BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.2
(2231 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan... 1542 0.0
gb|BU999528.1|BU999528 HI14M13r HI Hordeum vulgare subsp. v... 579 e-163
gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. v... 517 e-145
gb|BU996833.1|BU996833 HM14O21r HM Hordeum vulgare subsp. v... 472 e-131
gb|BQ469930.1|BQ469930 HX01E12T HX Hordeum vulgare subsp. v... 468 e-130
gb|AL508845.1|AL508845 AL508845 Hordeum vulgare Barke devel... 464 e-129
gb|CA021252.1|CA021252 HZ39I23r HZ Hordeum vulgare subsp. v... 454 e-126
gb|BM098044.2|BM098044 EBpi03_SQ002_G06_R pistil, 4 DPA, no... 440 e-122
gb|BI955317.1|BI955317 HVSMEm0022I03f Hordeum vulgare green... 418 e-115
gb|BQ462564.1|BQ462564 HI01E18T HI Hordeum vulgare subsp. v... 373 e-101
gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. v... 371 e-101
gb|CA020043.1|CA020043 HV14C18r HV Hordeum vulgare subsp. v... 371 e-101
gb|BQ464740.1|BQ464740 HU01E02T HU Hordeum vulgare subsp. v... 355 4e-096
gb|CA022582.1|CA022582 HZ43L07r HZ Hordeum vulgare subsp. v... 347 1e-093
gb|BQ462668.1|BQ462668 HI01K09T HI Hordeum vulgare subsp. v... 341 6e-092
gb|CA019039.1|CA019039 HV10I20r HV Hordeum vulgare subsp. v... 335 4e-090
gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. v... 333 1e-089
gb|CB882302.1|CB882302 HL01H18w HL Hordeum vulgare subsp. v... 325 4e-087
gb|BM100567.2|BM100567 EBma01_SQ005_J17_R maternal, 4 DPA, ... 274 1e-071
gb|CA026644.1|CA026644 HZ56I06r HZ Hordeum vulgare subsp. v... 264 1e-068
gb|BI951410.1|BI951410 HVSMEl0025N13f Hordeum vulgare spike... 260 2e-067
gb|BI956324.1|BI956324 HVSMEn0002G07f Hordeum vulgare rachi... 250 2e-064
gb|BG418718.1|BG418718 HVSMEk0024C10f Hordeum vulgare testa... 226 2e-057
gb|BU996476.1|BU996476 HM13L18r HM Hordeum vulgare subsp. v... 216 2e-054
gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. v... 202 4e-050
gb|CA023517.1|CA023517 HZ46H20r HZ Hordeum vulgare subsp. v... 194 9e-048
gb|CA019151.1|CA019151 HV10P13r HV Hordeum vulgare subsp. v... 190 1e-046
gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots... 184 8e-045
gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke devel... 184 8e-045
gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedl... 184 8e-045
gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, n... 184 8e-045
gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA li... 184 8e-045
gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA li... 184 8e-045
gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA li... 184 8e-045
gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA li... 184 8e-045
gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA li... 184 8e-045
gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA li... 184 8e-045
gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. v... 184 8e-045
gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. v... 184 8e-045
gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. v... 184 8e-045
gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, ... 184 8e-045
gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no... 184 8e-045
gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. v... 184 8e-045
gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. v... 184 8e-045
gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. v... 184 8e-045
gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. v... 184 8e-045
gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA li... 184 8e-045
gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. v... 184 8e-045
gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydro... 184 8e-045
gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. v... 182 3e-044
gb|BQ660249.1|BQ660249 HI01K09w HI Hordeum vulgare subsp. v... 182 3e-044
gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. v... 182 3e-044
gb|BU985657.1|BU985657 HF08D21r HF Hordeum vulgare subsp. v... 182 3e-044
gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. v... 182 3e-044
gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. v... 178 5e-043
gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. v... 178 5e-043
gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. v... 176 2e-042
gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. v... 176 2e-042
gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no... 176 2e-042
gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. v... 176 2e-042
gb|AL502558.1|AL502558 AL502558 Hordeum vulgare Barke roots... 174 8e-042
gb|CA017215.1|CA017215 HV14C18u HV Hordeum vulgare subsp. v... 174 8e-042
gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachi... 170 1e-040
gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA li... 170 1e-040
gb|BM374115.1|BM374115 EBma03_SQ003_L03_R maternal, 8 DPA, ... 167 2e-039
gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. v... 165 8e-039
gb|AL511981.1|AL511981 AL511981 Hordeum vulgare Barke devel... 163 3e-038
gb|AL501952.1|AL501952 AL501952 Hordeum vulgare Barke roots... 159 5e-037
gb|BU995244.1|BU995244 HM09K13r HM Hordeum vulgare subsp. v... 117 2e-024
gb|AL512140.1|AL512140 AL512140 Hordeum vulgare Barke devel... 113 3e-023
gb|BF265092.2|BF265092 HV_CEa0011D24f Hordeum vulgare seedl... 88 1e-015
gb|CA004037.1|CA004037 HS16F17r HS Hordeum vulgare subsp. v... 88 1e-015
gb|CA004223.1|CA004223 HS16P05r HS Hordeum vulgare subsp. v... 88 1e-015
gb|BQ462620.1|BQ462620 HI01H22T HI Hordeum vulgare subsp. v... 80 4e-013
gb|AL509470.1|AL509470 AL509470 Hordeum vulgare Barke devel... 76 6e-012
gb|AL505489.1|AL505489 AL505489 Hordeum vulgare Barke roots... 72 9e-011
gb|AL507457.1|AL507457 AL507457 Hordeum vulgare Barke devel... 70 3e-010
gb|BF258158.2|BF258158 HVSMEf0014P07f Hordeum vulgare seedl... 70 3e-010
gb|BQ459096.1|BQ459096 HA02F14r HA Hordeum vulgare subsp. v... 70 3e-010
gb|BQ460323.1|BQ460323 HA06J20r HA Hordeum vulgare subsp. v... 70 3e-010
gb|BQ766906.1|BQ766906 EBro08_SQ007_O10_R root, 3 week, dro... 70 3e-010
gb|BU978383.1|BU978383 HA13B04r HA Hordeum vulgare subsp. v... 70 3e-010
gb|BU997026.1|BU997026 HI06K15r HI Hordeum vulgare subsp. v... 70 3e-010
gb|CA007641.1|CA007641 HU08J08r HU Hordeum vulgare subsp. v... 70 3e-010
gb|CA027301.1|CA027301 HZ58I10r HZ Hordeum vulgare subsp. v... 70 3e-010
gb|CK125399.1|CK125399 BES1824107o09 BES1824 Hordeum vulgar... 70 3e-010
gb|BQ468423.1|BQ468423 HM01D10T HM Hordeum vulgare subsp. v... 62 8e-008
gb|CA006690.1|CA006690 HU05G22r HU Hordeum vulgare subsp. v... 62 8e-008
gb|BQ765660.1|BQ765660 EBro03_SQ007_F19_R root, 3 week, wat... 58 1e-006
gb|AL507325.1|AL507325 AL507325 Hordeum vulgare Barke devel... 56 5e-006
gb|BU980298.1|BU980298 HA20E07r HA Hordeum vulgare subsp. v... 56 5e-006
gb|CB858709.1|CB858709 HI08B05w HI Hordeum vulgare subsp. v... 56 5e-006
gb|CX662599.1|CX662599 EST 422 Expressed sequences from Bar... 52 8e-005
gb|CA009386.1|CA009386 HU13P18r HU Hordeum vulgare subsp. v... 48 0.001
gb|CA021153.1|CA021153 HZ39E06r HZ Hordeum vulgare subsp. v... 48 0.001
gb|BE411093.1|BE411093 ISC002.C07F990406 ITEC ISC Barley Le... 46 0.005
gb|AL504655.1|AL504655 AL504655 Hordeum vulgare Barke roots... 46 0.005
gb|BF257182.2|BF257182 HVSMEf0012B20f Hordeum vulgare seedl... 46 0.005
gb|BI947544.1|BI947544 HVSMEl0005N11f Hordeum vulgare spike... 46 0.005
gb|BU977331.1|BU977331 HA11D20r HA Hordeum vulgare subsp. v... 46 0.005
gb|CA032659.1|CA032659 HX13N01r HX Hordeum vulgare subsp. v... 46 0.005
gb|AL503553.1|AL503553 AL503553 Hordeum vulgare Barke roots... 44 0.020
gb|AL509036.1|AL509036 AL509036 Hordeum vulgare Barke devel... 44 0.020
gb|AV833446.1|AV833446 AV833446 K. Sato unpublished cDNA li... 44 0.020
gb|BF255596.2|BF255596 HVSMEf0007E15f Hordeum vulgare seedl... 44 0.020
gb|BI957799.1|BI957799 HVSMEn0011E04f Hordeum vulgare rachi... 44 0.020
gb|BG366042.2|BG366042 HVSMEi0004P02f Hordeum vulgare 20 DA... 44 0.020
gb|BQ458498.1|BQ458498 HA05A21r HA Hordeum vulgare subsp. v... 44 0.020
gb|BQ465777.1|BQ465777 HU04K15r HU Hordeum vulgare subsp. v... 44 0.020
gb|BQ468024.1|BQ468024 HR01L02r HR Hordeum vulgare subsp. v... 44 0.020
gb|BM374213.2|BM374213 EBma03_SQ003_P16_R maternal, 8 DPA, ... 44 0.020
gb|BU976238.1|BU976238 HA03G04r HA Hordeum vulgare subsp. v... 44 0.020
gb|BU977300.1|BU977300 HA11D01r HA Hordeum vulgare subsp. v... 44 0.020
gb|CV053528.1|CV053528 BNEL100c6 Barley EST endosperm libra... 44 0.020
gb|CV054753.1|CV054753 BNEL112h8 Barley EST endosperm libra... 44 0.020
gb|CV054832.1|CV054832 BNEL113g8 Barley EST endosperm libra... 44 0.020
gb|CV056005.1|CV056005 BNEL12H3 Barley EST endosperm librar... 44 0.020
gb|CV056249.1|CV056249 BNEL15F11 Barley EST endosperm libra... 44 0.020
gb|CV056499.1|CV056499 BNEL18D5 Barley EST endosperm librar... 44 0.020
gb|CV057216.1|CV057216 BNEL25c6 Barley EST endosperm librar... 44 0.020
gb|CV057624.1|CV057624 BNEL29h6 Barley EST endosperm librar... 44 0.020
gb|CV058184.1|CV058184 BNEL35c12 Barley EST endosperm libra... 44 0.020
gb|CV061052.1|CV061052 BNEL64d6 Barley EST endosperm librar... 44 0.020
gb|CV061780.1|CV061780 BNEL71h1 Barley EST endosperm librar... 44 0.020
gb|AV833400.1|AV833400 AV833400 K. Sato unpublished cDNA li... 40 0.31
gb|BU995568.1|BU995568 HM10K09r HM Hordeum vulgare subsp. v... 40 0.31
>gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan exohydrolase isoenzyme
ExoI mRNA, complete cds
Length = 2161
Score = 1542 bits (778), Expect = 0.0
Identities = 1530/1780 (85%), Gaps = 3/1780 (0%)
Strand = Plus / Plus
Query: 205 aggacgccagcaaggacgtggaggtccgcgtcagggacctgctggcgcggatgacgctgg 264
||||||||| |||| |||||||| ||||||| ||||| |||| | ||||||||||||
Sbjct: 111 aggacgccaccaagcccgtggaggaccgcgtcgccgacctcctggggaggatgacgctgg 170
Query: 265 ccgagaaggtcggccagatgacgcagatcgagcggatcgtcgcgtcgccgcaggcgctca 324
| |||||| |||| |||||||| |||||||||||| |||| || ||||| | | ||||
Sbjct: 171 cggagaagatcgggcagatgacccagatcgagcggctcgtggccacgccggacgtgctcc 230
Query: 325 gggactactacatcggcagcctgctcagcggcggcggcagcgtgccgcggaagcaggcga 384
||||| ||| ||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 231 gggacaacttcatcggcagcctgctcagcggcggcggcagcgtgccgcgcaaaggggcca 290
Query: 385 cggcggcggagtgggtcgccatggtcagcgacttccagaaggcgtgcctgtccacgcgcc 444
|||| ||||||| | |||||| || |||||||||||| ||| |||||||||| |
Sbjct: 291 cggccaaggagtggcaggacatggtggacggcttccagaaggcctgcatgtccacgcggc 350
Query: 445 tcggcatcccgatgatctacggcatcgacgccgtccacggccacaacaacgtgtacggcg 504
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 351 tcggcatccccatgatctacggcatcgacgccgtccacggccagaacaacgtctacggcg 410
Query: 505 ccaccatcttcccccacaacgtcggcctcggagccaccagggatccaaacctggtgaaga 564
|||| |||||||||||||||||||||||||| |||||| |||| || |||| |||||||
Sbjct: 411 ccactatcttcccccacaacgtcggcctcggcgccacccgggacccgtacctcgtgaaga 470
Query: 565 ggatcggcgccgcgaccgcgcttgaagtgagagccaccggcatccagtacgcgttcgcgc 624
||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 471 ggatcggcgaggccaccgcgctcgaagtcagagccaccggcatccagtacgccttcgcgc 530
Query: 625 catgcattgcggtgtgccgtgatccgaggtggggccggtgctacgagagctacagcgagg 684
| ||||| ||||||||| | |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 531 cttgcatcgcggtgtgcagagatccgagatgggggcggtgctatgagagctacagcgagg 590
Query: 685 accaccgtatcgtgcaggccatgactgagctcatcccgggcctgcagggcgacgtcccgc 744
| | ||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 591 atcgccggatcgtgcagtccatgacggagctcatccccggcctgcagggcgacgtcccca 650
Query: 745 agaacttcaccagcggcatgcccttcgccgccggaaaggacaaggtcgcggcgtgcgcca 804
|| |||||||||||||||||||||||| |||||||||| ||||||| || || ||||| |
Sbjct: 651 aggacttcaccagcggcatgcccttcgtcgccggaaagaacaaggtggctgcatgcgcga 710
Query: 805 agcacttcgtcggcgacggtggcacgcagaacggcatcaacgagaacaacaccatcatcg 864
|||| || || |||||||| |||||| | |||||||||||||||||||||||||||||
Sbjct: 711 agcattttgtgggcgacggcggcacggtggacggcatcaacgagaacaacaccatcatca 770
Query: 865 accggcagggcctgataagcatccacatgccggcctacctggacgcgctccgcaagggct 924
|||| |||||||||| | ||||||||||||||| ||| | |||| | ||||||
Sbjct: 771 accgtgagggcctgatgaacatccacatgccggcgtacaagaacgccatggacaaggggg 830
Query: 925 tctccaccgtcatgatctcctactccagctggaacgggctcaaaatgcacgccaaccaca 984
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 831 tctccaccgtcatgatctcctactccagctggaacggggtcaagatgcacgccaaccaag 890
Query: 985 acctcatcacaggcttcctcaaggacaggctcaacttccagggcttcacaatctcggatt 1044
||||| |||| || | ||||||||||| |||||| ||| |||||||| ||||| || |
Sbjct: 891 acctcgtcaccggatacctcaaggacacgctcaaattcaagggcttcgtgatctcagact 950
Query: 1045 gggagggcatcgacagggtcaccagccctccaggggcgaactactcctactctgtgcagg 1104
|||||||||| |||||| |||||| |||| | || | ||||||||||||| || |||
Sbjct: 951 gggagggcattgacaggatcaccacccctgccggatctgactactcctactcggtcaagg 1010
Query: 1105 cttcgattcttgctggccttgacatgatcatggtgcccaacaactaccaaaacttcatca 1164
|||| |||||||| ||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 1011 cttccattcttgccggccttgacatgatcatggtgccgaacaactaccagcagttcatca 1070
Query: 1165 ccatcctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatcgacgacgccg 1224
||||||||| || || || ||| ||||| | ||||| ||||||||||||||||| ||||
Sbjct: 1071 gcatcctgaccggccatgtcaacggcggcgtcatccccatgagcaggatcgacgatgccg 1130
Query: 1225 tgactcggattctgcgcgtcaagttcaccatgggcctgttcgagaaccccatgccggacc 1284
|||| ||||| ||||| ||||||||||||||||| || |||||||||||| | ||||
Sbjct: 1131 tgacccggatcctgcgggtcaagttcaccatgggtctcttcgagaacccctacgctgacc 1190
Query: 1285 ccagcctcgcggaccagctggggaagcaggagcacagggacctggcgcgggaggcggtgc 1344
| | | || || ||||| || ||||||||||||||||| ||||| ||||||||| |
Sbjct: 1191 ctgccatggccgagcagctaggaaagcaggagcacagggatttggcgagggaggcggcga 1250
Query: 1345 gcaagtcgctggtgctactcaagaacggcaagcc---gggcgacgcgccgctgctgcccc 1401
| |||||||||||||| || |||||||||||| | | |||||||||||| ||||| |
Sbjct: 1251 ggaagtcgctggtgctgctgaagaacggcaagacttcgaccgacgcgccgcttctgccgc 1310
Query: 1402 tgcccaagaaggccgccaggatcctggtcgcagggagccacgccgacaacctggggtacc 1461
||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 1311 tgcccaagaaggcgcccaagatcctggtcgccgggagccacgccgacaacctgggctacc 1370
Query: 1462 agtgcggcgggtggacgatcgagtggcagggcgacacggggcgcaccaccgtcggcacca 1521
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1371 agtgcggcggctggaccatcgagtggcagggcgacacgggccgcaccaccgtgggcacca 1430
Query: 1522 cggtcctggacgccgtgaaggcggccgtggacccgtcgacggaggtggtgttcgcggaga 1581
| ||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 1431 ccatcctggaggcggtgaaggcggccgtggacccgtcgacggtcgtggtgttcgccgaga 1490
Query: 1582 gccccgacgccgagttcgtcaggagcggcggcttctcgtacgcgatcgtggccgtgggcg 1641
||||||||| |||||||||| ||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 1491 accccgacgcggagttcgtcaagagcggcggcttctcctacgccatcgttgccgtgggcg 1550
Query: 1642 agcacccgtacacggagaccaagggcgacagcatgaacctgacgatcccggaccccgggc 1701
|||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||| |
Sbjct: 1551 agcacccgtacacggagaccaagggcgacaacctgaacctgaccatcccggagcccggcc 1610
Query: 1702 cgagcaccgtacagacggtgtgcgccgccgtgcggtgcgtgaccgtgctcatcagcggcc 1761
||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||| |
Sbjct: 1611 tgagcaccgtgcaggcggtgtgcggcggcgtgcggtgcgcgacggtgctcatcagcgggc 1670
Query: 1762 gccccgtggtgatacagccgttcctgggcgccatggacgcggtcgtggcggcctggctgc 1821
| ||||||||| | |||||| | |||| |||| |||||| | |||||||| ||||| |
Sbjct: 1671 ggcccgtggtggtgcagccgctgctggccgcctccgacgcgctggtggcggcgtggctcc 1730
Query: 1822 cggggaccgagggccagggtgtcaccgacgtgctgttcggggactacgggttcacgggga 1881
| || | ||||| ||||| |||||||||| ||||||||| |||| ||||||||| ||||
Sbjct: 1731 ccggctcggaggggcagggagtcaccgacgcgctgttcggcgacttcgggttcaccggga 1790
Query: 1882 agctgccgcggacgtggttcaggtcggtggaccagctgccgatgaactacggcgacgcgc 1941
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 1791 ggctgccgcggacgtggttcaagtcggtggaccagctgccgatgaacgtcggcgacgcgc 1850
Query: 1942 actacgacccgctgttcccgctcgggttcgggctcaccac 1981
||||||||||||| |||| |||||| | ||| ||||||||
Sbjct: 1851 actacgacccgctcttccggctcggatacggcctcaccac 1890
Score = 60.0 bits (30), Expect = 3e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 83 gctcctccgccgccacaggatggcgctgctcacggcgccggcggtggccgcgctgctgct 142
|||||| ||||| ||||||||||||||||||||||| || |||||| ||| ||| ||
Sbjct: 1 gctcctgcgccggcacaggatggcgctgctcacggcccccgcggtgttcgccgcgctcct 60
Query: 143 gctcttctgg 152
||||||||||
Sbjct: 61 gctcttctgg 70
>gb|BU999528.1|BU999528 HI14M13r HI Hordeum vulgare subsp. vulgare cDNA clone HI14M13
5-PRIME, mRNA sequence
Length = 607
Score = 579 bits (292), Expect = e-163
Identities = 496/564 (87%)
Strand = Plus / Plus
Query: 335 catcggcagcctgctcagcggcggcggcagcgtgccgcggaagcaggcgacggcggcgga 394
||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||
Sbjct: 17 catcggcagcctgctcagcggcggcggcagcgtgccgcgcaagggggccacggccaagga 76
Query: 395 gtgggtcgccatggtcagcgacttccagaaggcgtgcctgtccacgcgcctcggcatccc 454
|||| | |||||| || |||||||||||| ||| |||||||||| |||||||||||
Sbjct: 77 gtggcaggacatggtggacggcttccagaaggcctgcatgtccacgcggctcggcatccc 136
Query: 455 gatgatctacggcatcgacgccgtccacggccacaacaacgtgtacggcgccaccatctt 514
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 137 catgatctacggcatcgacgccgtccacggccagaacaacgtctacggcgccactatctt 196
Query: 515 cccccacaacgtcggcctcggagccaccagggatccaaacctggtgaagaggatcggcgc 574
||||||||||||||||||||| |||||| |||| || |||| ||||||||||||||||
Sbjct: 197 cccccacaacgtcggcctcggcgccacccgggacccgtacctcgtgaagaggatcggcga 256
Query: 575 cgcgaccgcgcttgaagtgagagccaccggcatccagtacgcgttcgcgccatgcattgc 634
|| |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 257 ggccaccgcgctcgaagtcagagccaccggcatccagtacgccttcgcgccttgcatcgc 316
Query: 635 ggtgtgccgtgatccgaggtggggccggtgctacgagagctacagcgaggaccaccgtat 694
||||||| | |||||||| ||||| |||||||| ||||||||||||||||| | ||| ||
Sbjct: 317 ggtgtgcagagatccgagatgggggcggtgctatgagagctacagcgaggatcgccggat 376
Query: 695 cgtgcaggccatgactgagctcatcccgggcctgcagggcgacgtcccgcagaacttcac 754
||||||| ||||||| ||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 377 cgtgcagtccatgacggagctcatccccggcctgcagggcgacgtccccaaggacttcac 436
Query: 755 cagcggcatgcccttcgccgccggaaaggacaaggtcgcggcgtgcgccaagcacttcgt 814
||||||||||||||||| |||||||||| ||||||| || || ||||| ||||| || ||
Sbjct: 437 cagcggcatgcccttcgtcgccggaaagaacaaggtggctgcatgcgcgaagcattttgt 496
Query: 815 cggcgacggtggcacgcagaacggcatcaacgagaacaacaccatcatcgaccggcaggg 874
|||||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct: 497 gggcgacggcggcacggtggacggcatcaacgagaacaacaccatcatcaaccgtgaggg 556
Query: 875 cctgataagcatccacatgccggc 898
|||||| | |||||||||||||||
Sbjct: 557 cctgatgaacatccacatgccggc 580
>gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. vulgare cDNA clone HT13L19
5-PRIME, mRNA sequence
Length = 570
Score = 517 bits (261), Expect = e-145
Identities = 441/501 (88%)
Strand = Plus / Plus
Query: 1481 cgagtggcagggcgacacggggcgcaccaccgtcggcaccacggtcctggacgccgtgaa 1540
||||||||||||||||||||| ||||||||||| |||||||| ||||||| || |||||
Sbjct: 1 cgagtggcagggcgacacgggccgcaccaccgtgggcaccaccatcctggaggcggtgaa 60
Query: 1541 ggcggccgtggacccgtcgacggaggtggtgttcgcggagagccccgacgccgagttcgt 1600
||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||
Sbjct: 61 ggcggccgtggacccgtcgacggtcgtggtgttcgccgagaaccccgacgcggagttcgt 120
Query: 1601 caggagcggcggcttctcgtacgcgatcgtggccgtgggcgagcacccgtacacggagac 1660
|| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 121 caagagcggcggcttctcctacgccatcgttgccgtgggcgagcacccgtacacggagac 180
Query: 1661 caagggcgacagcatgaacctgacgatcccggaccccgggccgagcaccgtacagacggt 1720
||||||||||| | |||||||||| |||||||| ||||| | ||||||||| ||| ||||
Sbjct: 181 caagggcgacaacctgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggt 240
Query: 1721 gtgcgccgccgtgcggtgcgtgaccgtgctcatcagcggccgccccgtggtgatacagcc 1780
||||| || ||||||||||| ||| |||||||||||||| || ||||||||| | |||||
Sbjct: 241 gtgcggcggcgtgcggtgcgcgacggtgctcatcagcgggcggcccgtggtggtgcagcc 300
Query: 1781 gttcctgggcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccaggg 1840
| | |||| |||| |||||| | |||||||| ||||| || || | ||||| |||||
Sbjct: 301 gctgctggccgcctccgacgcgctggtggcggcgtggctccccggctcggaggggcaggg 360
Query: 1841 tgtcaccgacgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggtt 1900
|||||||||| ||||||||| |||| ||||||||| |||| ||||||||||||||||||
Sbjct: 361 agtcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggtt 420
Query: 1901 caggtcggtggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttccc 1960
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 421 caagtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccg 480
Query: 1961 gctcgggttcgggctcaccac 1981
|||||| | ||| ||||||||
Sbjct: 481 gctcggatacggcctcaccac 501
>gb|BU996833.1|BU996833 HM14O21r HM Hordeum vulgare subsp. vulgare cDNA clone HM14O21
5-PRIME, mRNA sequence
Length = 532
Score = 472 bits (238), Expect = e-131
Identities = 409/464 (88%), Gaps = 4/464 (0%)
Strand = Plus / Plus
Query: 1299 cagctggggaagcaggagcacagggacctggcgcgggaggcggtgcgcaagtcgctggtg 1358
||||| || ||||||||||||||||| ||||| ||||||||| | | ||||||||||||
Sbjct: 69 cagctaggaaagcaggagcacagggatttggcgagggaggcggcgaggaagtcgctggtg 128
Query: 1359 ctactcaagaacggcaagcc---gggcgacgcgccgctgctgcccctgcccaagaaggcc 1415
|| || |||||||||||| | | |||||||||||| ||||| ||||||||||||||
Sbjct: 129 ctgctgaagaacggcaagacttcgaccgacgcgccgcttctgccgctgcccaagaaggcg 188
Query: 1416 gccaggatcctggtcgcagggagccacgccgacaacctggg-gtaccagtgcggcgggtg 1474
||| |||||||||||| ||||||||||||||||||||||| || |||||||||| ||
Sbjct: 189 cccatgatcctggtcgccgggagccacgccgacaacctgggcgtgggagtgcggcggctg 248
Query: 1475 gacgatcgagtggcagggcgacacggggcgcaccaccgtcggcaccacggtcctggacgc 1534
||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 249 gaccatcgagtggcagggcgacacgggccgcaccaccgtgggcaccaccatcctggaggc 308
Query: 1535 cgtgaaggcggccgtggacccgtcgacggaggtggtgttcgcggagagccccgacgccga 1594
|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||
Sbjct: 309 ggtgaaggcggccgtggacccgtcgacggtcgtggtgttcgccgagaaccccgacgcgga 368
Query: 1595 gttcgtcaggagcggcggcttctcgtacgcgatcgtggccgtgggcgagcacccgtacac 1654
|||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 369 gttcgtcaagagcggcggcttctcctacgccatcgttgccgtgggcgagcacccgtacac 428
Query: 1655 ggagaccaagggcgacagcatgaacctgacgatcccggaccccgggccgagcaccgtaca 1714
||||||||||||||||| | |||||||||| |||||||| ||||| | ||||||||| ||
Sbjct: 429 ggagaccaagggcgacaacctgaacctgaccatcccggagcccggcctgagcaccgtgca 488
Query: 1715 gacggtgtgcgccgccgtgcggtgcgtgaccgtgctcatcagcg 1758
| ||||||||| || ||||||||||| ||| |||||||||||||
Sbjct: 489 ggcggtgtgcggcggcgtgcggtgcgcgacggtgctcatcagcg 532
>gb|BQ469930.1|BQ469930 HX01E12T HX Hordeum vulgare subsp. vulgare cDNA clone HX01E12
5-PRIME, mRNA sequence
Length = 462
Score = 468 bits (236), Expect = e-130
Identities = 368/412 (89%)
Strand = Plus / Plus
Query: 1382 cgacgcgccgctgctgcccctgcccaagaaggccgccaggatcctggtcgcagggagcca 1441
|||||||||||| ||||| |||||||||||||| ||| |||||||||||| ||||||||
Sbjct: 33 cgacgcgccgcttctgccgctgcccaagaaggcgcccaagatcctggtcgccgggagcca 92
Query: 1442 cgccgacaacctggggtaccagtgcggcgggtggacgatcgagtggcagggcgacacggg 1501
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 93 cgccgacaacctgggctaccagtgcggcggctggaccatcgagtggcagggcgacacggg 152
Query: 1502 gcgcaccaccgtcggcaccacggtcctggacgccgtgaaggcggccgtggacccgtcgac 1561
||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 153 ccgcaccaccgtgggcaccaccatcctggaggcggtgaaggcggccgtggacccgtcgac 212
Query: 1562 ggaggtggtgttcgcggagagccccgacgccgagttcgtcaggagcggcggcttctcgta 1621
|| ||||||||||| |||| ||||||||| |||||||||| ||||||||||||||| ||
Sbjct: 213 ggtcgtggtgttcgccgagaaccccgacgcggagttcgtcaagagcggcggcttctccta 272
Query: 1622 cgcgatcgtggccgtgggcgagcacccgtacacggagaccaagggcgacagcatgaacct 1681
||| ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 273 cgccatcgttgccgtgggcgagcacccgtacacggagaccaagggcgacaacctgaacct 332
Query: 1682 gacgatcccggaccccgggccgagcaccgtacagacggtgtgcgccgccgtgcggtgcgt 1741
||| |||||||| ||||| | ||||||||| ||| ||||||||| || |||||||||||
Sbjct: 333 gaccatcccggagcccggcctgagcaccgtgcaggcggtgtgcggcggcgtgcggtgcgc 392
Query: 1742 gaccgtgctcatcagcggccgccccgtggtgatacagccgttcctgggcgcc 1793
||| |||||||||||||| || ||| |||| | |||||||| |||| ||||
Sbjct: 393 gacggtgctcatcagcgggcggtccgaggtggtgcagccgttgctggccgcc 444
>gb|AL508845.1|AL508845 AL508845 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09P15V 5',
mRNA sequence
Length = 700
Score = 464 bits (234), Expect = e-129
Identities = 490/573 (85%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 704 catgactgagctcatcccgggcctgcagggcgacgtcccgcagaacttcaccagcggcat 763
|||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 12 catgacggagctcatccccggcctgcagggcgacgtccccaaggacttcaccagcggcat 71
Query: 764 gcccttcgccgccggaaaggacaaggtcgcggcgtgcgccaagcacttcgtcggcgacgg 823
|||||||| |||||||||| ||||||| || || ||||| ||||| || || ||||||||
Sbjct: 72 gcccttcgtcgccggaaagaacaaggtggctgcatgcgcgaagcattttgtgggcgacgg 131
Query: 824 tggcacgcagaacggcatcaacgagaacaacaccatcatcgaccggcagggcctgataag 883
|||||| | ||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct: 132 cggcacggtggacggcatcaacgagaacaacaccatcatcaaccgtgagggcctgatgaa 191
Query: 884 catccacatgccggcctacctggacgcgctccgcaagggcttctccaccgtcatgatctc 943
||||||||||||||| ||| | |||| | ||||||| |||||||||||||||||||
Sbjct: 192 catccacatgccggcgtacaagaacgccatggacaagggcgtctccaccgtcatgatctc 251
Query: 944 ctactccagctggaacgggctcaaaatgcacgccaaccacaacctcatcacaggcttcct 1003
||||||||||||||||||| |||| |||||||||||||| ||||| |||| || | |||
Sbjct: 252 ctactccagctggaacggggtcaagatgcacgccaaccaagacctcgtcaccggatacct 311
Query: 1004 caaggacaggctcaacttccagggcttcacaatctcggattgggagggcatcgacagggt 1063
|||||||| |||||| ||| |||||||| ||||| || ||||||||||| |||||| |
Sbjct: 312 caaggacacgctcaaattcaagggcttcgtgatctcagactgggagggcattgacaggat 371
Query: 1064 caccagccctccaggggcgaactactcctactctgtgcaggcttcgattcttgctggcct 1123
||||| |||| | || | ||||||||||||| || ||||||| |||||||| |||||
Sbjct: 372 caccacccctgccggatctgactactcctactcggtcaaggcttccattcttgccggcct 431
Query: 1124 tgacatgatcatggtgcccaacaactaccaaaacttcatcaccatcctgacgggtcacgt 1183
|||||||||||||||||| ||||||||||| | ||||||| ||||||||| || || ||
Sbjct: 432 tgacatgatcatggtgccgaacaactaccagcagttcatcagcatcctgaccggccatgt 491
Query: 1184 gaacagcggcc-tgatcccgatgagcaggatcgacgacgccgtgactcggattctgcgc- 1241
||| |||||| | ||||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 492 caacggcggccgtcatccccatgagcaggatcgacgatgccgtgacccggatcctgcgng 551
Query: 1242 gtcaagttcaccatgggcctgttcgagaacccc 1274
||||||||||||||||| || ||||||||||||
Sbjct: 552 gtcaagttcaccatgggtctcttcgagaacccc 584
>gb|CA021252.1|CA021252 HZ39I23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39I23
5-PRIME, mRNA sequence
Length = 424
Score = 454 bits (229), Expect = e-126
Identities = 352/393 (89%)
Strand = Plus / Plus
Query: 416 cttccagaaggcgtgcctgtccacgcgcctcggcatcccgatgatctacggcatcgacgc 475
|||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 29 cttccagaaggcctgcatgtccacgcggctcggcatccccatgatctacggcatcgacgc 88
Query: 476 cgtccacggccacaacaacgtgtacggcgccaccatcttcccccacaacgtcggcctcgg 535
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 89 cgtccacggccagaacaacgtctacggcgccactatcttcccccacaacgtcggcctcgg 148
Query: 536 agccaccagggatccaaacctggtgaagaggatcggcgccgcgaccgcgcttgaagtgag 595
|||||| |||| || |||| |||||||||||||||| || |||||||| ||||| ||
Sbjct: 149 cgccacccgggacccgtacctcgtgaagaggatcggcgaggccaccgcgctcgaagtcag 208
Query: 596 agccaccggcatccagtacgcgttcgcgccatgcattgcggtgtgccgtgatccgaggtg 655
||||||||||||||||||||| |||||||| ||||| ||||||||| | |||||||| ||
Sbjct: 209 agccaccggcatccagtacgccttcgcgccttgcatcgcggtgtgcagagatccgagatg 268
Query: 656 gggccggtgctacgagagctacagcgaggaccaccgtatcgtgcaggccatgactgagct 715
||| |||||||| ||||||||||||||||| | ||| ||||||||| ||||||| |||||
Sbjct: 269 ggggcggtgctatgagagctacagcgaggatcgccggatcgtgcagtccatgacggagct 328
Query: 716 catcccgggcctgcagggcgacgtcccgcagaacttcaccagcggcatgcccttcgccgc 775
|||||| |||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 329 catccccggcctgcagggcgacgtccccaaggacttcaccagcggcatgcccttcgtcgc 388
Query: 776 cggaaaggacaaggtcgcggcgtgcgccaagca 808
||||||| ||||||| || || ||||| |||||
Sbjct: 389 cggaaagaacaaggtggctgcatgcgcgaagca 421
>gb|BM098044.2|BM098044 EBpi03_SQ002_G06_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_G06 5', mRNA sequence
Length = 471
Score = 440 bits (222), Expect = e-122
Identities = 393/447 (87%), Gaps = 5/447 (1%)
Strand = Plus / Plus
Query: 1299 cagctggggaagcaggagcacagggacctggcgcgggaggcggtgcgcaagtcgctggtg 1358
||||| || ||||||||||||||||| ||||| ||||||||| | | ||||||||||||
Sbjct: 23 cagctaggaaagcaggagcacagggatttggcgagggaggcggcgaggaagtcgctggtg 82
Query: 1359 ctactcaagaacggcaagcc---gggcgacgcgccgctgctgcccctgcccaagaaggcc 1415
|| || |||||||||||| | | |||||||||||| ||||| ||||||||||||||
Sbjct: 83 ctgctgaagaacggcaagacttcgaccgacgcgccgcttctgccgctgcccaagaaggcg 142
Query: 1416 gccaggatcctggtc-gca-gggagccacgccgacaacctggggtaccagtgcggcgggt 1473
||| |||||||||| || ||||||||||||||||||||||| |||||||||||||| |
Sbjct: 143 cccaagatcctggtccgcncgggagccacgccgacaacctgggctaccagtgcggcggct 202
Query: 1474 ggacgatcgagtggcagggcgacacggggcgcaccaccgtcggcaccacggtcctggacg 1533
|||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
Sbjct: 203 ggaccatcgagtggcagggcgacacgggccgcaccaccgtgggcaccaccatcctggagg 262
Query: 1534 ccgtgaaggcggccgtggacccgtcgacggaggtggtgttcgcggagagccccgacgccg 1593
| ||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||| |
Sbjct: 263 cggtgaaagcggccgtggacccgtcgacggtcgtggtgttcgccgagaaccccgacgcgg 322
Query: 1594 agttcgtcaggagcggcggcttctcgtacgcgatcgtggccgtgggcgagcacccgtaca 1653
||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 323 agttcgtcaagagcggcggcttctcctacgccatcgttgccgtgggcgagcacccgtaca 382
Query: 1654 cggagaccaagggcgacagcatgaacctgacgatcccggaccccgggccgagcaccgtac 1713
|||||||||||||||||| | |||||||||| |||||||| ||||| | ||||||||| |
Sbjct: 383 cggagaccaagggcgacaacctgaacctgaccatcccggagcccggcctgagcaccgtgc 442
Query: 1714 agacggtgtgcgccgccgtgcggtgcg 1740
| ||||||||| || |||||||||||
Sbjct: 443 aagcggtgtgcggcggcgtgcggtgcg 469
>gb|BI955317.1|BI955317 HVSMEm0022I03f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0022I03f, mRNA sequence
Length = 666
Score = 418 bits (211), Expect = e-115
Identities = 376/431 (87%)
Strand = Plus / Plus
Query: 580 ccgcgcttgaagtgagagccaccggcatccagtacgcgttcgcgccatgcattgcggtgt 639
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 1 ccgcgctcgaagtgagagccaccggcatccagtacgccttcgcgccttgcatcgcggtgt 60
Query: 640 gccgtgatccgaggtggggccggtgctacgagagctacagcgaggaccaccgtatcgtgc 699
|| | |||||||| ||||| |||||||| ||||||||||||||||| | ||| |||||||
Sbjct: 61 gcagagatccgagatgggggcggtgctatgagagctacagcgaggatcgccggatcgtgc 120
Query: 700 aggccatgactgagctcatcccgggcctgcagggcgacgtcccgcagaacttcaccagcg 759
|| ||||||| ||||||||||| |||||||||||||||||||| || |||| |||||||
Sbjct: 121 agtccatgacggagctcatccccggcctgcagggcgacgtccccaaggacttgaccagcg 180
Query: 760 gcatgcccttcgccgccggaaaggacaaggtcgcggcgtgcgccaagcacttcgtcggcg 819
|||||||||||| |||||||||| ||||||| || || ||||| ||||| || || ||||
Sbjct: 181 gcatgcccttcgtcgccggaaagaacaaggtggctgcatgcgcgaagcattttgtgggcg 240
Query: 820 acggtggcacgcagaacggcatcaacgagaacaacaccatcatcgaccggcagggcctga 879
|||| |||||| | ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 241 acggcggcacggtggacggcatcaacgagaacaacaccatcatcaaccgtgagggcctga 300
Query: 880 taagcatccacatgccggcctacctggacgcgctccgcaagggcttctccaccgtcatga 939
| | ||||||||||||||| ||| | |||| | ||||||| |||||||||||||||
Sbjct: 301 tgaacatccacatgccggcgtacaagaacgccatggacaagggcgtctccaccgtcatga 360
Query: 940 tctcctactccagctggaacgggctcaaaatgcacgccaaccacaacctcatcacaggct 999
||||||||||||||||||||||| |||| |||||||||||||| ||||| |||| || |
Sbjct: 361 tctcctactccagctggaacggggtcaagatgcacgccaaccaagacctcgtcaccggat 420
Query: 1000 tcctcaaggac 1010
||||||||||
Sbjct: 421 acctcaaggac 431
>gb|BQ462564.1|BQ462564 HI01E18T HI Hordeum vulgare subsp. vulgare cDNA clone HI01E18
5-PRIME, mRNA sequence
Length = 596
Score = 373 bits (188), Expect = e-101
Identities = 445/530 (83%), Gaps = 3/530 (0%)
Strand = Plus / Plus
Query: 917 caagggcttctccaccgtcatgatctcctactccagctggaacgggctcaaaatgcacgc 976
||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 67 caagggcgtctccaccgtcatgatctcctactccagctggaacggggtcaagatgcacgc 126
Query: 977 caaccacaacctcatcacaggcttcctcaaggacaggctcaacttccagggcttcacaat 1036
|||||| ||||| |||| || | ||||||||||| |||||| ||| |||||||| ||
Sbjct: 127 caaccaagacctcgtcaccggatacctcaaggacacgctcaaattcaagggcttcgtgat 186
Query: 1037 ctcggattgggagggcatcgacagggtcaccagccctccaggggcgaactactcctactc 1096
||| || ||||||||||| |||||| |||||| |||| | || | |||||||||||||
Sbjct: 187 ctcagactgggagggcattgacaggatcaccacccctgccggatctgactactcctactc 246
Query: 1097 tgtgcaggcttcgattcttgctggccttgacatgatcatggtgcccaacaactaccaaaa 1156
|| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 247 ggtcaaggcttccattcttgccggccttgacatgatcatggtgccgaacaactaccagca 306
Query: 1157 cttcatcaccatcctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatcga 1216
||||||| ||||||||| || || || ||| ||||| | ||||| ||||||||||||||
Sbjct: 307 gttcatcagcatcctgaccggccatgtcaacggcggcgtcatccccatgagcaggatcga 366
Query: 1217 cgacgccgtgactcggattctgcgcgtcaagttcaccatgggcctgttcgagaaccccat 1276
||| |||||||| ||||| ||||| ||||||||||||||||| || || |||||||||
Sbjct: 367 cgatgccgtgacccggatcctgcgggtcaagttcaccatgggtctcttagagaaccccta 426
Query: 1277 gccggaccccagcctcgcggaccagctggggaagcaggagcacagggacctggcgcggga 1336
| ||||| | | || || ||||| || ||||||||||||||||| ||||| ||||
Sbjct: 427 cgctgaccctgccatggccgagcagctaggaaagcaggagcacagggatttggcgaggga 486
Query: 1337 ggcggtgcgcaagtcgctggtgctactcaagaacggcaag---ccgggcgacgcgccgct 1393
||||| | | |||||||||||||| || |||||||||||| || ||||||||||||
Sbjct: 487 ggcggcgaggaagtcgctggtgctgctgaagaacggcaagacttcgaccgacgcgccgct 546
Query: 1394 gctgcccctgcccaagaaggccgccaggatcctggtcgcagggagccacg 1443
||||| |||||||||||||| ||| |||||||||||| ||||||||||
Sbjct: 547 tctgccgctgcccaagaaggcgcccaagatcctggtcgccgggagccacg 596
>gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. vulgare cDNA clone HB23O18
5-PRIME, mRNA sequence
Length = 515
Score = 371 bits (187), Expect = e-101
Identities = 331/379 (87%)
Strand = Plus / Plus
Query: 1603 ggagcggcggcttctcgtacgcgatcgtggccgtgggcgagcacccgtacacggagacca 1662
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 10 ggagcggcggcttctcctacgccatcgttgccgtgggcgagcacccgtacacggagacca 69
Query: 1663 agggcgacagcatgaacctgacgatcccggaccccgggccgagcaccgtacagacggtgt 1722
||||||||| | |||||||||| |||||||| ||||| | ||||||||| ||| ||||||
Sbjct: 70 agggcgacaacctgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggtgt 129
Query: 1723 gcgccgccgtgcggtgcgtgaccgtgctcatcagcggccgccccgtggtgatacagccgt 1782
||| || ||||||||||| ||| |||||||||||||| || ||||||||| | ||||||
Sbjct: 130 gcggcggcgtgcggtgcgcgacggtgctcatcagcgggcggcccgtggtggtgcagccgc 189
Query: 1783 tcctgggcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtg 1842
| |||| |||| |||||| | |||||||| ||||| || || | ||||| ||||| |
Sbjct: 190 tgctggccgcctccgacgcgctggtggcggcgtggctccccggctcggaggggcagggag 249
Query: 1843 tcaccgacgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttca 1902
||||||||| ||||||||| |||| ||||||||| |||| ||||||||||||||||||||
Sbjct: 250 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 309
Query: 1903 ggtcggtggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgc 1962
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct: 310 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 369
Query: 1963 tcgggttcgggctcaccac 1981
|||| | ||| ||||||||
Sbjct: 370 tcggatacggcctcaccac 388
>gb|CA020043.1|CA020043 HV14C18r HV Hordeum vulgare subsp. vulgare cDNA clone HV14C18
5-PRIME, mRNA sequence
Length = 542
Score = 371 bits (187), Expect = e-101
Identities = 448/533 (84%), Gaps = 4/533 (0%)
Strand = Plus / Plus
Query: 920 gggcttctccaccgtcatgatctcctactccagctggaacgggctcaaaatgcacgccaa 979
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 10 gggcgtctccaccgtcatgatctcctactccagctggaacggggtcaagatgcacgccaa 69
Query: 980 ccacaacctcatcacaggcttcctcaaggacaggctcaacttccagggcttcacaatctc 1039
||| ||||| |||| || | ||||||||||| |||||| ||| |||||||| |||||
Sbjct: 70 ccaagacctcgtcaccggatacctcaaggacacgctcaaattcaagggcttcgtgatctc 129
Query: 1040 ggattgggagggcatcgacagggtcaccagccctccaggggcgaactactcctactctgt 1099
|| ||||||||||| |||||| |||||| |||| | || | ||||||||||||| ||
Sbjct: 130 agactgggagggcattgacaggatcaccacccctgccggatctgactactcctactcggt 189
Query: 1100 gcaggcttcgattcttgctggccttgacatgatcatggtgcccaacaactaccaaaactt 1159
||||||| |||||||| ||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 190 caaggcttccattcttgccggccttgacatgatcatggtgccgaacaactaccagcagtt 249
Query: 1160 catcaccatcctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatcgacga 1219
||||| ||||||||| || || || ||| ||||| | ||||| |||||||||||||||||
Sbjct: 250 catcagcatcctgaccggccatgtcaacggcggcgtcatccccatgagcaggatcgacga 309
Query: 1220 cgccgtgactcggattctgcgcgtcaagttcaccatgggcctgttcgagaaccccatgcc 1279
|||||||| ||||| ||||| ||||||||||||||||| || |||||||||||| |
Sbjct: 310 tgccgtgacccggatcctgcgggtcaagttcaccatgggtctcttcgagaacccctacgc 369
Query: 1280 ggaccccagcctcgcggaccagctggggaagcaggagcacagggacctggcgcgggaggc 1339
||||| | | || || ||||| || ||||||||||||||||| ||||| |||||||
Sbjct: 370 tgaccctgccatggccgagcagctaggaaagcaggagcacagggatttggcgagggaggc 429
Query: 1340 ggtgcgcaagtcgctggtgctactcaagaacggcaag---ccgggcgacgcgccgctgct 1396
|| | | |||||||||||||| || |||||||||||| || |||||||||||| ||
Sbjct: 430 ggcgaggaagtcgctggtgctgctgaagaacggcaagacttcgaccgacgcgccgcttct 489
Query: 1397 gcccctgcccaagaaggccgccaggatcctgg-tcgcagggagccacgccgac 1448
||| |||||||||||||| ||| |||||||| |||| |||||||||||||||
Sbjct: 490 gccgctgcccaagaaggcgcccaagatcctggntcgccgggagccacgccgac 542
>gb|BQ464740.1|BQ464740 HU01E02T HU Hordeum vulgare subsp. vulgare cDNA clone HU01E02
5-PRIME, mRNA sequence
Length = 563
Score = 355 bits (179), Expect = 4e-096
Identities = 421/501 (84%), Gaps = 3/501 (0%)
Strand = Plus / Plus
Query: 917 caagggcttctccaccgtcatgatctcctactccagctggaacgggctcaaaatgcacgc 976
||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 63 caagggcgtctccaccgtcatgatctcctactccagctggaacggggtcaagatgcacgc 122
Query: 977 caaccacaacctcatcacaggcttcctcaaggacaggctcaacttccagggcttcacaat 1036
|||||| ||||| |||| || | ||||||||||| |||||| ||| |||||||| ||
Sbjct: 123 caaccaagacctcgtcaccggatacctcaaggacacgctcaaattcaagggcttcgtgat 182
Query: 1037 ctcggattgggagggcatcgacagggtcaccagccctccaggggcgaactactcctactc 1096
||| || ||||||||||| |||||| |||||| |||| | || | |||||||||||||
Sbjct: 183 ctcagactgggagggcattgacaggatcaccacccctgccggatctgactactcctactc 242
Query: 1097 tgtgcaggcttcgattcttgctggccttgacatgatcatggtgcccaacaactaccaaaa 1156
|| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 243 ggtcaaggcttccattcttgccggccttgacatgatcatggtgccgaacaactaccagca 302
Query: 1157 cttcatcaccatcctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatcga 1216
||||||| ||||||||| || || || ||| ||||| | ||||| ||||||||||||||
Sbjct: 303 gttcatcagcatcctgaccggccatgtcaacggcggcgtcatccccatgagcaggatcga 362
Query: 1217 cgacgccgtgactcggattctgcgcgtcaagttcaccatgggcctgttcgagaaccccat 1276
||| |||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct: 363 cgatgccgtgacccggatcctgcgggtcaagttcaccatgggtctcttcgagaaccccta 422
Query: 1277 gccggaccccagcctcgcggaccagctggggaagcaggagcacagggacctggcgcggga 1336
| ||||| | | || || ||||| || ||||||||||||||||| ||||| ||||
Sbjct: 423 cgctgaccctgccatggccgagcagctaggaaagcaggagcacagggatttggcgaggga 482
Query: 1337 ggcggtgcgcaagtcgctggtgctactcaagaacggcaag---ccgggcgacgcgccgct 1393
||||| | | |||||||||||||| || |||||||||||| || ||||||||||||
Sbjct: 483 ggcggcgaggaagtcgctggtgctgctgaagaacggcaagacttcgaccgacgcgccgct 542
Query: 1394 gctgcccctgcccaagaaggc 1414
||||| ||||||||||||||
Sbjct: 543 tctgccgctgcccaagaaggc 563
>gb|CA022582.1|CA022582 HZ43L07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43L07
5-PRIME, mRNA sequence
Length = 416
Score = 347 bits (175), Expect = 1e-093
Identities = 291/329 (88%), Gaps = 3/329 (0%)
Strand = Plus / Plus
Query: 1299 cagctggggaagcaggagcacagggacctggcgcgggaggcggtgcgcaagtcgctggtg 1358
||||| || ||||||||||||||||| ||||| ||||||||| | | ||||||||||||
Sbjct: 84 cagctaggaaagcaggagcacagggatttggcgagggaggcggcgaggaagtcgctggtg 143
Query: 1359 ctactcaagaacggcaagcc---gggcgacgcgccgctgctgcccctgcccaagaaggcc 1415
|| || |||||||||||| | | |||||||||||| ||||| ||||||||||||||
Sbjct: 144 ctgctgaagaacggcaagacttcgaccgacgcgccgcttctgccgctgcccaagaaggcg 203
Query: 1416 gccaggatcctggtcgcagggagccacgccgacaacctggggtaccagtgcggcgggtgg 1475
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 204 cccaagatcctggtcgccgggagccacgccgacaacctgggctaccagtgcggcggctgg 263
Query: 1476 acgatcgagtggcagggcgacacggggcgcaccaccgtcggcaccacggtcctggacgcc 1535
|| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 264 accatcgagtggcagggcgacacgggccgcaccaccgtgggcaccaccatcctggaggcg 323
Query: 1536 gtgaaggcggccgtggacccgtcgacggaggtggtgttcgcggagagccccgacgccgag 1595
|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||
Sbjct: 324 gtgaaggcggccgtggacccgtcgacggtcgtggtgttcgccgagaaccccgacgcggag 383
Query: 1596 ttcgtcaggagcggcggcttctcgtacgc 1624
||||||| ||||||||||||||| |||||
Sbjct: 384 ttcgtcaagagcggcggcttctcctacgc 412
>gb|BQ462668.1|BQ462668 HI01K09T HI Hordeum vulgare subsp. vulgare cDNA clone HI01K09
5-PRIME, mRNA sequence
Length = 551
Score = 341 bits (172), Expect = 6e-092
Identities = 433/520 (83%)
Strand = Plus / Plus
Query: 853 acaccatcatcgaccggcagggcctgataagcatccacatgccggcctacctggacgcgc 912
||||||||||| |||| |||||||||| | ||||||||||||||| ||| | ||||
Sbjct: 4 acaccatcatcaaccgtgagggcctgatgaacatccacatgccggcgtacaagaacgcca 63
Query: 913 tccgcaagggcttctccaccgtcatgatctcctactccagctggaacgggctcaaaatgc 972
| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 64 tggacaagggcgtctccaccgtcatgatctcctactccagctggaacggggtcaagatgc 123
Query: 973 acgccaaccacaacctcatcacaggcttcctcaaggacaggctcaacttccagggcttca 1032
|||||||||| ||||| |||| || | ||||||||||| |||||| ||| ||||||||
Sbjct: 124 acgccaaccaagacctcgtcaccggatacctcaaggacacgctcaaattcaagggcttcg 183
Query: 1033 caatctcggattgggagggcatcgacagggtcaccagccctccaggggcgaactactcct 1092
||||| || ||||||||||| |||||| |||||| |||| | || | |||||||||
Sbjct: 184 tgatctcagactgggagggcattgacaggatcaccacccctgccggatctgactactcct 243
Query: 1093 actctgtgcaggcttcgattcttgctggccttgacatgatcatggtgcccaacaactacc 1152
|||| || ||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 244 actcggtcaaggcttccattcttgccggccttgacatgatcatggtgccgaacaactacc 303
Query: 1153 aaaacttcatcaccatcctgacgggtcacgtgaacagcggcctgatcccgatgagcagga 1212
| | ||||||| ||||||||| || || || ||| ||||| | ||||| ||||||||||
Sbjct: 304 agcagttcatcagcatcctgaccggccatgtcaacggcggcgtcatccccatgagcagga 363
Query: 1213 tcgacgacgccgtgactcggattctgcgcgtcaagttcaccatgggcctgttcgagaacc 1272
||||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct: 364 tcgacgatgccgtgacccggatcctgcgggtcaagttcaccatgggtctcttcgagaacc 423
Query: 1273 ccatgccggaccccagcctcgcggaccagctggggaagcaggagcacagggacctggcgc 1332
|| | ||||| | | || || ||||| || ||||||||||||||||| |||||
Sbjct: 424 cctacgctgaccctgccatggccgagcagctaggaaagcaggagcacagggatttggcga 483
Query: 1333 gggaggcggtgcgcaagtcgctggtgctactcaagaacgg 1372
||||||||| | | ||||| |||||||| || ||||||||
Sbjct: 484 gggaggcggcgaggaagtccctggtgctgctgaagaacgg 523
>gb|CA019039.1|CA019039 HV10I20r HV Hordeum vulgare subsp. vulgare cDNA clone HV10I20
5-PRIME, mRNA sequence
Length = 485
Score = 335 bits (169), Expect = 4e-090
Identities = 388/461 (84%)
Strand = Plus / Plus
Query: 809 cttcgtcggcgacggtggcacgcagaacggcatcaacgagaacaacaccatcatcgaccg 868
||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| ||||
Sbjct: 11 cttcgtcggcgacggcggcacggtgaacggcatcaacgaggacaacaccgtcatcaaccg 70
Query: 869 gcagggcctgataagcatccacatgccggcctacctggacgcgctccgcaagggcttctc 928
|||||||||| | ||||||||||||||||||| | ||||| ||| ||||||| ||||
Sbjct: 71 cgagggcctgatgaacatccacatgccggcctacttcgacgctctcgccaagggcgtctc 130
Query: 929 caccgtcatgatctcctactccagctggaacgggctcaaaatgcacgccaaccacaacct 988
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 131 caccgtcatgatctcctactccagctggaacggggtcaaaatgcacgccaacaaagatct 190
Query: 989 catcacaggcttcctcaaggacaggctcaacttccagggcttcacaatctcggattggga 1048
|||| || | |||||| |||| |||||| |||||||||||| ||||| |||||| |
Sbjct: 191 ggtcactggatacctcaaagacacgctcaaattccagggcttcgtgatctcagattggaa 250
Query: 1049 gggcatcgacagggtcaccagccctccaggggcgaactactcctactctgtgcaggcttc 1108
||| || |||| | |||| |||||| |||| || ||||| ||||||||| |||||||
Sbjct: 251 gggtattgacaagatcacgagccctggagggtcggactaccactactctgtcaaggcttc 310
Query: 1109 gattcttgctggccttgacatgatcatggtgcccaacaactaccaaaacttcatcaccat 1168
||||||| ||||||||||||||||||||||| | |||||| | ||||||| |||
Sbjct: 311 tgttcttgccggccttgacatgatcatggtgcctagtaactacacgcagttcatcagcat 370
Query: 1169 cctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatcgacgacgccgtgac 1228
||||| | |||| |||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 371 actgactagctacgtcaacagcggagtagtcccgatgagcaggatcgacgacgccgtcac 430
Query: 1229 tcggattctgcgcgtcaagttcaccatgggcctgttcgaga 1269
||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 431 ccggatcctgcgcgtcaagttcgccatgggcctgttcgaga 471
>gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63J10
5-PRIME, mRNA sequence
Length = 361
Score = 333 bits (168), Expect = 1e-089
Identities = 312/360 (86%)
Strand = Plus / Plus
Query: 1515 ggcaccacggtcctggacgccgtgaaggcggccgtggacccgtcgacggaggtggtgttc 1574
|||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct: 2 ggcaccaccatcctggaggcggtgaaggcggccgtggacccgtcgacggtcgtggtgttc 61
Query: 1575 gcggagagccccgacgccgagttcgtcaggagcggcggcttctcgtacgcgatcgtggcc 1634
|| |||| ||||||||| |||||||||| ||||||||||||||| ||||| ||||| |||
Sbjct: 62 gccgagaaccccgacgcggagttcgtcaagagcggcggcttctcctacgccatcgttgcc 121
Query: 1635 gtgggcgagcacccgtacacggagaccaagggcgacagcatgaacctgacgatcccggac 1694
||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 122 gtgggcgagcacccgtacacggagaccaagggcgacaacctgaacctgaccatcccggag 181
Query: 1695 cccgggccgagcaccgtacagacggtgtgcgccgccgtgcggtgcgtgaccgtgctcatc 1754
||||| | ||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||
Sbjct: 182 cccggcctgagcaccgtgcaggcggtgtgcggcggcgtgcggtgcgcgacggtgctcatc 241
Query: 1755 agcggccgccccgtggtgatacagccgttcctgggcgccatggacgcggtcgtggcggcc 1814
||||| || ||||||||| | |||||| | |||| |||| |||||| | ||||||||
Sbjct: 242 agcgggcggcccgtggtggtgcagccgctgctggccgcctccgacgcgctggtggcggcg 301
Query: 1815 tggctgccggggaccgagggccagggtgtcaccgacgtgctgttcggggactacgggttc 1874
||||| || || | ||||| ||||| |||||||||| ||||||||| |||| |||||||
Sbjct: 302 tggctccccggctcggaggggcagggagtcaccgacgcgctgttcggcgacttcgggttc 361
>gb|CB882302.1|CB882302 HL01H18w HL Hordeum vulgare subsp. vulgare cDNA clone HL01H18
3-PRIME, mRNA sequence
Length = 598
Score = 325 bits (164), Expect = 4e-087
Identities = 332/388 (85%)
Strand = Plus / Plus
Query: 205 aggacgccagcaaggacgtggaggtccgcgtcagggacctgctggcgcggatgacgctgg 264
||||||||| |||| |||||||| ||||||| ||||| |||| | ||||||||||||
Sbjct: 208 aggacgccaccaagcccgtggaggaccgcgtcgccgacctcctggggaggatgacgctgg 267
Query: 265 ccgagaaggtcggccagatgacgcagatcgagcggatcgtcgcgtcgccgcaggcgctca 324
| |||||| |||| |||||||| |||||||||||| |||| || ||||| | | ||||
Sbjct: 268 cggagaagatcgggcagatgacccagatcgagcggctcgtggccacgccggacgtgctcc 327
Query: 325 gggactactacatcggcagcctgctcagcggcggcggcagcgtgccgcggaagcaggcga 384
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct: 328 gggacaacttcatcggcagcctgctcagcggcggcggcagcgtgccgcgcaagggggcca 387
Query: 385 cggcggcggagtgggtcgccatggtcagcgacttccagaaggcgtgcctgtccacgcgcc 444
|||| ||||||| | |||||| || |||||||||||| ||| |||||||||| |
Sbjct: 388 cggccaaggagtggcaggacatggtggacggcttccagaaggcctgcatgtccacgcggc 447
Query: 445 tcggcatcccgatgatctacggcatcgacgccgtccacggccacaacaacgtgtacggcg 504
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 448 tcggcatccccatgatctacggcatcgacgccgtccacggccagaacaacgtctacggcg 507
Query: 505 ccaccatcttcccccacaacgtcggcctcggagccaccagggatccaaacctggtgaaga 564
|||| |||||||||||||||||||||||||| |||||| |||| || |||| |||||||
Sbjct: 508 ccactatcttcccccacaacgtcggcctcggcgccacccgggaaccgtacctcgtgaaga 567
Query: 565 ggatcggcgccgcgaccgcgcttgaagt 592
||||||||| || |||||||| |||||
Sbjct: 568 ggatcggcgaggccaccgcgctcgaagt 595
Score = 87.7 bits (44), Expect = 1e-015
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 57 tttctggtccggaggcgcctcgccccgctcctccgccgccacaggatggcgctgctcacg 116
||||||||| |||||| |||| |||||||||| ||||| |||||||||||||||||||||
Sbjct: 72 tttctggtcaggaggctcctccccccgctcctgcgccggcacaggatggcgctgctcacg 131
Query: 117 gcgccggcggtggccgcgctgctgctgctcttctgg 152
|| || |||||| ||| ||| ||||||||||||
Sbjct: 132 gcccccgcggtgttcgccgcgctcctgctcttctgg 167
>gb|BM100567.2|BM100567 EBma01_SQ005_J17_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_J17 5', mRNA sequence
Length = 275
Score = 274 bits (138), Expect = 1e-071
Identities = 236/268 (88%), Gaps = 3/268 (1%)
Strand = Plus / Plus
Query: 1327 tggcgcgggaggcggtgcgcaagtcgctggtgctactcaagaacggcaagcc---gggcg 1383
||||| ||||||||| | | |||||||||||||| || |||||||||||| | | ||
Sbjct: 7 tggcgagggaggcggcgaggaagtcgctggtgctgctgaagaacggcaagacttcgaccg 66
Query: 1384 acgcgccgctgctgcccctgcccaagaaggccgccaggatcctggtcgcagggagccacg 1443
|||||||||| ||||| |||||||||||||| ||| |||||||||||| ||||||||||
Sbjct: 67 acgcgccgcttctgccgctgcccaagaaggcgcccaagatcctggtcgccgggagccacg 126
Query: 1444 ccgacaacctggggtaccagtgcggcgggtggacgatcgagtggcagggcgacacggggc 1503
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 127 ccgacaacctgggctaccagtgcggcggctggaccatcgagtggcagggcgacacgggcc 186
Query: 1504 gcaccaccgtcggcaccacggtcctggacgccgtgaaggcggccgtggacccgtcgacgg 1563
| |||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 187 gtaccaccgtgggcaccaccatcctggaggcggtgaaggcggccgtggacccgtcgacgg 246
Query: 1564 aggtggtgttcgcggagagccccgacgc 1591
||||||||||| |||| |||||||||
Sbjct: 247 tcgtggtgttcgccgagaaccccgacgc 274
>gb|CA026644.1|CA026644 HZ56I06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56I06
5-PRIME, mRNA sequence
Length = 324
Score = 264 bits (133), Expect = 1e-068
Identities = 228/259 (88%), Gaps = 3/259 (1%)
Strand = Plus / Plus
Query: 1299 cagctggggaagcaggagcacagggacctggcgcgggaggcggtgcgcaagtcgctggtg 1358
||||| || ||||||||||||||||| ||||| ||||||||| | | ||||||||||||
Sbjct: 66 cagctaggaaagcaggagcacagggatttggcgagggaggcggcgaggaagtcgctggtg 125
Query: 1359 ctactcaagaacggcaagcc---gggcgacgcgccgctgctgcccctgcccaagaaggcc 1415
|| || |||||||||||| | | |||||||||||| ||||| ||||||||||||||
Sbjct: 126 ctgctgaagaacggcaagacttcgaccgacgcgccgcttctgccgctgcccaagaaggcg 185
Query: 1416 gccaggatcctggtcgcagggagccacgccgacaacctggggtaccagtgcggcgggtgg 1475
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 186 cccaagatcctggtcgccgggagccacgccgacaacctgggctaccagtgcggcggctgg 245
Query: 1476 acgatcgagtggcagggcgacacggggcgcaccaccgtcggcaccacggtcctggacgcc 1535
|| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 246 accatcgagtggcagggcgacacgggccgcaccaccgtgggcaccaccatcctggaggcg 305
Query: 1536 gtgaaggcggccgtggacc 1554
|||||||||||||||||||
Sbjct: 306 gtgaaggcggccgtggacc 324
>gb|BI951410.1|BI951410 HVSMEl0025N13f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0025N13f, mRNA sequence
Length = 581
Score = 260 bits (131), Expect = 2e-067
Identities = 295/349 (84%), Gaps = 3/349 (0%)
Strand = Plus / Plus
Query: 1210 ggatcgacgacgccgtgactcggattctgcgcgtcaagttcaccatgggcctgttcgaga 1269
|||||||||| |||||||| ||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 1 ggatcgacgatgccgtgacccggatcctgcgggtcaagttcaccatgggtctcttcgaga 60
Query: 1270 accccatgccggaccccagcctcgcggaccagctggggaagcaggagcacagggacctgg 1329
||||| | ||||| | | || || ||||| || ||||||||||||||||| |||
Sbjct: 61 acccctacgctgaccctgccatggccgagcagctaggaaagcaggagcacagggatttgg 120
Query: 1330 cgcgggaggcggtgcgcaagtcgctggtgctactcaagaacggcaagcc---gggcgacg 1386
|| ||||||||| | | |||||||||||||| || |||||||||||| | | |||||
Sbjct: 121 cgagggaggcggcgaggaagtcgctggtgctgctgaagaacggcaagacttcgaccgacg 180
Query: 1387 cgccgctgctgcccctgcccaagaaggccgccaggatcctggtcgcagggagccacgccg 1446
||||||| ||||| |||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct: 181 cgccgcttctgccgctgcccaagaaggcgcccaagatcctggtcgccgggagccacgccg 240
Query: 1447 acaacctggggtaccagtgcggcgggtggacgatcgagtggcagggcgacacggggcgca 1506
|||||||||| |||||||||||||| ||||| |||||||||||||||||||| || || |
Sbjct: 241 acaacctgggctaccagtgcggcggctggaccatcgagtggcagggcgacactggccgga 300
Query: 1507 ccaccgtcggcaccacggtcctggacgccgtgaaggcggccgtggaccc 1555
||||||| |||||||| | |||| || |||||||| |||||||||||
Sbjct: 301 ccaccgtgggcaccaccatattggaggcggtgaaggcagccgtggaccc 349
>gb|BI956324.1|BI956324 HVSMEn0002G07f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0002G07f,
mRNA sequence
Length = 440
Score = 250 bits (126), Expect = 2e-064
Identities = 291/346 (84%)
Strand = Plus / Plus
Query: 929 caccgtcatgatctcctactccagctggaacgggctcaaaatgcacgccaaccacaacct 988
|||||||| || ||||||| ||||||||||||| |||| |||||||||||||| |||||
Sbjct: 31 caccgtcaggaggtcctactgcagctggaacggggtcaacatgcacgccaaccaaaacct 90
Query: 989 catcacaggcttcctcaaggacaggctcaacttccagggcttcacaatctcggattggga 1048
| |||| || | ||||||||||| |||||| ||| |||||||| ||||| || |||||
Sbjct: 91 cgtcaccggatacctcaaggacacgctcaaattcaagggcttcttgatctcagactggga 150
Query: 1049 gggcatcgacagggtcaccagccctccaggggcgaactactcctactctgtgcaggcttc 1108
||||| |||||| |||||| |||| | || | ||||||||||||| || | |||||
Sbjct: 151 cggcattgacaggatcaccacccctgccggatctgactactcctactcggtcaaagcttc 210
Query: 1109 gattcttgctggccttgacatgatcatggtgcccaacaactaccaaaacttcatcaccat 1168
|||||||| ||||||||||||||||||||||| ||||||||||| | ||||||| |||
Sbjct: 211 cattcttgccggccttgacatgatcatggtgccgaacaactaccagcagttcatcagcat 270
Query: 1169 cctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatcgacgacgccgtgac 1228
|||||| || || || ||| ||||| | ||||| ||||||||||||||||| ||||||||
Sbjct: 271 cctgaccgggcatgtcaacggcggcgtcatccccatgagcaggatcgacgatgccgtgac 330
Query: 1229 tcggattctgcgcgtcaagttcaccatgggcctgttcgagaacccc 1274
||||| ||||| ||||||||||||||||| || ||| ||||||||
Sbjct: 331 ccggatcctgcgggtcaagttcaccatgggtctcttcaagaacccc 376
>gb|BG418718.1|BG418718 HVSMEk0024C10f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0024C10f, mRNA sequence
Length = 849
Score = 226 bits (114), Expect = 2e-057
Identities = 261/310 (84%)
Strand = Plus / Plus
Query: 917 caagggcttctccaccgtcatgatctcctactccagctggaacgggctcaaaatgcacgc 976
||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 13 caagggcgtctccaccgtcatgatctcctactccagctggaacggggtcaagatgcacgc 72
Query: 977 caaccacaacctcatcacaggcttcctcaaggacaggctcaacttccagggcttcacaat 1036
|||||| ||||| |||| || | ||||||||||| |||||| ||| |||||||| ||
Sbjct: 73 caaccaagacctcgtcaccggatacctcaaggacacgctcaaattcaagggcttcgtgat 132
Query: 1037 ctcggattgggagggcatcgacagggtcaccagccctccaggggcgaactactcctactc 1096
||| || ||||||||||| |||||| |||||| |||| | || | |||||||||||||
Sbjct: 133 ctcagactgggagggcattgacaggatcaccacccctgccggatctgactactcctactc 192
Query: 1097 tgtgcaggcttcgattcttgctggccttgacatgatcatggtgcccaacaactaccaaaa 1156
| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 193 ggacaaggcttccattcttgccggccttgacatgatcatggtgccgaacaactaccagca 252
Query: 1157 cttcatcaccatcctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatcga 1216
| |||| ||||||||| || || || ||| |||| | ||||| ||||||||||||||
Sbjct: 253 ggtgatcagcatcctgaccggccatgtcaacggcggagttatccccatgagcaggatcga 312
Query: 1217 cgacgccgtg 1226
||| ||||||
Sbjct: 313 cgatgccgtg 322
>gb|BU996476.1|BU996476 HM13L18r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L18
5-PRIME, mRNA sequence
Length = 286
Score = 216 bits (109), Expect = 2e-054
Identities = 198/227 (87%), Gaps = 3/227 (1%)
Strand = Plus / Plus
Query: 1299 cagctggggaagcaggagcacagggacctggcgcgggaggcggtgcgcaagtcgctggtg 1358
||||| || ||||||||||||||||| ||||| ||||||||| | | ||||||||||||
Sbjct: 48 cagctaggaaagcaggagcacagggatttggcgagggaggcggcgaggaagtcgctggtg 107
Query: 1359 ctactcaagaacggcaagcc---gggcgacgcgccgctgctgcccctgcccaagaaggcc 1415
|| || |||||||||||| | | |||||||||||| ||||| ||||||||||||||
Sbjct: 108 ctgctgaagaacggcaagacttcgaccgacgcgccgcttctgccgctgcccaagaaggcg 167
Query: 1416 gccaggatcctggtcgcagggagccacgccgacaacctggggtaccagtgcggcgggtgg 1475
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 168 cccaagatcctggtcgccgggagccacgccgacaacctgggctaccagtgcggcggctgg 227
Query: 1476 acgatcgagtggcagggcgacacggggcgcaccaccgtcggcaccac 1522
|| ||||||||||||||||||||||| || ||||||| ||||||||
Sbjct: 228 accatcgagtggcagggcgacacgggccgtaccaccgcgggcaccac 274
>gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. vulgare cDNA clone HV10I20
3-PRIME, mRNA sequence
Length = 472
Score = 202 bits (102), Expect = 4e-050
Identities = 165/186 (88%)
Strand = Plus / Minus
Query: 1796 ggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccgacgtgct 1855
||||||| | |||||||| ||||| || || | ||||| ||||| ||||||||| |||
Sbjct: 466 ggacgcgctggtggcggcgtggctccccggctcggaggggcagggcatcaccgacgcgct 407
Query: 1856 gttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcggtggacca 1915
|||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 406 gttcggcgactacgggttcaccgggaagctgccgcggacgtggttcaagtcggtggacca 347
Query: 1916 gctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggttcgggct 1975
||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 346 gctgccgatgaacgtcggcgacgcgcactacgacccgctcttcccgctcggatacggcct 287
Query: 1976 caccac 1981
||||||
Sbjct: 286 caccac 281
>gb|CA023517.1|CA023517 HZ46H20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H20
5-PRIME, mRNA sequence
Length = 350
Score = 194 bits (98), Expect = 9e-048
Identities = 204/240 (85%)
Strand = Plus / Plus
Query: 1035 atctcggattgggagggcatcgacagggtcaccagccctccaggggcgaactactcctac 1094
||||| || ||||||||||| |||||| |||||| |||| | || | |||||||||||
Sbjct: 62 atctcagactgggagggcattgacaggatcaccacccctgccggatctgactactcctac 121
Query: 1095 tctgtgcaggcttcgattcttgctggccttgacatgatcatggtgcccaacaactaccaa 1154
|| || ||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 122 tcggtcaaggcttccattcttgccggccttgacatgatcatggtgccgaacaactaccag 181
Query: 1155 aacttcatcaccatcctgacgggtcacgtgaacagcggcctgatcccgatgagcaggatc 1214
| ||||||| ||||||||| || || || ||| ||||| | ||||| ||||||||||||
Sbjct: 182 cagttcatcagcatcctgaccggccatgtcaacggcggcgtcatccccatgagcaggatc 241
Query: 1215 gacgacgccgtgactcggattctgcgcgtcaagttcaccatgggcctgttcgagaacccc 1274
||||| |||||||| ||||| ||||| ||||||||||||||||| || || |||||||||
Sbjct: 242 gacgatgccgtgacccggatcctgcgggtcaagttcaccatgggtctnttngagaacccc 301
>gb|CA019151.1|CA019151 HV10P13r HV Hordeum vulgare subsp. vulgare cDNA clone HV10P13
5-PRIME, mRNA sequence
Length = 177
Score = 190 bits (96), Expect = 1e-046
Identities = 144/160 (90%)
Strand = Plus / Plus
Query: 1382 cgacgcgccgctgctgcccctgcccaagaaggccgccaggatcctggtcgcagggagcca 1441
|||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 18 cgacgcgccgcttctgccgctgcccaagaaggcgcccaatatcctggtcgccgggagcca 77
Query: 1442 cgccgacaacctggggtaccagtgcggcgggtggacgatcgagtggcagggcgacacggg 1501
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 78 cgccgacaacctgggctaccagtgcggcggctggaccatcgagtggcagggcgacacggg 137
Query: 1502 gcgcaccaccgtcggcaccacggtcctggacgccgtgaag 1541
||||||||||| |||||||| ||||||| || ||||||
Sbjct: 138 ccgcaccaccgtgggcaccaccatcctggaggcggtgaag 177
>gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08K03u 3', mRNA sequence
Length = 552
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 402 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 343
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 342 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 283
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 282 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 223
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 222 tcggcctcaccac 210
>gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05L24u 3',
mRNA sequence
Length = 496
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 421 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 362
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 361 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 302
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 301 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 242
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 241 tcggcctcaccac 229
>gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0004G19f, mRNA sequence
Length = 636
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Plus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 286 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 345
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 346 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 405
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 406 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 465
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 466 tcggcctcaccac 478
>gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_J19 5', mRNA sequence
Length = 370
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Plus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 41 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 100
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 101 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 160
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 161 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 220
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 221 tcggcctcaccac 233
>gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak12b24 5', mRNA sequence
Length = 655
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Plus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 317 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 376
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 377 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 436
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 437 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 496
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 497 tcggcctcaccac 509
>gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak12b24 3', mRNA sequence
Length = 609
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 318 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 259
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 258 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 199
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 198 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 139
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 138 tcggcctcaccac 126
>gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 3', mRNA sequence
Length = 663
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 287 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 228
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 227 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 168
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 167 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 108
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 107 tcggcctcaccac 95
>gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k08 3', mRNA sequence
Length = 696
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 315 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 256
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 255 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 196
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 195 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 136
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 135 tcggcctcaccac 123
>gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9e08 3', mRNA sequence
Length = 682
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 315 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 256
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 255 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 196
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 195 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 136
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 135 tcggcctcaccac 123
>gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd24f16 3', mRNA sequence
Length = 599
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 280 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 221
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 220 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 161
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 160 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 101
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 100 tcggcctcaccac 88
>gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. vulgare cDNA clone HA06J20
3-PRIME, mRNA sequence
Length = 454
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 324 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 265
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 264 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 205
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 204 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 145
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 144 tcggcctcaccac 132
>gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. vulgare cDNA clone HR01L02
3-PRIME, mRNA sequence
Length = 457
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 329 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 270
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 269 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 210
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 209 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 150
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 149 tcggcctcaccac 137
>gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. vulgare cDNA clone HU04K15
3-PRIME, mRNA sequence
Length = 582
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 329 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 270
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 269 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 210
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 209 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 150
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 149 tcggcctcaccac 137
>gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_F17 5', mRNA sequence
Length = 533
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Plus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 195 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 254
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 255 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 314
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 315 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 374
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 375 tcggcctcaccac 387
>gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_P14 5', mRNA sequence
Length = 411
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Plus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 61 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 120
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 121 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 180
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 181 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 240
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 241 tcggcctcaccac 253
>gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. vulgare cDNA clone HA11D20
3-PRIME, mRNA sequence
Length = 439
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 329 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 270
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 269 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 210
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 209 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 150
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 149 tcggcctcaccac 137
>gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O13
5-PRIME, mRNA sequence
Length = 447
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Plus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 166 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 225
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 226 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 285
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 286 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 345
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 346 tcggcctcaccac 358
>gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. vulgare cDNA clone HI08B05
5-PRIME, mRNA sequence
Length = 594
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 353 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 294
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 293 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 234
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 233 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 174
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 173 tcggcctcaccac 161
>gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. vulgare cDNA clone HS16P05
3-PRIME, mRNA sequence
Length = 446
Score = 184 bits (93), Expect = 8e-045
Identities = 162/185 (87%)
Strand = Plus / Minus
Query: 1797 gacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccgacgtgctg 1856
|||||| | |||||||| ||||| || || | ||||| ||||| |||||||||| ||||
Sbjct: 431 gacgcgctggtggcggcgtggctccccggctcggaggggcagggagtcaccgacgcgctg 372
Query: 1857 ttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcggtggaccag 1916
||||| |||| ||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct: 371 ttcggcgacttcgggttcaccgggaggctgccgcggacgtggttcaagtcggtggaccag 312
Query: 1917 ctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggttcgggctc 1976
|||||||||||| |||||||||||||||||||||||| |||| |||||| | ||| |||
Sbjct: 311 ctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggctcggatacggcctc 252
Query: 1977 accac 1981
|||||
Sbjct: 251 accac 247
>gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26e21 3', mRNA sequence
Length = 522
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 309 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 250
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 249 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 190
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 189 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 130
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 129 tcggcctcaccac 117
>gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. vulgare cDNA clone HI06K15
3-PRIME, mRNA sequence
Length = 542
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Minus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 329 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 270
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 269 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 210
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 209 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 150
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 149 tcggcctcaccac 137
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA,
complete cds
Length = 2105
Score = 184 bits (93), Expect = 8e-045
Identities = 168/193 (87%)
Strand = Plus / Plus
Query: 1789 gcgccatggacgcggtcgtggcggcctggctgccggggaccgagggccagggtgtcaccg 1848
|||||||||||||| |||| || || |||||||| || | ||||||||||| || |||
Sbjct: 1692 gcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccg 1751
Query: 1849 acgtgctgttcggggactacgggttcacggggaagctgccgcggacgtggttcaggtcgg 1908
||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 1752 acgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcgg 1811
Query: 1909 tggaccagctgccgatgaactacggcgacgcgcactacgacccgctgttcccgctcgggt 1968
||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||
Sbjct: 1812 cggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggt 1871
Query: 1969 tcgggctcaccac 1981
|||| ||||||||
Sbjct: 1872 tcggcctcaccac 1884
Score = 69.9 bits (35), Expect = 3e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 441 cgcctcggcatcccgatgatctacggcatcgacgccgtccacggccacaacaacgtgtac 500
||||| ||||| |||||||||||||| || || || || ||||| |||||||||||||||
Sbjct: 344 cgcctaggcattccgatgatctacggtattgatgctgtgcacggtcacaacaacgtgtac 403
Query: 501 ggcgccaccatcttcccccacaacgtcggcctcggagccaccaggga 547
|| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 404 aaagctaccatcttcccacataatgttggcctcggtgctaccaggga 450
Score = 46.1 bits (23), Expect = 0.005
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 1407 aagaaggccgccaggatcctggtcgcagggagccacgccgacaacctggggtaccagtgc 1466
|||||||||| | |||||| ||||| || |||||||||||| || |||| ||||||||
Sbjct: 1307 aagaaggccggtaagatcctcgtcgctggaagccacgccgacgacttgggcaaccagtgc 1366
Query: 1467 ggcgggtggac 1477
|| || |||||
Sbjct: 1367 ggaggatggac 1377
Score = 44.1 bits (22), Expect = 0.020
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 925 tctccaccgtcatgatctcctactccagctggaacgggctcaaaatgcacgccaacca 982
||||||| || |||| ||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 825 tctccactgttatgacctcgtactctagctggaacggcaagaaaatgcacgccaacca 882
>gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. vulgare cDNA clone HI01E18
3-PRIME, mRNA sequence
Length = 423
Score = 182 bits (92), Expect = 3e-044
Identities = 137/152 (90%)
Strand = Plus / Minus
Query: 1830 gagggccagggtgtcaccgacgtgctgttcggggactacgggttcacggggaagctgccg 1889
||||| ||||| |||||||||| ||||||||| |||| ||||||||| |||| |||||||
Sbjct: 398 gaggggcagggagtcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccg 339
Query: 1890 cggacgtggttcaggtcggtggaccagctgccgatgaactacggcgacgcgcactacgac 1949
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 338 cggacgtggttcaagtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgac 279
Query: 1950 ccgctgttcccgctcgggttcgggctcaccac 1981
||||| |||| |||||| | ||| ||||||||
Sbjct: 278 ccgctcttccggctcggatacggcctcaccac 247
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 402,700
Number of Sequences: 312970
Number of extensions: 402700
Number of successful extensions: 124446
Number of sequences better than 0.5: 126
Number of HSP's better than 0.5 without gapping: 115
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 124062
Number of HSP's gapped (non-prelim): 357
length of query: 2231
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2211
effective length of database: 168,875,139
effective search space: 373382932329
effective search space used: 373382932329
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)