: 625 ggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgac 684
|| || |||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 339 gggcgaggtgctgatgacggtgacccgcatgccgaacgccttgccgaacttgacggcgac 280
Query: 685 gtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtg 744
|||||||||||| ||||||||||||||||| |||||||| || ||| |||| ||||||
Sbjct: 279 gtggccgaggcccccgaggccgacgacgcccaggtgcttccccggcgcgttcaggccgaa 220
Query: 745 gcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccag 804
||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 219 gcgcatcatcgggctgtacaccgtgacgccggcgcagagcagcggcgcggccttgtccag 160
Query: 805 cgccaagcccgtcggggacgcggaccac 832
|| | |||||||| ||||||||||||||
Sbjct: 159 cggc-agcccgtccgggacgcggaccac 133
Score = 38.2 bits (19), Expect = 0.50
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 888 cgtgcgcgtggtcgacgccgttngaggtgagcac 921
||||| || |||||| |||||| |||||||||||
Sbjct: 75 cgtgctcggggtcgatgccgttggaggtgagcac 42
>gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_P23 5', mRNA sequence
Length = 568
Score = 406 bits (205), Expect = e-112
Identities = 383/441 (86%), Gaps = 1/441 (0%)
Strand = Plus / Minus
Query: 392 ccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatc 451
|||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||||||| |
Sbjct: 568 ccgcccggcacgatggcgtacgccggcagctccagcggcttggtcggccctcccacgaac 509
Query: 452 accatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgac 511
||||||||||||| |||||||| |||||| | |||||||| |||||||||||||||||||
Sbjct: 508 accatctgccccatcggcttcatcagcgcgaacagcggcgagatcgggtgccacgccgac 449
Query: 512 accgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccgg 571
|||||||||| ||||||||||||||| ||| ||||||| |||||| || |||||||
Sbjct: 448 accgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgctcggggtcccgg 389
Query: 572 ctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcggac 631
|| | ||||||||||||||||| || ||| | ||||||| |||||| | || ||
Sbjct: 388 ctcaccaggaactcgtccgcgcccagccgctccagcgcctcctcgcgcttcccgggcgag 329
Query: 632 gtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtggccg 691
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 328 gtgctgatgacggtgacccgcatgccgaacgccttgccgaacttgacggcgacgtggccg 269
Query: 692 aggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatc 751
||||| ||||||||||||||||| |||||||| || ||| |||| |||||| |||||||
Sbjct: 268 aggcccccgaggccgacgacgcccaggtgcttccccggcgcgttcaggccgaagcgcatc 209
Query: 752 atggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccagcgccaag 811
|| ||||||||||| |||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 208 atcgggctgtacaccgtgacgccggcgcagagcagcggcgcggccttgtccagcggc-ag 150
Query: 812 cccgtcggggacgcggaccac 832
|||||| ||||||||||||||
Sbjct: 149 cccgtccgggacgcggaccac 129
Score = 38.2 bits (19), Expect = 0.50
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 888 cgtgcgcgtggtcgacgccgttngaggtgagcac 921
||||| || |||||| |||||| |||||||||||
Sbjct: 72 cgtgctcggggtcgatgccgttggaggtgagcac 39
>gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 5', mRNA sequence
Length = 575
Score = 394 bits (199), Expect = e-108
Identities = 346/395 (87%)
Strand = Plus / Minus
Query: 200 gagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagc 259
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 463 gagccgaggctgcccgcgatgtcgatgacgaagcggtagcggacgtcgttcttcgcgagc 404
Query: 260 cgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccg 319
||||| | ||||||||||||||||||||||| || ||||| ||||| || |||||||
Sbjct: 403 cgctcgagcgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatgccg 344
Query: 320 tgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttccca 379
||||| ||||||| || |||||||||||||||||||||| || |||||| ||||||
Sbjct: 343 tgctttgccgcgaattccagcatggcctggcagtccctgatgccgccgacgcagttcccg 284
Query: 380 gccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggc 439
|| | ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct: 283 gcgatgcccttcccgcccggcacgatggcgtacgccggcagctccagcggcttggtcggc 224
Query: 440 gcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcggg 499
| ||||||| |||||||||||||| |||||||| |||||| | |||||||| |||||||
Sbjct: 223 cctcccacgaacaccatctgccccatcggcttcatcagcgcgaacagcggcgagatcggg 164
Query: 500 tgccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctgg 559
|||||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||
Sbjct: 163 tgccacgccgacaccgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgc 104
Query: 560 tcctcgtcccggctgatgaggaactcgtccgcgcc 594
|| ||||||||| | |||||||||||||||||
Sbjct: 103 tcggggtcccggctcaccaggaactcgtccgcgcc 69
>gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 3', mRNA sequence
Length = 554
Score = 394 bits (199), Expect = e-108
Identities = 346/395 (87%)
Strand = Plus / Plus
Query: 200 gagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagc 259
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 92 gagccgaggctgcccgcgatgtcgatgacgaagcggtagcggacgtcgttcttcgcgagc 151
Query: 260 cgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccg 319
||||| | ||||||||||||||||||||||| || ||||| ||||| || |||||||
Sbjct: 152 cgctcgagcgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatgccg 211
Query: 320 tgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttccca 379
||||| ||||||| || |||||||||||||||||||||| || |||||| ||||||
Sbjct: 212 tgctttgccgcgaattccagcatggcctggcagtccctgatgccgccgacgcagttcccg 271
Query: 380 gccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggc 439
|| | ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct: 272 gcgatgcccttcccgcccggcacgatggcgtacgccggcagctccagcggcttggtcggc 331
Query: 440 gcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcggg 499
| ||||||| |||||||||||||| |||||||| |||||| | |||||||| |||||||
Sbjct: 332 cctcccacgaacaccatctgccccatcggcttcatcagcgcgaacagcggcgagatcggg 391
Query: 500 tgccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctgg 559
|||||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||
Sbjct: 392 tgccacgccgacaccgtgtcgaggatgccgtccatggtgcccacggccgcctgcatctgc 451
Query: 560 tcctcgtcccggctgatgaggaactcgtccgcgcc 594
|| ||||||||| | |||||||||||||||||
Sbjct: 452 tcggggtcccggctcaccaggaactcgtccgcgcc 486
>gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 5', mRNA sequence
Length = 616
Score = 371 bits (187), Expect = e-101
Identities = 424/503 (84%)
Strand = Plus / Minus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 503 ggctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcga 444
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct: 443 ccgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcc 384
Query: 327 ccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgc 386
||||||| || ||||| ||||||||||| | |||||||| || |||||| |||| ||
Sbjct: 383 ccgcgaagtccagcatcgcctggcagtcgcgcacgctgcccacgccgttcccggccaagc 324
Query: 387 ccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgccca 446
||| ||||| | |||||||||||| |||||| | || |||| |||||||||||| |
Sbjct: 323 gcttgccgcctccgatgatggcgtaggctggcagcgccaggggctcgctcggcgcgccga 264
Query: 447 cgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacg 506
| | |||||||||||||| |||||||| |||| ||||||| ||| || |||||||| ||
Sbjct: 263 ccaccaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtgccccg 204
Query: 507 ccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgt 566
|||||||||||||||||||||||||||| ||||||| ||| |||||||| || || |||
Sbjct: 203 ccgacaccgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctcggcgt 144
Query: 567 cccggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctgg 626
|| |||||| | |||| |||| ||||||||| ||||| ||||||| |||||| || |
Sbjct: 143 cctggctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgcttcctcg 84
Query: 627 cggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgt 686
|||| |||||| |||||||| |||||||||| |||||||||||||||||||| | ||
Sbjct: 83 gcgacgagctgatcacggtgacggtcatcccgaacgccttgccgaacttgacggccatgt 24
Query: 687 ggccgaggccgccgaggccgacg 709
||||||| || ||||||||||||
Sbjct: 23 ggccgagacccccgaggccgacg 1
>gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012A06f, mRNA sequence
Length = 852
Score = 327 bits (165), Expect = 4e-088
Identities = 396/473 (83%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
|||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 486 ctgccggcgacgtcgatgacgaagcggtccctcacgtcgttcttctccagccgctcgacc 427
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
|||||||| |||||||||||||||| ||||||||| || || ||||||||||||||||
Sbjct: 426 gccgtgttcacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcccc 367
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| | |||||||| || |||||| |||| || |
Sbjct: 366 gcgaagtccagcatcgcctggcagtcgcgcacgctgcccacgccgttcccggccaagcgc 307
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|| ||||| | |||||||||||| |||||| | || |||| |||||||||||| ||
Sbjct: 306 ttgccgcctccgatgatggcgtaggctggcagcgccaggggctcgctcggcgcgccgacc 247
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
| |||||||||||||| |||||||| |||| ||||||| ||| || |||||||| ||||
Sbjct: 246 accaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtgccccgcc 187
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcc 568
|||||||||||||||||||||||||| ||||||| ||| |||||||| || || |||||
Sbjct: 186 gacaccgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctcggcgtcc 127
Query: 569 cggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcg 628
|||||| | |||| |||| ||||||||| ||||| ||||||| |||||| || |
Sbjct: 126 tggctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgcttcctcggc 67
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggc 681
|||| |||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct: 66 gacgagctgatcacggtgacggtcatcccgaacgccttgccgaacttgacggc 14
>gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005A06f, mRNA sequence
Length = 994
Score = 309 bits (156), Expect = 9e-083
Identities = 439/531 (82%), Gaps = 2/531 (0%)
Strand = Plus / Minus
Query: 244 gtcgttcttctcgagccgctccatggccgtgttgacgtagtccatcttgatgacctcgac 303
|||||| ||||| |||||||| | || ||||||| ||||||| | |||| |||||||||
Sbjct: 595 gtcgttattctccagccgctcgaccgcggtgttgaggtagtcctttttgaagacctcgac 536
Query: 304 ctcggccccgatgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgct 363
|| || ||||||||||||||||||||| || ||||| ||||||||||| | |||||
Sbjct: 535 gtccgcggtgatgccgtgcttccccgcgaagtccagcatcgcctggcagtcgcgcacgct 476
Query: 364 gccgacattgttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctc 423
||| || |||||| |||| || ||| ||||| | |||||||||||| |||||| |
Sbjct: 475 gcccacgccgttcccggccaagcgcttgccgcctccgatgatggcgtaggctggcagcgc 416
Query: 424 gagcggcttgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccag 483
|| |||| |||||||||||| || | |||||||||||||| |||||||| |||| ||||
Sbjct: 415 caggggctcgctcggcgcgccgacca-caccatctgccccatcggcttcatcagctccag 357
Query: 484 cagcggcgtgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtccccgt 543
||| ||| || |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 356 cagtggcacgagcgggtgccccgccgacaccgtgtcgatgatgccgtccatcgtccccgc 297
Query: 544 cgccgccttcatctggtcctcgtcccggctgatgaggaactcgtccgcgccgaggttctc 603
||| |||||||| || || ||||| |||||| | |||| |||| ||||||||| |||
Sbjct: 296 cgcagccttcatttgctcggcgtcctggctgaccaagaacgcgtcggcgccgaggcgctc 237
Query: 604 gatggcctcctggcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggc 663
|| ||||||| |||||| || | |||| |||||| |||||||| |||||||||| ||
Sbjct: 236 gagcgcctcctcgcgcttcctcggcgacgagctgatcacggtgacggtcatcccgaacgc 177
Query: 664 cttgccgaacttgacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgctt 723
|||||||||||||||||| | ||||||||| || |||||||||||||| |||||||||||
Sbjct: 176 cttgccgaacttgacggccatgtggccgagacccccgaggccgacgactccgaggtgctt 117
Query: 724 gccgggctcgttgaggccgtggcgcatcat-ggggctgtacacggtgacgc 773
|| || |||||||||||| ||||||| || ||||||||| |||||||
Sbjct: 116 ccccggggcgttgaggccgtactgcatcatcggngctgtacaccgtgacgc 66
>gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005J24f, mRNA sequence
Length = 595
Score = 305 bits (154), Expect = 1e-081
Identities = 331/390 (84%)
Strand = Plus / Minus
Query: 403 gatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatctgccc 462
||||| |||||| |||||| | || |||| ||| |||||||| || | ||||||||||||
Sbjct: 490 gatggggtaggctggcagcgccaggggctcgcttggcgcgccgaccaccaccatctgccc 431
Query: 463 cagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgtcgat 522
|| |||||||| |||| ||||||| ||| || ||||||| ||||||||||||||||||
Sbjct: 430 catcggcttcatcagctccagcagtggcacgagcgggtgcaccgccgacaccgtgtcgat 371
Query: 523 gatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctgatgaggaa 582
|||||||||||| ||||||| ||| |||||||| || || ||||| |||||| | |||
Sbjct: 370 gatgccgtccatcgtccccgccgcagccttcatttgctcggcgtcctggctgaccaagaa 311
Query: 583 ctcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcggacgtgctgatgac 642
| |||| ||||||||| ||||| ||||||| |||||| || | |||| |||||| ||
Sbjct: 310 cgcgtcggcgccgaggcgctcgagcgcctcctcgcgcttcctcggcgacgagctgatcac 251
Query: 643 ggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtggccgaggccgccgag 702
|||||| |||||||||| |||||||||||||||||||| | ||||||||| || |||||
Sbjct: 250 ggtgacggtcatcccgaacgccttgccgaacttgacggccatgtggccgagacccccgag 191
Query: 703 gccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatcatggggctgta 762
||||||||| ||||||||||| || ||| |||||||||||| ||||||| ||||||||
Sbjct: 190 gccgacgactccgaggtgcttccccggcgcgttgaggccgtactgcatcatcgggctgta 131
Query: 763 cacggtgacgccggcgcagagcagcggcgc 792
||| ||||||||||||||||||||||||||
Sbjct: 130 caccgtgacgccggcgcagagcagcggcgc 101
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 313 gatgccgtgcttccccgcgaactcgagcatggcctggcagt 353
||||||||||||||||||||| || || |||||||||||||
Sbjct: 580 gatgccgtgcttccccgcgaagtccagaatggcctggcagt 540
>gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. vulgare cDNA clone HS05A02
3-PRIME, mRNA sequence
Length = 513
Score = 287 bits (145), Expect = 3e-076
Identities = 298/349 (85%)
Strand = Plus / Plus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 143 ggctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcga 202
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct: 203 ccgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcc 262
Query: 327 ccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgc 386
||||||| || ||||| ||||||||||| | |||||||| || |||||| |||| ||
Sbjct: 263 ccgcgaagtccagcatcgcctggcagtcgcgcacgctgcccacgccgttcccggccaagc 322
Query: 387 ccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgccca 446
||| ||||| | |||||||||||| |||||| | || |||| |||||||||||| |
Sbjct: 323 gcttgccgcctccgatgatggcgtaggctggcagcgccaggggctcgctcggcgcgccga 382
Query: 447 cgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacg 506
| | |||||||||||||| |||||||| |||| ||||||| ||| || |||||||| ||
Sbjct: 383 ccaccaccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtgccccg 442
Query: 507 ccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcat 555
|||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 443 ccgacaccgtgtcgatgatgccgtccatcgtccccgccgcagccttcat 491
>gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0022N15f, mRNA sequence
Length = 787
Score = 281 bits (142), Expect = 2e-074
Identities = 292/342 (85%)
Strand = Plus / Minus
Query: 451 caccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccga 510
|||||||||||||| |||||||| ||| ||||||| ||| || |||||||| ||||||
Sbjct: 620 caccatctgccccatcggcttcatcagttccagcagtggcacgagcgggtgccccgccga 561
Query: 511 caccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccg 570
|||||||||||||||||||||||| ||||||| ||| |||||||| || || ||||| |
Sbjct: 560 caccgtgtcgatgatgccgtccatcgtccccgccgcagccttcatttgctcggcgtcctg 501
Query: 571 gctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcgga 630
||||| | |||| |||| ||||||||| ||||| ||||||| |||||| || | ||
Sbjct: 500 gctgaccaagaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgcttcctcggcga 441
Query: 631 cgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtggcc 690
|| |||||| |||||||| |||||||||| |||||||||||||||||||| | ||||||
Sbjct: 440 cgagctgatcacggtgacggtcatcccgaacgccttgccgaacttgacggccatgtggcc 381
Query: 691 gaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcat 750
||| || |||||||||||||| ||||||||||| || ||| |||||||||||| ||||
Sbjct: 380 gagacccccgaggccgacgactccgaggtgcttccccggcgcgttgaggccgtactgcat 321
Query: 751 catggggctgtacacggtgacgccggcgcagagcagcggcgc 792
||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 320 catcgggctgtacaccgtgacgccggcgcagagcaacggcgc 279
>gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L10f, mRNA sequence
Length = 647
Score = 230 bits (116), Expect = 6e-059
Identities = 209/240 (87%)
Strand = Plus / Minus
Query: 200 gagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagc 259
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct: 240 gagccgaggctgcccgcgatgtcgatgacgaagcggtagcggacgtcgttcttcgcgacc 181
Query: 260 cgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccg 319
||||| | ||||||||||||||||||||||| || ||||| ||||| || |||||||
Sbjct: 180 cgctcgagcgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatgccg 121
Query: 320 tgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttccca 379
||||| ||||||| || |||||||||||||||||||||| || |||||| ||||||
Sbjct: 120 tgctttgccgcgaattccagcatggcctggcagtccctgatgccgccgacgcagttcccg 61
Query: 380 gccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggc 439
|| | |||||||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 60 gcgatgcccttcccgcccggcacgatggcgtcccccggcagctccagcggcttggtcggc 1
>gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016L11f, mRNA sequence
Length = 758
Score = 222 bits (112), Expect = 2e-056
Identities = 280/336 (83%)
Strand = Plus / Plus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 359 ggctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcga 418
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct: 419 ccgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcc 478
Query: 327 ccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgc 386
||||||| || ||||| ||||||||||| | |||||||| || |||||| |||| ||
Sbjct: 479 ccgcgaagtccagcatcgcctggcagtcgcgcacgctgcccacgccgttcccggccaagc 538
Query: 387 ccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgccca 446
||| ||||| | ||||||||| || |||||| | || |||| |||||| ||||| |
Sbjct: 539 gcttgccgcctccgatgatggcgtaagctggcagcgccaggggctcgctcggggcgccga 598
Query: 447 cgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacg 506
| | |||||| ||||||| |||||| | |||| ||||||| ||| || |||||||| ||
Sbjct: 599 ccaccaccatttgccccatcggctttatcagctccagcaggggcacgagcgggtgccccg 658
Query: 507 ccgacaccgtgtcgatgatgccgtccatggtccccg 542
|||||||||||| |||||||||| ||| |||||||
Sbjct: 659 ccgacaccgtgttaatgatgccgtacatcgtccccg 694
>gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011B06f, mRNA sequence
Length = 1173
Score = 206 bits (104), Expect = 9e-052
Identities = 293/356 (82%)
Strand = Plus / Minus
Query: 437 ggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatc 496
|||||||| || | |||||| ||||||| ||| |||| |||| ||||||| ||| || |
Sbjct: 402 ggcgcgccgaccaccaccatatgccccatcggtttcatcagctccagcagtggcacgagc 343
Query: 497 gggtgccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatc 556
||||||| ||||||||||||||||||||||| |||||| ||||||| || || |||||
Sbjct: 342 gggtgccccgccgacaccgtgtcgatgatgctgtccatcgtccccgcagcagctttcatt 283
Query: 557 tggtcctcgtcccggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctgg 616
|| || ||||| |||||| | |||| |||| |||| |||| ||||| || || | |
Sbjct: 282 tgctcggcgtcctggctgaccaagaacgcgtcggcgcagaggcgctcgagcgcttcttcg 223
Query: 617 cgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttg 676
||||| || | |||| |||||| |||||||| |||||| ||| |||||||||||||||
Sbjct: 222 cgcttcctcggcgacgagctgatcacggtgacggtcatccagaacgccttgccgaacttg 163
Query: 677 acggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttg 736
||||| | ||||||||| || ||||||| || ||| ||||||||||| || ||| |||||
Sbjct: 162 acggccatgtggccgagacccccgaggctgaggactccgaggtgcttccccggcgcgttg 103
Query: 737 aggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgc 792
||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 102 aggccgtactgcatcatcgggctgtacaccgtgacgccggcgcagagcaacggcgc 47
>gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36m01 3', mRNA sequence
Length = 222
Score = 206 bits (104), Expect = 9e-052
Identities = 183/210 (87%)
Strand = Plus / Plus
Query: 385 gcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcc 444
||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| | ||
Sbjct: 8 gcccttcccgcccggcacgatggcgtacgccggcagctccagcggcttggtcggncctcc 67
Query: 445 cacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgcca 504
||||| |||||||||||||| |||||||| |||||| | |||||||| ||||||||||||
Sbjct: 68 cacgaacaccatctgccccatcggcttcatcagcgcgaacagcggcgagatcgggtgcca 127
Query: 505 cgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctc 564
||||||||||||||||| ||||||||||||||| ||| | ||||| |||||| ||
Sbjct: 128 cgccgacaccgtgtcgaggatgccgtccatggtgcccacggtcgcctgcatctgctcggg 187
Query: 565 gtcccggctgatgaggaactcgtccgcgcc 594
||||||||| | |||||||||| ||||||
Sbjct: 188 gtcccggctcaccaggaactcgtncgcgcc 217
>gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D12f, mRNA sequence
Length = 694
Score = 202 bits (102), Expect = 1e-050
Identities = 262/314 (83%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 480 ccagcagcggcgtgatcgggtg-ccacgccgacaccgtgtcgatgatgccgtccatggtc 538
||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct: 688 ccagcaggggcacgatcgggtggccccgccgacaccgtgtcgatgatgccgtccatcgtg 629
Query: 539 cccgtcgccgccttcatctggtcctcgtcccggctgatgaggaactcgtccgcgccgagg 598
|||| |||||||||||| || || ||| |||||| | |||| |||| ||||| ||
Sbjct: 628 cccgccgccgccttcatttgctcggggtcttggctgaccaagaacgcgtcggcgccaagc 569
Query: 599 ttctcgatggcctcctggcgcttgctggcggacgtgctgatgacggtgaccttcatcccg 658
|| || ||||||| |||||| || | |||| |||||| |||||||| ||||||||
Sbjct: 568 cgcttgaccgcctcctcgcgcttcctcggcgacgagctgatcacggtgacggtcatcccg 509
Query: 659 aaggccttgccgaacttgacggcgacgtggccgaggccgccgaggccgacgacgccgagg 718
|| ||||||||||||||||| || | |||||||||||| ||||||||||| ||||| |||
Sbjct: 508 aacgccttgccgaacttgactgccatgtggccgaggcccccgaggccgaccacgcccagg 449
Query: 719 tgcttgccgggctcgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcg 778
|||||||| ||| ||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 448 tgcttgcccggcgcgttgaggccgaactccatcatcgggctgtacaccgtgacgccggcg 389
Query: 779 cagagcagcggcgc 792
||||||||||||||
Sbjct: 388 cagagcagcggcgc 375
>gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015I24f, mRNA sequence
Length = 561
Score = 194 bits (98), Expect = 4e-048
Identities = 218/258 (84%)
Strand = Plus / Minus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 259 ggctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcga 200
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct: 199 ccgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcc 140
Query: 327 ccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgc 386
||||||| || ||||| ||||||||||| | |||||||| || |||||| |||| ||
Sbjct: 139 ccgcgaagtccagcatcgcctggcagtcgcgcacgctgcccacgccgttcccggccaagc 80
Query: 387 ccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgccca 446
||| ||||| | |||||||||||| |||||| | || |||| |||||||||||| |
Sbjct: 79 gcttgccgcctccgatgatggcgtaggctggcagcgccaggggctcgctcggcgcgccga 20
Query: 447 cgatcaccatctgcccca 464
| | ||||||||||||||
Sbjct: 19 ccaccaccatctgcccca 2
>gb|BI777453.2|BI777453 EBro04_SQ001_E09_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_E09 5', mRNA sequence
Length = 432
Score = 174 bits (88), Expect = 3e-042
Identities = 145/164 (88%)
Strand = Plus / Minus
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtgg 688
|||| |||||| |||||||| |||||||||| |||||||||||||||||||| | ||||
Sbjct: 429 gacgagctgatcacggtgacggtcatcccgaacgccttgccgaacttgacggccatgtgg 370
Query: 689 ccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgc 748
||||| || |||||||||||||| ||||||||||| || ||| |||||||||||| ||
Sbjct: 369 ccgagacccccgaggccgacgactccgaggtgcttccccggcgcgttgaggccgtactgc 310
Query: 749 atcatggggctgtacacggtgacgccggcgcagagcagcggcgc 792
||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 309 atcatcgggctgtacaccgtgacgccggcgcagagcaacggcgc 266
>gb|CB877686.1|CB877686 HP05N08T HP Hordeum vulgare subsp. vulgare cDNA clone HP05N08
5-PRIME, mRNA sequence
Length = 266
Score = 172 bits (87), Expect = 1e-041
Identities = 141/159 (88%)
Strand = Plus / Minus
Query: 634 gctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtggccgag 693
|||||| |||||||| |||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 265 gctgatcacggtgacggtcatcccgaacgccttgccgaacttgacggccatgtggccgag 206
Query: 694 gccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatcat 753
|| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||
Sbjct: 205 acccccgaggccgacgactccgaggtgcttccccggcgcgttgaggccgtactgcatcat 146
Query: 754 ggggctgtacacggtgacgccggcgcagagcagcggcgc 792
||||||||||| ||||||||||||||||||| ||||||
Sbjct: 145 cgggctgtacaccgtgacgccggcgcagagcaacggcgc 107
>gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L07f, mRNA sequence
Length = 643
Score = 168 bits (85), Expect = 2e-040
Identities = 160/185 (86%)
Strand = Plus / Minus
Query: 608 gcctcctggcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttg 667
||||||| |||||| || | |||| |||||| |||||||| |||||||||| ||||||
Sbjct: 379 gcctcctcgcgcttcctcggcgacgagctgatcacggtgacggtcatcccgaacgccttg 320
Query: 668 ccgaacttgacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccg 727
||||||||||| || | |||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 319 ccgaacttgactgccatgtggccgaggcccccgaggccgaccacgcccaggtgcttgccc 260
Query: 728 ggctcgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagc 787
||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 259 ggcgcgttgaggccgaactccatcatcgggctgtacaccgtgacgccggcgcagagcagc 200
Query: 788 ggcgc 792
|||||
Sbjct: 199 ggcgc 195
Score = 44.1 bits (22), Expect = 0.008
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 514 cgtgtcgatgatgccgtccatggtccccgtcgccgccttcat 555
|||||||||||| | ||||||||| |||| |||||| |||||
Sbjct: 473 cgtgtcgatgatactgtccatggtgcccgccgccgcattcat 432
>gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 3', mRNA sequence
Length = 550
Score = 167 bits (84), Expect = 8e-040
Identities = 132/148 (89%)
Strand = Plus / Plus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 281 ggctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcga 340
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct: 341 ccgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcc 400
Query: 327 ccgcgaactcgagcatggcctggcagtc 354
||||||| || ||||| |||||||||||
Sbjct: 401 ccgcgaagtccagcatcgcctggcagtc 428
>gb|BI777594.2|BI777594 EBro04_SQ001_L05_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_L05 5', mRNA sequence
Length = 411
Score = 165 bits (83), Expect = 3e-039
Identities = 140/159 (88%)
Strand = Plus / Minus
Query: 634 gctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtggccgag 693
|||||| |||||||| |||||||||| ||||||| |||||||||||| | |||||||||
Sbjct: 407 gctgatcacggtgacggtcatcccgaacgccttgcggaacttgacggccatgtggccgag 348
Query: 694 gccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatcat 753
|| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||
Sbjct: 347 acccccgaggccgacgactccgaggtgcttccccggcgcgttgaggccgtactgcatcat 288
Query: 754 ggggctgtacacggtgacgccggcgcagagcagcggcgc 792
||||||||||| ||||||||||||||||||| ||||||
Sbjct: 287 cgggctgtacaccgtgacgccggcgcagagcaacggcgc 249
>gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006E02f, mRNA sequence
Length = 602
Score = 163 bits (82), Expect = 1e-038
Identities = 292/362 (80%)
Strand = Plus / Minus
Query: 431 ttgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggc 490
||||||||||||| || | |||||||||||| | ||| |||| |||| ||| ||| |||
Sbjct: 534 ttgctcggcgcgctgaccaccaccatctgcccgatcggtttcatcagctccatcagtggc 475
Query: 491 gtgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgcc 550
|| |||||||| ||| ||||| |||||||||||||||||||| ||| ||| || ||
Sbjct: 474 acgagcgggtgccccgctgacacagtgtcgatgatgccgtccatcgtcgccgcagcagca 415
Query: 551 ttcatctggtcctcgtcccggctgatgaggaactcgtccgcgccgaggttctcgatggcc 610
||||| || || ||||| |||||| | |||| |||| || || ||| ||||| |||
Sbjct: 414 ttcatgtgctcggcgtcctggctgaccaagaacgcgtcggctccaaggcgctcgagcgcc 355
Query: 611 tcctggcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccg 670
|||| |||||| || | |||| |||||| |||||||| |||||||||| |||||||||
Sbjct: 354 tcctcgcgcttcctcggcgacgagctgatcacggtgacggtcatcccgaacgccttgccg 295
Query: 671 aacttgacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggc 730
||||||||| | | ||| ||||| || | |||||| ||||| ||||||||||| || |||
Sbjct: 294 aacttgacgcccatgtgtccgagaccccagaggcccacgactccgaggtgcttccccggc 235
Query: 731 tcgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggc 790
||| ||| |||| ||||||| |||||||||||||| |||||||| ||||||| ||||
Sbjct: 234 gcgtcgagtccgtactgcatcatcgggctgtacacggttacgccggctcagagcaacggc 175
Query: 791 gc 792
||
Sbjct: 174 gc 173
>gb|CX662371.1|CX662371 EST 159 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P159 5', mRNA sequence
Length = 512
Score = 163 bits (82), Expect = 1e-038
Identities = 140/160 (87%)
Strand = Plus / Minus
Query: 200 gagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagc 259
|||| ||||||||| |||| ||||||||| |||||||||||||||||||||||| |||||
Sbjct: 317 gagcngaggctgcccgcgatgtcgatgacaaagcggtagcggacgtcgttcttcgcgagc 258
Query: 260 cgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccg 319
||||| | ||||||||||||||||||||||| || ||||| ||||| || ||| |||
Sbjct: 257 cgctcgagcgccgtgttgacgtagtccatctttatcacctccacctccgcggtgatnccg 198
Query: 320 tgcttccccgcgaactcgagcatggcctggcagtccctga 359
||||| ||||||| || ||||||||||||||||||||||
Sbjct: 197 tgctttgccgcgaattccagcatggcctggcagtccctga 158
>gb|BF623534.2|BF623534 HVSMEa0002J16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002J16f, mRNA sequence
Length = 834
Score = 161 bits (81), Expect = 5e-038
Identities = 159/185 (85%)
Strand = Plus / Minus
Query: 608 gcctcctggcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttg 667
||||||| |||||| || | |||| |||||| ||||||| |||||||||| ||||||
Sbjct: 714 gcctcctcgcgcttcctcggcgacgagctgatcccggtgacggtcatcccgaacgccttg 655
Query: 668 ccgaacttgacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccg 727
|||||||||||||| | ||||||||| || |||||||||||||| || |||||||| ||
Sbjct: 654 ccgaacttgacggccatgtggccgagacctccgaggccgacgactccaaggtgcttcccc 595
Query: 728 ggctcgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagc 787
||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||| |
Sbjct: 594 ggcgcgttgaggccgtactgcatcatcgggctgtacaccgtgacgccggcgcagagcaac 535
Query: 788 ggcgc 792
|||||
Sbjct: 534 ggcgc 530
>gb|BJ451867.1|BJ451867 BJ451867 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36m01 5', mRNA sequence
Length = 168
Score = 159 bits (80), Expect = 2e-037
Identities = 142/163 (87%)
Strand = Plus / Minus
Query: 317 ccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttc 376
|||||||| || |||| || |||||||||||||||||||||| || |||||| ||||
Sbjct: 168 ccgtgctttgccncgaattccagcatggcctggcagtccctgatgccgccgacgcagttc 109
Query: 377 ccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctc 436
|| || | ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct: 108 ccggcgatgcccttcccgcccggcacgatggcgtacgccggcagctccagcggcttggtc 49
Query: 437 ggcgcgcccacgatcaccatctgccccagcggcttcagcagcg 479
||| | ||||||| |||||||||||||| |||||||| |||||
Sbjct: 48 ggccctcccacgaacaccatctgccccatcggcttcatcagcg 6
>gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. vulgare cDNA clone HR01B18
5-PRIME, mRNA sequence
Length = 480
Score = 159 bits (80), Expect = 2e-037
Identities = 128/144 (88%)
Strand = Plus / Minus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 154 ggctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcga 95
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct: 94 ccgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcc 35
Query: 327 ccgcgaactcgagcatggcctggc 350
||||||| || ||||| |||||||
Sbjct: 34 ccgcgaagtccagcatcgcctggc 11
>gb|AV921385.1|AV921385 AV921385 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23e03 3', mRNA sequence
Length = 573
Score = 151 bits (76), Expect = 5e-035
Identities = 178/212 (83%)
Strand = Plus / Plus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||| |
Sbjct: 362 ggctgccggcgacgtcgatgacgaagcggtatctcacgtcgttcctctccagccgctcga 421
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 422 ccgccgtattgacgtagtccatcttgacgacctcgacgtcggcggtgatgccgtgcttcg 481
Query: 327 ccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgc 386
||||||| || ||||| ||||||||| | ||||||||| || |||||| |||||||
Sbjct: 482 ccgcgaagtccagcatcgcctggcagctgccgacgctgcccacgaggttcccggccacgc 541
Query: 387 ccttcccgcccggcacgatggcgtaggccggc 418
||| ||||| | ||||||||||||||||
Sbjct: 542 gcttgccgccgccgatgatggcgtaggccggc 573
>gb|AL503387.1|AL503387 AL503387 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01P08T 5', mRNA sequence
Length = 697
Score = 147 bits (74), Expect = 8e-034
Identities = 135/156 (86%)
Strand = Plus / Minus
Query: 635 ctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtggccgagg 694
||||| |||||||| |||||||||| |||||||||||||||||| | | |||||||||
Sbjct: 697 ctgatcacggtgacggtcatcccgaacgccttgccgaacttgacgaccatgtggccgaga 638
Query: 695 ccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatcatg 754
|| |||||||||||||| ||||||||||| || ||| ||| |||||||| |||||||
Sbjct: 637 cccccgaggccgacgactccgaggtgcttccccggcgcgtngaggccgtactgcatcatc 578
Query: 755 gggctgtacacggtgacgccggcgcagagcagcggc 790
|| |||||||| ||||||||||||||||||| ||||
Sbjct: 577 ggnctgtacaccgtgacgccggcgcagagcaacggc 542
>gb|AV913778.1|AV913778 AV913778 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23e03 5', mRNA sequence
Length = 497
Score = 147 bits (74), Expect = 8e-034
Identities = 128/146 (87%)
Strand = Plus / Minus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||| |
Sbjct: 230 ggctgccggcgacgtcgatgacgaagcggtatctcacgtcgttcctctccagccgctcga 171
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 170 ccgccgtattgacgtagtccatcttgacgacctcgacgtcggcggtgatgccgtgcttcg 111
Query: 327 ccgcgaactcgagcatggcctggcag 352
||||||| || ||||| |||||||||
Sbjct: 110 ccgcgaagtccagcatcgcctggcag 85
>gb|CA010065.1|CA010065 HT11L08u HT Hordeum vulgare subsp. vulgare cDNA clone HT11L08
3-PRIME, mRNA sequence
Length = 276
Score = 141 bits (71), Expect = 5e-032
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
||||||||||||||||||||||||||||||| | ||||||||||| || |||||||| |
Sbjct: 143 ggctgccggcgacgtcgatgacgaagcggtacctcacgtcgttcttttccagccgctcga 202
Query: 267 tggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcc 326
||||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct: 203 ccgccgtgttgacgtagtccatcttgacgacctcgacgtccgcggtgatgccgtgcttcc 262
Query: 327 ccgcgaa 333
|||||||
Sbjct: 263 ccgcgaa 269
>gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_G19 5', mRNA sequence
Length = 421
Score = 139 bits (70), Expect = 2e-031
Identities = 129/149 (86%)
Strand = Plus / Minus
Query: 403 gatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatctgccc 462
|||||||||||| |||||| | || |||| ||| |||||||| || | ||||||||||||
Sbjct: 366 gatggcgtaggctggcagcgccaggggctcgctnggcgcgccgaccaccaccatctgccc 307
Query: 463 cagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgtcgat 522
|| |||||||| |||| ||||||| ||| || |||||||| ||||||||||||||||||
Sbjct: 306 catcggcttcatcagctccagcagtggcacgagcgggtgccccgccgacaccgtgtcgat 247
Query: 523 gatgccgtccatggtccccgtcgccgcct 551
|||||||||||| ||||||| ||| ||||
Sbjct: 246 gatgccgtccatcgtccccgccgcagcct 218
Score = 60.0 bits (30), Expect = 1e-007
Identities = 78/94 (82%)
Strand = Plus / Minus
Query: 580 gaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcggacgtgctgat 639
|||| |||| ||||||||| ||||| ||||||| |||||| || | |||| ||||||
Sbjct: 94 gaacgcgtcggcgccgaggcgctcgagcgcctcctcgcgcttcctcggcgacgagctgat 35
Query: 640 gacggtgaccttcatcccgaaggccttgccgaac 673
|||||||| |||||||||| ||||||||||||
Sbjct: 34 cacggtgacggtcatcccgaacgccttgccgaac 1
>gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003A09f, mRNA sequence
Length = 482
Score = 125 bits (63), Expect = 3e-027
Identities = 101/114 (88%)
Strand = Plus / Minus
Query: 442 gcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtg 501
|||||| | ||||| ||||||| ||||||||||||| ||||||| ||| |||||||||
Sbjct: 206 gcccaccaccaccagctgccccntcggcttcagcagctccagcaggggcacgatcgggtg 147
Query: 502 ccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcat 555
|| |||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 146 ccccgccgacaccgtgtcgatgatgccgtccatcgtgcccgccgccgccttcat 93
>gb|BQ458310.1|BQ458310 HA05J23r HA Hordeum vulgare subsp. vulgare cDNA clone HA05J23
5-PRIME, mRNA sequence
Length = 427
Score = 123 bits (62), Expect = 1e-026
Identities = 232/286 (81%), Gaps = 2/286 (0%)
Strand = Plus / Minus
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcc 568
|||||||||| |||||||| |||||||| | | ||| |||||||||| ||| |||||
Sbjct: 363 gacaccgtgtttatgatgccatccatggtgctcaccgcagccttcatctcgtcggcgtcc 304
Query: 569 cggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgc-tggc 627
||||| || |||| |||| ||||| || |||||| ||||||||| ||| | ||||
Sbjct: 303 ttgctgacgacgaacgcgtcagcgccaagcctctcgagggcctcctgcttcttccctggc 244
Query: 628 ggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtg 687
| ||| |||||| || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 243 g-acgagctgatcaccgtcaccttcatcccaaaggctttgccgaacttgacggcgacgtg 185
Query: 688 gccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcg 747
||| || ||||| || || | ||||| |||||| ||||| |||| || ||||||
Sbjct: 184 gcccagtccgcccagtcccagcacgccaaggtgcaacccgggaacgttcagcccgtggta 125
Query: 748 catcatggggctgtacacggtgacgccggcgcagagcagcggcgcg 793
| ||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 124 cttcatggggctgtacacggtgatgccggcgcacagcaggggcgcg 79
>gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
5-PRIME, mRNA sequence
Length = 573
Score = 123 bits (62), Expect = 1e-026
Identities = 232/286 (81%), Gaps = 2/286 (0%)
Strand = Plus / Minus
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcc 568
|||||||||| |||||||| |||||||| | | ||| |||||||||| ||| |||||
Sbjct: 403 gacaccgtgtttatgatgccatccatggtgctcaccgcagccttcatctcgtcggcgtcc 344
Query: 569 cggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgc-tggc 627
||||| || |||| |||| ||||| || |||||| ||||||||| ||| | ||||
Sbjct: 343 ttgctgacgacgaacgcgtcagcgccaagcctctcgagggcctcctgcttcttccctggc 284
Query: 628 ggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtg 687
| ||| |||||| || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 283 g-acgagctgatcaccgtcaccttcatcccaaaggctttgccgaacttgacggcgacgtg 225
Query: 688 gccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcg 747
||| || ||||| || || | ||||| |||||| ||||| |||| || ||||||
Sbjct: 224 gcccagtccgcccagtcccagcacgccaaggtgcaacccgggaacgttcagcccgtggta 165
Query: 748 catcatggggctgtacacggtgacgccggcgcagagcagcggcgcg 793
| ||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 164 cttcatggggctgtacacggtgatgccggcgcacagcaggggcgcg 119
>gb|BF259036.2|BF259036 HVSMEf0017H13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017H13f, mRNA sequence
Length = 796
Score = 117 bits (59), Expect = 7e-025
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 662 gccttgccgaacttgacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgc 721
|||||||||||||| ||||| | |||||| | || |||||||||||||| |||||||||
Sbjct: 460 gccttgccgaacttaacggccatgtggccaaaacctccgaggccgacgactccgaggtgc 401
Query: 722 ttgccgggctcgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcag 781
|| || ||| |||||||||||| ||||||| |||||| |||| |||||||||||||||
Sbjct: 400 ttccccggcgcgttgaggccgtactgcatcatcgggctgcacaccgtgacgccggcgcag 341
Query: 782 agcagcggcgc 792
|||| ||||||
Sbjct: 340 agcaacggcgc 330
>gb|BU994106.1|BU994106 HM05M03r HM Hordeum vulgare subsp. vulgare cDNA clone HM05M03
5-PRIME, mRNA sequence
Length = 648
Score = 113 bits (57), Expect = 1e-023
Identities = 138/165 (83%)
Strand = Plus / Minus
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtgg 688
|||| |||||| || || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 648 gacgagctgatcaccgtcaccttcatcccaaaggctttgccgaacttgacggcgacgtgg 589
Query: 689 ccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgc 748
|| || ||||| || || | ||||| |||||| ||||| |||| || |||||| |
Sbjct: 588 cccagtccgcccagtcccagcacgccaaggtgcaacccgggaacgttcagcccgtggtac 529
Query: 749 atcatggggctgtacacggtgacgccggcgcagagcagcggcgcg 793
||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 528 ttcatggggctgtacacggtgatgccggcgcacagcaggggcgcg 484
>gb|BQ761570.1|BQ761570 EBem10_SQ001_K03_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_K03 5', mRNA sequence
Length = 118
Score = 111 bits (56), Expect = 4e-023
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
|||||||||||||||||||||||||| | |||||||||||||| |||||||| | |||
Sbjct: 95 ccggcgacgtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcaaccgcc 36
Query: 272 gtgttgacgtagtccatcttgatgacctcgac 303
|||||||||||||||||||| | |||||||||
Sbjct: 35 gtgttgacgtagtccatcttaacgacctcgac 4
>gb|AL500806.1|AL500806 AL500806 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01P08u 3', mRNA sequence
Length = 248
Score = 105 bits (53), Expect = 3e-021
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 207 ggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctcca 266
|||||||||||| |||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct: 165 ggctgccggcgangtcgatgacgaagcggtacctcacgtcgttcttctccagccgctcga 224
Query: 267 tggccgtgttgacgtagtccatct 290
||||||||||||||||||||||
Sbjct: 225 ccgccgtgttgacgtagtccatct 248
>gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006J13f, mRNA sequence
Length = 864
Score = 97.6 bits (49), Expect = 6e-019
Identities = 221/277 (79%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 403 gatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatctgccc 462
||||||||||||||| |||| |||||| |||| ||||||||||| | ||||| |
Sbjct: 304 gatggcgtaggccggaagctgcagcggcgtgctgggcgcgcccaccaccaccagggcgcg 245
Query: 463 cagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgtcgat 522
| |||||||||||| ||||||| ||| ||||||||||| |||||||||||||| ||
Sbjct: 244 ggggggcttcagcagctccagcaggggcacgatcgggtgccccgccgacaccgtgtaaat 185
Query: 523 gatgccgtccatggtccccgtcgcc-gccttcatctggtcctcgtcccggctgatgagga 581
|||||||||||| || |||| |||| |||||||| || || ||| |||||| | ||
Sbjct: 184 gatgccgtccatcgtgcccgccgccagccttcatttgctcggggtcttggctgaccaaga 125
Query: 582 actcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcggacgtgctgatga 641
|| |||| ||||| || || || ||||||| |||||| || | |||| |||||| |
Sbjct: 124 acgcgtcggcgccaagccgcttgaccgcctcctcgcgcttcctcggcgacgagctgatca 65
Query: 642 cggtgaccttcatcccgaaggccttgccgaacttgac 678
||||||| |||||||||| |||||||||||||||||
Sbjct: 64 cggtgacggtcatcccgaacgccttgccgaacttgac 28
>gb|CA014567.1|CA014567 HT11L08r HT Hordeum vulgare subsp. vulgare cDNA clone HT11L08
5-PRIME, mRNA sequence
Length = 622
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 707 acgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatcatggggctgtacacg 766
||||| ||||||||||| || ||| |||||||||||| ||||||| |||||||||||
Sbjct: 622 acgactccgaggtgcttccccggcgcgttgaggccgtactgcatcatcgggctgtacacc 563
Query: 767 gtgacgccggcgcagagcagcggcgc 792
||||||||||||||||||| ||||||
Sbjct: 562 gtgacgccggcgcagagcaacggcgc 537
>gb|AL509635.1|AL509635 AL509635 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02G17u 3',
mRNA sequence
Length = 443
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 249 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 308
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 309 tggttgacgtagtccatcttgacgacctcga 339
>gb|AL510922.1|AL510922 AL510922 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06G20u 3',
mRNA sequence
Length = 474
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 175 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 234
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 235 tggttgacgtagtccatcttgacgacctcga 265
>gb|BE602616.3|BE602616 HVSMEh0100I13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100I13f, mRNA sequence
Length = 423
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 102 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 43
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 42 tggttgacgtagtccatcttgacgacctcga 12
>gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. vulgare cDNA clone HM01F04
3-PRIME, mRNA sequence
Length = 600
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 124 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 183
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 184 tggttgacgtagtccatcttgacgacctcga 214
>gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. vulgare cDNA clone HM03H06
3-PRIME, mRNA sequence
Length = 486
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 124 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 183
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 184 tggttgacgtagtccatcttgacgacctcga 214
>gb|BQ661689.1|BQ661689 HM04O09u HM Hordeum vulgare subsp. vulgare cDNA clone HM04O09
3-PRIME, mRNA sequence
Length = 525
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 247 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 306
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 307 tggttgacgtagtccatcttgacgacctcga 337
>gb|BQ761045.1|BQ761045 EBro04_SQ001_P08a_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_P08a 5', mRNA sequence
Length = 80
Score = 85.7 bits (43), Expect = 2e-015
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 451 caccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccga 510
|||||||||||||| |||||||| |||| ||||||| ||| || |||||||| ||||||
Sbjct: 75 caccatctgccccatcggcttcatcagctccagcagtggcacgagcgggtgccccgccga 16
Query: 511 caccgtgtcgatgat 525
|||||||||||||||
Sbjct: 15 caccgtgtcgatgat 1
>gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. vulgare cDNA clone HI08G13
3-PRIME, mRNA sequence
Length = 579
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 168 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 227
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 228 tggttgacgtagtccatcttgacgacctcga 258
>gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I05
3-PRIME, mRNA sequence
Length = 621
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 145 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 204
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 205 tggttgacgtagtccatcttgacgacctcga 235
>gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G11
3-PRIME, mRNA sequence
Length = 524
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 212 ccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggcc 271
||||||||||||| ||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct: 145 ccggcgacgtcgacgacgaagcggtagcgcacgtcgttgcgctcgagcctctcgagcgcc 204
Query: 272 gtgttgacgtagtccatcttgatgacctcga 302
|||||||||||||||||||| ||||||||
Sbjct: 205 tggttgacgtagtccatcttgacgacctcga 235
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,235
Number of Sequences: 312970
Number of extensions: 142235
Number of successful extensions: 46116
Number of sequences better than 0.5: 107
Number of HSP's better than 0.5 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45914
Number of HSP's gapped (non-prelim): 179
length of query: 921
length of database: 175,134,539
effective HSP length: 19
effective length of query: 902
effective length of database: 169,188,109
effective search space: 152607674318
effective search space used: 152607674318
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)