BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478075.2.1
(807 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U96096.1|HVU96096 Hordeum vulgare endo-1,3-beta-glucanas... 351 2e-095
gb|BM370310.2|BM370310 EBro08_SQ003_M21_R root, 3 week, dro... 345 1e-093
gb|CA017450.1|CA017450 HV05D22r HV Hordeum vulgare subsp. v... 264 4e-069
gb|BM444766.1|BM444766 EBem09_SQ006_G13_R embryo, 1 Day ger... 212 1e-053
gb|BF258887.2|BF258887 HVSMEf0016P05f Hordeum vulgare seedl... 100 1e-019
gb|BE601595.2|BE601595 HVSMEh0098M24f Hordeum vulgare 5-45 ... 78 5e-013
emb|AJ271367.1|HVU271367 Hordeum vulgare mRNA for beta-1,3-... 78 5e-013
gb|AF515785.1| Hordeum vulgare subsp. vulgare beta-1,3-gluc... 78 5e-013
gb|AF479647.2| Hordeum vulgare subsp. vulgare beta-1,3-gluc... 78 5e-013
gb|BQ664638.1|BQ664638 HV04D23u HV Hordeum vulgare subsp. v... 58 5e-007
gb|CB884195.1|CB884195 HV09B24r HV Hordeum vulgare subsp. v... 58 5e-007
gb|CB884196.1|CB884196 HV09B24u HV Hordeum vulgare subsp. v... 58 5e-007
gb|CB884203.1|CB884203 HV10H06u HV Hordeum vulgare subsp. v... 58 5e-007
gb|CB884210.1|CB884210 HV12O06u HV Hordeum vulgare subsp. v... 58 5e-007
gb|CB884213.1|CB884213 HV14A09u HV Hordeum vulgare subsp. v... 58 5e-007
gb|BI950007.1|BI950007 HVSMEl0017K20f Hordeum vulgare spike... 50 1e-004
gb|BI950008.1|BI950008 HVSMEl0017K22f Hordeum vulgare spike... 50 1e-004
gb|BI954588.1|BI954588 HVSMEm0018L20f Hordeum vulgare green... 50 1e-004
gb|BI957130.1|BI957130 HVSMEn0007K04f Hordeum vulgare rachi... 50 1e-004
gb|BF064576.1|BF064576 HV_CEb0015P01f Hordeum vulgare seedl... 50 1e-004
gb|BF264980.2|BF264980 HV_CEa0010O18f Hordeum vulgare seedl... 50 1e-004
gb|BG415255.2|BG415255 HVSMEk0005L24f Hordeum vulgare testa... 50 1e-004
gb|AV923570.1|AV923570 AV923570 K. Sato unpublished cDNA li... 50 1e-004
gb|AV923914.1|AV923914 AV923914 K. Sato unpublished cDNA li... 50 1e-004
gb|AV925542.1|AV925542 AV925542 K. Sato unpublished cDNA li... 50 1e-004
gb|AV926710.1|AV926710 AV926710 K. Sato unpublished cDNA li... 50 1e-004
gb|AV927218.1|AV927218 AV927218 K. Sato unpublished cDNA li... 50 1e-004
gb|AV927361.1|AV927361 AV927361 K. Sato unpublished cDNA li... 50 1e-004
gb|AV928013.1|AV928013 AV928013 K. Sato unpublished cDNA li... 50 1e-004
gb|AV928246.1|AV928246 AV928246 K. Sato unpublished cDNA li... 50 1e-004
gb|AV928494.1|AV928494 AV928494 K. Sato unpublished cDNA li... 50 1e-004
gb|AV928558.1|AV928558 AV928558 K. Sato unpublished cDNA li... 50 1e-004
gb|AV929134.1|AV929134 AV929134 K. Sato unpublished cDNA li... 50 1e-004
gb|AV930490.1|AV930490 AV930490 K. Sato unpublished cDNA li... 50 1e-004
gb|BM443712.1|BM443712 EBem09_SQ001_E03_R embryo, 1 Day ger... 50 1e-004
gb|BJ447497.1|BJ447497 BJ447497 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ449157.1|BJ449157 BJ449157 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ455256.1|BJ455256 BJ455256 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ456617.1|BJ456617 BJ456617 K. Sato unpublished cDNA li... 50 1e-004
gb|BQ465340.1|BQ465340 HU03F15r HU Hordeum vulgare subsp. v... 50 1e-004
gb|BQ468175.1|BQ468175 HP01E06T HP Hordeum vulgare subsp. v... 50 1e-004
gb|BQ664073.1|BQ664073 HV01J14w HV Hordeum vulgare subsp. v... 50 1e-004
gb|BQ766640.1|BQ766640 EBro08_SQ006_O15_R root, 3 week, dro... 50 1e-004
gb|BQ766726.1|BQ766726 EBro08_SQ006_O23_R root, 3 week, dro... 50 1e-004
gb|BQ768478.1|BQ768478 EBro08_SQ011_G22_R root, 3 week, dro... 50 1e-004
gb|CA018533.1|CA018533 HV08O12r HV Hordeum vulgare subsp. v... 50 1e-004
gb|BJ543926.1|BJ543926 BJ543926 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ545156.1|BJ545156 BJ545156 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ545434.1|BJ545434 BJ545434 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ546633.1|BJ546633 BJ546633 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ547063.1|BJ547063 BJ547063 K. Sato unpublished cDNA li... 50 1e-004
gb|BJ548188.1|BJ548188 BJ548188 K. Sato unpublished cDNA li... 50 1e-004
gb|CB877858.1|CB877858 HP06G23T HP Hordeum vulgare subsp. v... 50 1e-004
gb|CB879399.1|CB879399 HP02B03w HP Hordeum vulgare subsp. v... 50 1e-004
gb|CD663219.1|CD663219 UCRHV18_04da12_b1 Drought-stressed D... 50 1e-004
gb|DW474925.1|DW474925 1-n92 Subtracted libraries from epid... 50 1e-004
gb|CK125397.1|CK125397 BES1824107o07 BES1824 Hordeum vulgar... 50 1e-004
gb|M96939.1|BLYGLCNHV Hordeum vulgare glucan endo-1,3-beta-... 50 1e-004
emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanas... 50 1e-004
emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D... 50 1e-004
emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucana... 50 1e-004
gb|BF263831.2|BF263831 HV_CEa0007M17f Hordeum vulgare seedl... 48 5e-004
gb|AL509694.1|AL509694 AL509694 Hordeum vulgare Barke devel... 46 0.002
gb|AL510583.1|AL510583 AL510583 Hordeum vulgare Barke devel... 46 0.002
gb|AL511140.1|AL511140 AL511140 Hordeum vulgare Barke devel... 46 0.002
gb|BF258041.2|BF258041 HVSMEf0014J07f Hordeum vulgare seedl... 46 0.002
gb|BF260325.2|BF260325 HVSMEf0021L05f Hordeum vulgare seedl... 46 0.002
gb|BF256955.3|BF256955 HVSMEf0011H13f Hordeum vulgare seedl... 46 0.002
gb|BJ450923.1|BJ450923 BJ450923 K. Sato unpublished cDNA li... 46 0.002
gb|BJ454422.1|BJ454422 BJ454422 K. Sato unpublished cDNA li... 46 0.002
gb|BJ462228.1|BJ462228 BJ462228 K. Sato unpublished cDNA li... 46 0.002
gb|BU980481.1|BU980481 HA20M14r HA Hordeum vulgare subsp. v... 46 0.002
gb|BU981210.1|BU981210 HA22P03r HA Hordeum vulgare subsp. v... 46 0.002
gb|BU981251.1|BU981251 HA23B03r HA Hordeum vulgare subsp. v... 46 0.002
gb|CB876783.1|CB876783 HP02G13T HP Hordeum vulgare subsp. v... 46 0.002
gb|CB877331.1|CB877331 HP04H07T HP Hordeum vulgare subsp. v... 46 0.002
gb|CB878498.1|CB878498 HP08L24T HP Hordeum vulgare subsp. v... 46 0.002
gb|CB879474.1|CB879474 HP02G13w HP Hordeum vulgare subsp. v... 46 0.002
gb|CB879505.1|CB879505 HP02I04w HP Hordeum vulgare subsp. v... 46 0.002
gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-... 46 0.002
gb|AY239038.1| Hordeum vulgare subsp. vulgare clone CEa0006... 46 0.002
gb|AY239039.1| Hordeum vulgare subsp. vulgare clone SMEm002... 46 0.002
gb|BE060779.2|BE060779 HVSMEg0013F11f Hordeum vulgare pre-a... 44 0.007
gb|BI950595.1|BI950595 HVSMEl0021J13f Hordeum vulgare spike... 44 0.007
gb|BM816983.1|BM816983 HC113B09_SK.ab1 HC Hordeum vulgare s... 44 0.007
gb|AJ434433.1|AJ434433 AJ434433 S00002 Hordeum vulgare subs... 44 0.007
gb|BQ465583.1|BQ465583 HU04B11r HU Hordeum vulgare subsp. v... 44 0.007
gb|BQ465778.1|BQ465778 HU04K16r HU Hordeum vulgare subsp. v... 44 0.007
gb|BQ663931.1|BQ663931 HU04K16u HU Hordeum vulgare subsp. v... 44 0.007
gb|BM370290.2|BM370290 EBro08_SQ003_L21_R root, 3 week, dro... 44 0.007
gb|BE420625.1|BE420625 HWM000.H02 ITEC HWM Barley Leaf Libr... 42 0.028
gb|BE421248.1|BE421248 HWM007.D01 ITEC HWM Barley Leaf Libr... 42 0.028
gb|BE421306.1|BE421306 HWM007.H11 ITEC HWM Barley Leaf Libr... 42 0.028
gb|BE421550.1|BE421550 HWM010.E03 ITEC HWM Barley Leaf Libr... 42 0.028
gb|AL450912.1|AL450912 AL450912 Hordeum vulgare Barke etiol... 42 0.028
gb|AL500117.1|AL500117 AL500117 Hordeum vulgare Barke etiol... 42 0.028
gb|AL500833.1|AL500833 AL500833 Hordeum vulgare Barke roots... 42 0.028
gb|BG310053.1|BG310053 HVSMEc0016D10f Hordeum vulgare seedl... 42 0.028
gb|BF254405.2|BF254405 HVSMEf0003O17f Hordeum vulgare seedl... 42 0.028
gb|BI947339.1|BI947339 HVSMEl0005D01f Hordeum vulgare spike... 42 0.028
gb|BI960651.1|BI960651 HVSMEn0025K02f Hordeum vulgare rachi... 42 0.028
gb|BF258566.3|BF258566 HVSMEf0016B09f Hordeum vulgare seedl... 42 0.028
gb|BE215234.3|BE215234 HV_CEb0006D20f Hordeum vulgare seedl... 42 0.028
gb|AV909148.1|AV909148 AV909148 K. Sato unpublished cDNA li... 42 0.028
gb|AV911030.1|AV911030 AV911030 K. Sato unpublished cDNA li... 42 0.028
gb|AV930079.1|AV930079 AV930079 K. Sato unpublished cDNA li... 42 0.028
gb|AV931182.1|AV931182 AV931182 K. Sato unpublished cDNA li... 42 0.028
gb|AV931924.1|AV931924 AV931924 K. Sato unpublished cDNA li... 42 0.028
gb|BJ449523.1|BJ449523 BJ449523 K. Sato unpublished cDNA li... 42 0.028
gb|BJ452679.1|BJ452679 BJ452679 K. Sato unpublished cDNA li... 42 0.028
gb|BJ452749.1|BJ452749 BJ452749 K. Sato unpublished cDNA li... 42 0.028
gb|BJ456958.1|BJ456958 BJ456958 K. Sato unpublished cDNA li... 42 0.028
gb|BJ458099.1|BJ458099 BJ458099 K. Sato unpublished cDNA li... 42 0.028
gb|BJ460231.1|BJ460231 BJ460231 K. Sato unpublished cDNA li... 42 0.028
gb|BJ460297.1|BJ460297 BJ460297 K. Sato unpublished cDNA li... 42 0.028
gb|BJ461506.1|BJ461506 BJ461506 K. Sato unpublished cDNA li... 42 0.028
gb|BQ464233.1|BQ464233 HF01L09T HF Hordeum vulgare subsp. v... 42 0.028
gb|BQ659785.1|BQ659785 HF01L09w HF Hordeum vulgare subsp. v... 42 0.028
gb|BQ661780.1|BQ661780 HP01E06w HP Hordeum vulgare subsp. v... 42 0.028
gb|BQ661884.1|BQ661884 HP01K19w HP Hordeum vulgare subsp. v... 42 0.028
gb|BQ663609.1|BQ663609 HU03F15u HU Hordeum vulgare subsp. v... 42 0.028
gb|BQ765468.1|BQ765468 EBro03_SQ007_C08_R root, 3 week, wat... 42 0.028
gb|BQ766009.1|BQ766009 EBro03_SQ008_D24_R root, 3 week, wat... 42 0.028
gb|BQ767737.1|BQ767737 EBro08_SQ009_P13_R root, 3 week, dro... 42 0.028
gb|BU995473.1|BU995473 HM10F22r HM Hordeum vulgare subsp. v... 42 0.028
gb|CA016370.1|CA016370 HV09A23u HV Hordeum vulgare subsp. v... 42 0.028
gb|CA016459.1|CA016459 HV08O12u HV Hordeum vulgare subsp. v... 42 0.028
gb|CA017203.1|CA017203 HV14G01u HV Hordeum vulgare subsp. v... 42 0.028
gb|CA017223.1|CA017223 HV14D06u HV Hordeum vulgare subsp. v... 42 0.028
gb|CB879831.1|CB879831 HP03O01w HP Hordeum vulgare subsp. v... 42 0.028
gb|CB882788.1|CB882788 HL02N14w HL Hordeum vulgare subsp. v... 42 0.028
gb|CB883365.1|CB883365 HQ02A08w HQ Hordeum vulgare subsp. v... 42 0.028
gb|CD662956.1|CD662956 UCRHV18_03db04_b1 Drought-stressed D... 42 0.028
gb|CD663748.1|CD663748 UCRHV18_06ca11_b1 Drought-stressed D... 42 0.028
gb|BE438180.1|BE438180 SFR009.B07F990722 ITEC SFR Barley Le... 40 0.11
gb|BF253425.2|BF253425 HVSMEf0001G05f Hordeum vulgare seedl... 40 0.11
gb|BG343212.2|BG343212 HVSMEg0005B17f Hordeum vulgare pre-a... 40 0.11
gb|AV919542.1|AV919542 AV919542 K. Sato unpublished cDNA li... 40 0.11
gb|CA023567.1|CA023567 HZ46K21r HZ Hordeum vulgare subsp. v... 40 0.11
gb|AL500948.1|AL500948 AL500948 Hordeum vulgare Barke roots... 38 0.43
gb|AL500980.1|AL500980 AL500980 Hordeum vulgare Barke roots... 38 0.43
gb|AL501807.1|AL501807 AL501807 Hordeum vulgare Barke roots... 38 0.43
gb|AL502581.1|AL502581 AL502581 Hordeum vulgare Barke roots... 38 0.43
gb|AL502938.1|AL502938 AL502938 Hordeum vulgare Barke roots... 38 0.43
gb|AL503533.1|AL503533 AL503533 Hordeum vulgare Barke roots... 38 0.43
gb|AL505310.1|AL505310 AL505310 Hordeum vulgare Barke roots... 38 0.43
gb|BF617159.2|BF617159 HVSMEc0014M20f Hordeum vulgare seedl... 38 0.43
gb|BF260601.2|BF260601 HVSMEf0022H04f Hordeum vulgare seedl... 38 0.43
gb|BI949774.1|BI949774 HVSMEl0015O24f Hordeum vulgare spike... 38 0.43
gb|BG417751.1|BG417751 HVSMEk0019F18f Hordeum vulgare testa... 38 0.43
gb|BI959879.1|BI959879 HVSMEn0022D05f Hordeum vulgare rachi... 38 0.43
gb|BF253426.3|BF253426 HVSMEf0001G06f Hordeum vulgare seedl... 38 0.43
gb|AV920665.1|AV920665 AV920665 K. Sato unpublished cDNA li... 38 0.43
gb|AV927161.1|AV927161 AV927161 K. Sato unpublished cDNA li... 38 0.43
gb|AV927196.1|AV927196 AV927196 K. Sato unpublished cDNA li... 38 0.43
gb|AV935512.1|AV935512 AV935512 K. Sato unpublished cDNA li... 38 0.43
gb|AV935605.1|AV935605 AV935605 K. Sato unpublished cDNA li... 38 0.43
gb|AV936427.1|AV936427 AV936427 K. Sato unpublished cDNA li... 38 0.43
gb|AJ434029.1|AJ434029 AJ434029 S00002 Hordeum vulgare subs... 38 0.43
gb|AJ436428.1|AJ436428 AJ436428 S00002 Hordeum vulgare subs... 38 0.43
gb|BJ452965.1|BJ452965 BJ452965 K. Sato unpublished cDNA li... 38 0.43
gb|BJ460512.1|BJ460512 BJ460512 K. Sato unpublished cDNA li... 38 0.43
gb|BJ474202.1|BJ474202 BJ474202 K. Sato unpublished cDNA li... 38 0.43
gb|BJ475587.1|BJ475587 BJ475587 K. Sato unpublished cDNA li... 38 0.43
gb|BJ476543.1|BJ476543 BJ476543 K. Sato unpublished cDNA li... 38 0.43
gb|BJ477016.1|BJ477016 BJ477016 K. Sato unpublished cDNA li... 38 0.43
gb|BJ477087.1|BJ477087 BJ477087 K. Sato unpublished cDNA li... 38 0.43
gb|BQ463995.1|BQ463995 HF01A24T HF Hordeum vulgare subsp. v... 38 0.43
gb|BQ660606.1|BQ660606 HI04H06u HI Hordeum vulgare subsp. v... 38 0.43
gb|BQ665861.1|BQ665861 HZ01G03u HZ Hordeum vulgare subsp. v... 38 0.43
gb|BQ665887.1|BQ665887 HZ01H11u HZ Hordeum vulgare subsp. v... 38 0.43
gb|BM369560.2|BM369560 EBem07_SQ003_P10_R embryo, 28 DPA, n... 38 0.43
gb|BM100648.2|BM100648 EBma01_SQ005_N06_R maternal, 4 DPA, ... 38 0.43
gb|BI779176.2|BI779176 EBro01_SQ003_D16_R root, 3 week, hyd... 38 0.43
gb|BQ760535.1|BQ760535 EBro03_SQ001_E03_R root, 3 week, wat... 38 0.43
gb|BQ762251.1|BQ762251 EBro01_SQ005_C12_R root, 3 week, hyd... 38 0.43
gb|CA015996.1|CA015996 HV10P16u HV Hordeum vulgare subsp. v... 38 0.43
gb|CA016806.1|CA016806 HV05N21u HV Hordeum vulgare subsp. v... 38 0.43
gb|CA020859.1|CA020859 HZ38C06r HZ Hordeum vulgare subsp. v... 38 0.43
gb|CB876412.1|CB876412 HX11D05w HX Hordeum vulgare subsp. v... 38 0.43
gb|CV055327.1|CV055327 BNEL119d11 Barley EST endosperm libr... 38 0.43
gb|CV056667.1|CV056667 BNEL1C6 Barley EST endosperm library... 38 0.43
emb|AM039893.1| Hordeum vulgare sam1 gene for putative AdoM... 38 0.43
>gb|U96096.1|HVU96096 Hordeum vulgare endo-1,3-beta-glucanase (Hv34) gene, partial cds
Length = 2899
Score = 351 bits (177), Expect = 2e-095
Identities = 306/347 (88%), Gaps = 9/347 (2%)
Strand = Plus / Plus
Query: 241 cggtgacggacggcggggcggtgtacactaacatgttcgacgcgatcgtggacgcgacgc 300
||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 2330 cggtgacggacggcgggctggtgtacaccaacatgttcgacgcgatcctggacgcggcgc 2389
Query: 301 acgcggcggtggagaaggccggggtgcaggggctggagctggtggtgtcggagaccggct 360
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
Sbjct: 2390 acgcggcggtggagaaggccggggcgcaggggctggaactggtggtgtcggagaccgggt 2449
Query: 361 ggccgtcggccggcggcg---agggcgccagcgtggagaacgcggcggcgtacaacaaca 417
||||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 2450 ggccgtcgggcggcggcggcacgggcgccaccgtggagaacgcggcggcgtacaataaca 2509
Query: 418 acgtggtgcggca-----cgtc-gacggcggcacccctcggcggcccgggaaggccctgg 471
||||| | ||||| |||| | || |||||| || ||| |||| || |||||| |||
Sbjct: 2510 acgtgatccggcacgcggcgtcgggcgccggcacgccgcggaggccgggcaaggccgtgg 2569
Query: 472 agacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcagcact 531
|||| ||||||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct: 2570 agacgtacctgttcgccatgttcaacgagaaccagaagcccgagggcacggagcagcact 2629
Query: 532 tcggcctcttccagccggacatgagcgaggtctaccacgtcgacttc 578
||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 2630 tcggcctcttccagccggacatgagcgccgtctaccccgtcgacttc 2676
>gb|BM370310.2|BM370310 EBro08_SQ003_M21_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_M21 5', mRNA sequence
Length = 655
Score = 345 bits (174), Expect = 1e-093
Identities = 305/347 (87%), Gaps = 9/347 (2%)
Strand = Plus / Plus
Query: 241 cggtgacggacggcggggcggtgtacactaacatgttcgacgcgatcgtggacgcgacgc 300
||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 47 cggtgacggacggcgggctggtgtacaccaacatgttcgacgcgatcctggacgcggcgc 106
Query: 301 acgcggcggtggagaaggccggggtgcaggggctggagctggtggtgtcggagaccggct 360
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
Sbjct: 107 acgcggcggtggagaaggccggggcgcaggggctggaactggtggtgtcggagaccgggt 166
Query: 361 ggccgtcggccggcggcg---agggcgccagcgtggagaacgcggcggcgtacaacaaca 417
||||||| | |||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 167 ggccgtcnggcggcggcggcacgggcgccaccgtggagaacgcggcggcgtacaataaca 226
Query: 418 acgtggtgcggca-----cgtc-gacggcggcacccctcggcggcccgggaaggccctgg 471
||||| | ||||| |||| | || |||||| || ||| |||| || |||||| |||
Sbjct: 227 acgtgatccggcacgcggcgtcgggcgccggcacgccgcggaggccgggcaaggccgtgg 286
Query: 472 agacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcagcact 531
|||| ||||||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct: 287 agacgtacctgttcgccatgttcaacgagaaccagaagcccgagggcacggagcagcact 346
Query: 532 tcggcctcttccagccggacatgagcgaggtctaccacgtcgacttc 578
||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 347 tcggcctcttccagccggacatgagcgccgtctaccccgtcgacttc 393
>gb|CA017450.1|CA017450 HV05D22r HV Hordeum vulgare subsp. vulgare cDNA clone HV05D22
5-PRIME, mRNA sequence
Length = 492
Score = 264 bits (133), Expect = 4e-069
Identities = 180/195 (92%), Gaps = 3/195 (1%)
Strand = Plus / Plus
Query: 241 cggtgacggacggcggggcggtgtacactaacatgttcgacgcgatcgtggacgcgacgc 300
||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 241 cggtgacggacggcgggctggtgtacaccaacatgttcgacgcgatcctggacgcggcgc 300
Query: 301 acgcggcggtggagaaggccggggtgcaggggctggagctggtggtgtcggagaccggct 360
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 301 acgcggcggtggagaaggccggggcgcaggggctggagctggtggtgtcggagaccgggt 360
Query: 361 ggccgtcggccggcggcg---agggcgccagcgtggagaacgcggcggcgtacaacaaca 417
||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 361 ggccgtcgggcggcggcggcacgggcgccaccgtggagaacgcggcggcgtacaacaaca 420
Query: 418 acgtggtgcggcacg 432
||||| | |||||||
Sbjct: 421 acgtgatccggcacg 435
>gb|BM444766.1|BM444766 EBem09_SQ006_G13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_G13 5', mRNA sequence
Length = 374
Score = 212 bits (107), Expect = 1e-053
Identities = 215/249 (86%), Gaps = 9/249 (3%)
Strand = Plus / Plus
Query: 339 ctggtggtgtcggagaccggctggccgtcggccggcggcga---gggcgccagcgtggag 395
|||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||
Sbjct: 5 ctggtggtgtcggagaccgggtggccgtcgggcggcggcggcacgggcgccaccgtggag 64
Query: 396 aacgcggcggcgtacaacaacaacgtggtgcggcacgt--cgacgg----cggcacccct 449
||||||||||||||||| ||||||||| | ||||||| || ||| |||||| ||
Sbjct: 65 aacgcggcggcgtacaataacaacgtgatccggcacgcggcgtcgggcgccggcacgccg 124
Query: 450 cggcggcccgggaaggccctggagacctacctgttcgccatgttcaacgagaacggcaag 509
||| |||| || |||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct: 125 cggaggccgggcaaggccgtggagacgtacctgttcgccatgttcaacgagaaccagaag 184
Query: 510 gccgagggcgtggagcagcacttcggcctcttccagccggacatgagcgaggtctaccac 569
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 185 cccgagggcacggagcagcacttcggcctcttccagccggacatgagcgccgtctacccc 244
Query: 570 gtcgacttc 578
|||||||||
Sbjct: 245 gtcgacttc 253
>gb|BF258887.2|BF258887 HVSMEf0016P05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016P05f, mRNA sequence
Length = 905
Score = 99.6 bits (50), Expect = 1e-019
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 243 gtgacggacggcggggcggtgtacactaacatgttcgacgcgatcgtggacgcgacgcac 302
||||| |||||||| ||||||||| |||||||||||||||||| || |||| | |||
Sbjct: 327 gtgaccgacggcggtctggtgtacaccaacatgttcgacgcgatcctgtacgcagctcac 386
Query: 303 gcggcggtggagaaggccggggtgcaggggctggagctggtggtgtcggagacc 356
|||||||||||||| ||| ||| ||| |||||||||||||||| |||| |||||
Sbjct: 387 gcggcggtggagaacgcccgggcgcacgggctggagctggtggcgtcgtagacc 440
>gb|BE601595.2|BE601595 HVSMEh0098M24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M24f, mRNA sequence
Length = 636
Score = 77.8 bits (39), Expect = 5e-013
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 274 tgttcgacgcgatcgtggacgcgacgcacgcggcggtggagaaggccggggtgcaggggc 333
||||||||||||| |||||||| | |||||||| ||||||||||||| | || || |
Sbjct: 186 tgttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccggcgcgccggcgg 245
Query: 334 tggagctggtggtgtcggagaccggctggccgtcggccggcgg 376
|| || ||||||||||||||| ||| ||||||||||| |||||
Sbjct: 246 tgaaggtggtggtgtcggagagcgggtggccgtcggcgggcgg 288
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 372 aggcgctggagacgtacatcttcgccatgttcaacgagaac 412
>emb|AJ271367.1|HVU271367 Hordeum vulgare mRNA for beta-1,3-glucanase
Length = 1257
Score = 77.8 bits (39), Expect = 5e-013
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 274 tgttcgacgcgatcgtggacgcgacgcacgcggcggtggagaaggccggggtgcaggggc 333
||||||||||||| |||||||| | |||||||| ||||||||||||| | || || |
Sbjct: 747 tgttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccggcgcgccggcgg 806
Query: 334 tggagctggtggtgtcggagaccggctggccgtcggccggcgg 376
|| || ||||||||||||||| ||| ||||||||||| |||||
Sbjct: 807 tgaaggtggtggtgtcggagagcgggtggccgtcggcgggcgg 849
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 933 aggcgctggagacgtacatcttcgccatgttcaacgagaac 973
>gb|AF515785.1| Hordeum vulgare subsp. vulgare beta-1,3-glucanase II mRNA, complete
cds
Length = 1215
Score = 77.8 bits (39), Expect = 5e-013
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 274 tgttcgacgcgatcgtggacgcgacgcacgcggcggtggagaaggccggggtgcaggggc 333
||||||||||||| |||||||| | |||||||| ||||||||||||| | || || |
Sbjct: 744 tgttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccggcgcgccggcgg 803
Query: 334 tggagctggtggtgtcggagaccggctggccgtcggccggcgg 376
|| || ||||||||||||||| ||| ||||||||||| |||||
Sbjct: 804 tgaaggtggtggtgtcggagagcgggtggccgtcggcgggcgg 846
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 930 aggcgctggagacgtacatcttcgccatgttcaacgagaac 970
>gb|AF479647.2| Hordeum vulgare subsp. vulgare beta-1,3-glucanase gene, complete cds
Length = 2135
Score = 77.8 bits (39), Expect = 5e-013
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 274 tgttcgacgcgatcgtggacgcgacgcacgcggcggtggagaaggccggggtgcaggggc 333
||||||||||||| |||||||| | |||||||| ||||||||||||| | || || |
Sbjct: 1682 tgttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccggcgcgccggcgg 1741
Query: 334 tggagctggtggtgtcggagaccggctggccgtcggccggcgg 376
|| || ||||||||||||||| ||| ||||||||||| |||||
Sbjct: 1742 tgaaggtggtggtgtcggagagcgggtggccgtcggcgggcgg 1784
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 1868 aggcgctggagacgtacatcttcgccatgttcaacgagaac 1908
>gb|BQ664638.1|BQ664638 HV04D23u HV Hordeum vulgare subsp. vulgare cDNA clone HV04D23
3-PRIME, mRNA sequence
Length = 528
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
|||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 499 agctggtggtgtcggagagcgggtggccgtcgggcggcggc 459
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | |||||||||||||||||||||
Sbjct: 368 gagacctacatcttcgccatgttcaacgagaac 336
>gb|CB884195.1|CB884195 HV09B24r HV Hordeum vulgare subsp. vulgare cDNA clone HV09B24
5-PRIME, mRNA sequence
Length = 502
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
|||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 73 agctggtggtgtcggagagcgggtggccgtcgggcggcggc 113
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | |||||||||||||||||||||
Sbjct: 204 gagacctacatcttcgccatgttcaacgagaac 236
>gb|CB884196.1|CB884196 HV09B24u HV Hordeum vulgare subsp. vulgare cDNA clone HV09B24
3-PRIME, mRNA sequence
Length = 534
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
|||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 499 agctggtggtgtcggagagcgggtggccgtcgggcggcggc 459
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | |||||||||||||||||||||
Sbjct: 368 gagacctacatcttcgccatgttcaacgagaac 336
>gb|CB884203.1|CB884203 HV10H06u HV Hordeum vulgare subsp. vulgare cDNA clone HV10H06
3-PRIME, mRNA sequence
Length = 557
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
|||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 390 agctggtggtgtcggagagcgggtggccgtcgggcggcggc 350
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | |||||||||||||||||||||
Sbjct: 259 gagacctacatcttcgccatgttcaacgagaac 227
>gb|CB884210.1|CB884210 HV12O06u HV Hordeum vulgare subsp. vulgare cDNA clone HV12O06
3-PRIME, mRNA sequence
Length = 526
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
|||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 491 agctggtggtgtcggagagcgggtggccgtcgggcggcggc 451
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | |||||||||||||||||||||
Sbjct: 360 gagacctacatcttcgccatgttcaacgagaac 328
>gb|CB884213.1|CB884213 HV14A09u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A09
3-PRIME, mRNA sequence
Length = 556
Score = 58.0 bits (29), Expect = 5e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
|||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 444 agctggtggtgtcggagagcgggtggccgtcgggcggcggc 404
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | |||||||||||||||||||||
Sbjct: 313 gagacctacatcttcgccatgttcaacgagaac 281
>gb|BI950007.1|BI950007 HVSMEl0017K20f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017K20f, mRNA sequence
Length = 449
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 104 agctggtggtgtccgagagcgggtggccgtcagccggcggc 144
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 235 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 291
>gb|BI950008.1|BI950008 HVSMEl0017K22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017K22f, mRNA sequence
Length = 449
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 104 agctggtggtgtccgagagcgggtggccgtcagccggcggc 144
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 235 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 291
>gb|BI954588.1|BI954588 HVSMEm0018L20f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0018L20f, mRNA sequence
Length = 682
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 274 tgttcgacgcgatcgtggacgcgacgcacgcggcggtggagaaggccgg 322
||||||||||||| |||||||| | |||||||| |||||||||||||
Sbjct: 295 tgttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccgg 343
>gb|BI957130.1|BI957130 HVSMEn0007K04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007K04f, mRNA sequence
Length = 560
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 340 tggtggtgtcggagaccggctggccgtcggccggcgg 376
||||||||||||||| ||| ||||||||||| |||||
Sbjct: 99 tggtggtgtcggagagcgggtggccgtcggcgggcgg 135
>gb|BF064576.1|BF064576 HV_CEb0015P01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015P01f, mRNA sequence
Length = 605
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 270 aggcgctggagacgtacatcttcgccatgttcaacgagaac 230
>gb|BF264980.2|BF264980 HV_CEa0010O18f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0010O18f, mRNA sequence
Length = 878
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 366 aggcgctggagacgtacatcttcgccatgttcaacgagaac 406
>gb|BG415255.2|BG415255 HVSMEk0005L24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0005L24f, mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 116 agctggtggtgtccgagagcgggtggccgtcagccggcggc 156
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | ||| |||||||||||||||||
Sbjct: 247 gagacctacgtcttctccatgttcaacgagaac 279
>gb|AV923570.1|AV923570 AV923570 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j20 5', mRNA sequence
Length = 630
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 261 agctggtggtgtccgagagcgggtggccgtcagccggcggc 301
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 392 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 448
>gb|AV923914.1|AV923914 AV923914 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20b23 5', mRNA sequence
Length = 520
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 387 agctggtggtgtccgagagcgggtggccgtcagccggcggc 427
>gb|AV925542.1|AV925542 AV925542 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24m02 5', mRNA sequence
Length = 643
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 275 agctggtggtgtccgagagcgggtggccgtcagccggcggc 315
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 406 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 462
>gb|AV926710.1|AV926710 AV926710 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h17 5', mRNA sequence
Length = 690
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 366 agctggtggtgtccgagagcgggtggccgtcagccggcggc 406
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 497 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 553
>gb|AV927218.1|AV927218 AV927218 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a02 3', mRNA sequence
Length = 691
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 608 agctggtggtgtccgagagcgggtggccgtcagccggcggc 568
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 477 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 421
>gb|AV927361.1|AV927361 AV927361 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1l14 3', mRNA sequence
Length = 619
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 581 agctggtggtgtccgagagcgggtggccgtcagccggcggc 541
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 450 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 394
>gb|AV928013.1|AV928013 AV928013 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j20 3', mRNA sequence
Length = 647
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 605 agctggtggtgtccgagagcgggtggccgtcagccggcggc 565
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 473 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 417
>gb|AV928246.1|AV928246 AV928246 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27i24 3', mRNA sequence
Length = 641
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 615 agctggtggtgtccgagagcgggtggccgtcagccggcggc 575
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 482 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 426
>gb|AV928494.1|AV928494 AV928494 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdk07 3', mRNA sequence
Length = 664
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 601 agctggtggtgtccgagagcgggtggccgtcagccggcggc 561
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 470 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 414
>gb|AV928558.1|AV928558 AV928558 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdn24 3', mRNA sequence
Length = 658
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 614 agctggtggtgtccgagagcgggtggccgtcagccggcggc 574
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 482 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 426
>gb|AV929134.1|AV929134 AV929134 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11b22 3', mRNA sequence
Length = 644
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 604 agctggtggtgtccgagagcgggtggccgtcagccggcggc 564
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 473 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 417
>gb|AV930490.1|AV930490 AV930490 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22m09 3', mRNA sequence
Length = 642
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 602 agctggtggtgtccgagagcgggtggccgtcagccggcggc 562
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 471 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 415
>gb|BM443712.1|BM443712 EBem09_SQ001_E03_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ001_E03 5', mRNA sequence
Length = 350
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 29 aggcgctggagacgtacatcttcgccatgttcaacgagaac 69
>gb|BJ447497.1|BJ447497 BJ447497 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35p18 5', mRNA sequence
Length = 198
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 120 aggcgctggagacgtacatcttcgccatgttcaacgagaac 160
>gb|BJ449157.1|BJ449157 BJ449157 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22k17 5', mRNA sequence
Length = 482
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 475 cctacctgttcgccatgttcaacgagaac 503
||||| |||||||||||||||||||||||
Sbjct: 407 cctacgtgttcgccatgttcaacgagaac 435
>gb|BJ455256.1|BJ455256 BJ455256 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35p18 3', mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 340 tggtggtgtcggagaccggctggccgtcggccggcgg 376
||||||||||||||| ||| ||||||||||| |||||
Sbjct: 406 tggtggtgtcggagagcgggtggccgtcggcgggcgg 370
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 463 aggccctggagacctacctgttcgccatgttcaacgagaac 503
|||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 286 aggcgctggagacgtacatcttcgccatgttcaacgagaac 246
>gb|BJ456617.1|BJ456617 BJ456617 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22k17 3', mRNA sequence
Length = 710
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 475 cctacctgttcgccatgttcaacgagaac 503
||||| |||||||||||||||||||||||
Sbjct: 321 cctacgtgttcgccatgttcaacgagaac 293
>gb|BQ465340.1|BQ465340 HU03F15r HU Hordeum vulgare subsp. vulgare cDNA clone HU03F15
5-PRIME, mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 310 agctggtggtgtccgagagcgggtggccgtcagccggcggc 350
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 441 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 497
>gb|BQ468175.1|BQ468175 HP01E06T HP Hordeum vulgare subsp. vulgare cDNA clone HP01E06
5-PRIME, mRNA sequence
Length = 547
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 48 agctggtggtgtccgagagcgggtggccgtcagccggcggc 88
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 179 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 235
>gb|BQ664073.1|BQ664073 HV01J14w HV Hordeum vulgare subsp. vulgare cDNA clone HV01J14
3-PRIME, mRNA sequence
Length = 441
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | |||||||||||||||||||||
Sbjct: 368 gagacctacatcttcgccatgttcaacgagaac 336
>gb|BQ766640.1|BQ766640 EBro08_SQ006_O15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_O15 5', mRNA sequence
Length = 526
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 340 tggtggtgtcggagaccggctggccgtcggccggcgg 376
||||||||||||||| ||| ||||||||||| |||||
Sbjct: 73 tggtggtgtcggagagcgggtggccgtcggcgggcgg 109
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 483 ttcgccatgttcaacgagaac 503
|||||||||||||||||||||
Sbjct: 213 ttcgccatgttcaacgagaac 233
>gb|BQ766726.1|BQ766726 EBro08_SQ006_O23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_O23 5', mRNA sequence
Length = 599
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 340 tggtggtgtcggagaccggctggccgtcggccggcgg 376
||||||||||||||| ||| ||||||||||| |||||
Sbjct: 265 tggtggtgtcggagagcgggtggccgtcggcgggcgg 301
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 483 ttcgccatgttcaacgagaac 503
|||||||||||||||||||||
Sbjct: 405 ttcgccatgttcaacgagaac 425
>gb|BQ768478.1|BQ768478 EBro08_SQ011_G22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_G22 5', mRNA sequence
Length = 592
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 340 tggtggtgtcggagaccggctggccgtcggccggcgg 376
||||||||||||||| ||| ||||||||||| |||||
Sbjct: 195 tggtggtgtcggagagcgggtggccgtcggcgggcgg 231
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 483 ttcgccatgttcaacgagaac 503
|||||||||||||||||||||
Sbjct: 335 ttcgccatgttcaacgagaac 355
>gb|CA018533.1|CA018533 HV08O12r HV Hordeum vulgare subsp. vulgare cDNA clone HV08O12
5-PRIME, mRNA sequence
Length = 645
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 393 agctggtggtgtccgagagcgggtggccgtcagccggcggc 433
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 524 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 580
>gb|BJ543926.1|BJ543926 BJ543926 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35e23 5', mRNA sequence
Length = 266
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 20 agctggtggtgtccgagagcgggtggccgtcagccggcggc 60
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | ||| |||||||||||||||||
Sbjct: 151 gagacctacgtcttctccatgttcaacgagaac 183
>gb|BJ545156.1|BJ545156 BJ545156 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45b03 5', mRNA sequence
Length = 554
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 389 agctggtggtgtccgagagcgggtggccgtcagccggcggc 429
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 471 gagacctacctgttcgccatgttcaacgagaac 503
||||||||| | ||| |||||||||||||||||
Sbjct: 520 gagacctacgtcttctccatgttcaacgagaac 552
>gb|BJ545434.1|BJ545434 BJ545434 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35e23 3', mRNA sequence
Length = 494
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 452 agctggtggtgtccgagagcgggtggccgtcagccggcggc 412
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 321 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 265
>gb|BJ546633.1|BJ546633 BJ546633 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45b03 3', mRNA sequence
Length = 730
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 agctggtggtgtcggagaccggctggccgtcggccggcggc 377
||||||||||||| |||| ||| |||||||| |||||||||
Sbjct: 602 agctggtggtgtccgagagcgggtggccgtcagccggcggc 562
Score = 42.1 bits (21), Expect = 0.028
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 471 gagacctacctgttcgccatgttcaacgagaacggcaaggccgagggcgtggagcag 527
||||||||| | ||| ||||||||||||||||| |||| | | ||||||||||||
Sbjct: 471 gagacctacgtcttctccatgttcaacgagaaccagaaggacaacggcgtggagcag 415
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,715
Number of Sequences: 312970
Number of extensions: 139715
Number of successful extensions: 42430
Number of sequences better than 0.5: 185
Number of HSP's better than 0.5 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42079
Number of HSP's gapped (non-prelim): 347
length of query: 807
length of database: 175,134,539
effective HSP length: 19
effective length of query: 788
effective length of database: 169,188,109
effective search space: 133320229892
effective search space used: 133320229892
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)