BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2169937.2.1
(891 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ766726.1|BQ766726 EBro08_SQ006_O23_R root, 3 week, dro... 151 5e-035
gb|BQ768478.1|BQ768478 EBro08_SQ011_G22_R root, 3 week, dro... 151 5e-035
gb|M96939.1|BLYGLCNHV Hordeum vulgare glucan endo-1,3-beta-... 151 5e-035
gb|CB876783.1|CB876783 HP02G13T HP Hordeum vulgare subsp. v... 131 4e-029
gb|CB877331.1|CB877331 HP04H07T HP Hordeum vulgare subsp. v... 131 4e-029
gb|CB878498.1|CB878498 HP08L24T HP Hordeum vulgare subsp. v... 131 4e-029
gb|CB879474.1|CB879474 HP02G13w HP Hordeum vulgare subsp. v... 131 4e-029
gb|CB879505.1|CB879505 HP02I04w HP Hordeum vulgare subsp. v... 131 4e-029
gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-... 131 4e-029
gb|BF260325.2|BF260325 HVSMEf0021L05f Hordeum vulgare seedl... 123 1e-026
gb|BF263831.2|BF263831 HV_CEa0007M17f Hordeum vulgare seedl... 123 1e-026
gb|AF515785.1| Hordeum vulgare subsp. vulgare beta-1,3-gluc... 119 2e-025
gb|AF479647.2| Hordeum vulgare subsp. vulgare beta-1,3-gluc... 119 2e-025
gb|BF258041.2|BF258041 HVSMEf0014J07f Hordeum vulgare seedl... 115 3e-024
gb|BE601595.2|BE601595 HVSMEh0098M24f Hordeum vulgare 5-45 ... 115 3e-024
emb|AJ271367.1|HVU271367 Hordeum vulgare mRNA for beta-1,3-... 115 3e-024
gb|BI957130.1|BI957130 HVSMEn0007K04f Hordeum vulgare rachi... 101 4e-020
gb|AL510583.1|AL510583 AL510583 Hordeum vulgare Barke devel... 98 6e-019
gb|BF256955.3|BF256955 HVSMEf0011H13f Hordeum vulgare seedl... 98 6e-019
gb|BU980481.1|BU980481 HA20M14r HA Hordeum vulgare subsp. v... 98 6e-019
gb|BU981210.1|BU981210 HA22P03r HA Hordeum vulgare subsp. v... 98 6e-019
gb|BU981251.1|BU981251 HA23B03r HA Hordeum vulgare subsp. v... 98 6e-019
gb|BQ766640.1|BQ766640 EBro08_SQ006_O15_R root, 3 week, dro... 92 4e-017
gb|BJ455256.1|BJ455256 BJ455256 K. Sato unpublished cDNA li... 88 6e-016
gb|AL509694.1|AL509694 AL509694 Hordeum vulgare Barke devel... 84 9e-015
gb|BJ447497.1|BJ447497 BJ447497 K. Sato unpublished cDNA li... 82 4e-014
gb|AV911030.1|AV911030 AV911030 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ449523.1|BJ449523 BJ449523 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ452679.1|BJ452679 BJ452679 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ452749.1|BJ452749 BJ452749 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ456958.1|BJ456958 BJ456958 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ458099.1|BJ458099 BJ458099 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ460231.1|BJ460231 BJ460231 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ460297.1|BJ460297 BJ460297 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ461506.1|BJ461506 BJ461506 K. Sato unpublished cDNA li... 80 1e-013
gb|AV909148.1|AV909148 AV909148 K. Sato unpublished cDNA li... 78 6e-013
gb|BM443712.1|BM443712 EBem09_SQ001_E03_R embryo, 1 Day ger... 72 3e-011
gb|BI954588.1|BI954588 HVSMEm0018L20f Hordeum vulgare green... 70 1e-010
gb|BJ450923.1|BJ450923 BJ450923 K. Sato unpublished cDNA li... 70 1e-010
gb|BJ454422.1|BJ454422 BJ454422 K. Sato unpublished cDNA li... 70 1e-010
gb|BJ462228.1|BJ462228 BJ462228 K. Sato unpublished cDNA li... 70 1e-010
gb|AY239039.1| Hordeum vulgare subsp. vulgare clone SMEm002... 70 1e-010
gb|CD663219.1|CD663219 UCRHV18_04da12_b1 Drought-stressed D... 68 5e-010
gb|AY239038.1| Hordeum vulgare subsp. vulgare clone CEa0006... 68 5e-010
gb|BF064576.1|BF064576 HV_CEb0015P01f Hordeum vulgare seedl... 66 2e-009
gb|BQ764120.1|BQ764120 EBro03_SQ006_G12_R root, 3 week, wat... 66 2e-009
gb|CA023386.1|CA023386 HZ46B06r HZ Hordeum vulgare subsp. v... 66 2e-009
gb|BE420625.1|BE420625 HWM000.H02 ITEC HWM Barley Leaf Libr... 64 8e-009
gb|BE421248.1|BE421248 HWM007.D01 ITEC HWM Barley Leaf Libr... 64 8e-009
gb|BE421306.1|BE421306 HWM007.H11 ITEC HWM Barley Leaf Libr... 64 8e-009
gb|BE421550.1|BE421550 HWM010.E03 ITEC HWM Barley Leaf Libr... 64 8e-009
gb|BG310053.1|BG310053 HVSMEc0016D10f Hordeum vulgare seedl... 64 8e-009
gb|BF254405.2|BF254405 HVSMEf0003O17f Hordeum vulgare seedl... 64 8e-009
gb|BI950007.1|BI950007 HVSMEl0017K20f Hordeum vulgare spike... 64 8e-009
gb|BI950008.1|BI950008 HVSMEl0017K22f Hordeum vulgare spike... 64 8e-009
gb|BI950595.1|BI950595 HVSMEl0021J13f Hordeum vulgare spike... 64 8e-009
gb|BF264980.2|BF264980 HV_CEa0010O18f Hordeum vulgare seedl... 64 8e-009
gb|BG415255.2|BG415255 HVSMEk0005L24f Hordeum vulgare testa... 64 8e-009
gb|BE215234.3|BE215234 HV_CEb0006D20f Hordeum vulgare seedl... 64 8e-009
gb|AV923570.1|AV923570 AV923570 K. Sato unpublished cDNA li... 64 8e-009
gb|AV925542.1|AV925542 AV925542 K. Sato unpublished cDNA li... 64 8e-009
gb|AV926710.1|AV926710 AV926710 K. Sato unpublished cDNA li... 64 8e-009
gb|AV927218.1|AV927218 AV927218 K. Sato unpublished cDNA li... 64 8e-009
gb|AV927361.1|AV927361 AV927361 K. Sato unpublished cDNA li... 64 8e-009
gb|AV928013.1|AV928013 AV928013 K. Sato unpublished cDNA li... 64 8e-009
gb|AV928246.1|AV928246 AV928246 K. Sato unpublished cDNA li... 64 8e-009
gb|AV928494.1|AV928494 AV928494 K. Sato unpublished cDNA li... 64 8e-009
gb|AV928558.1|AV928558 AV928558 K. Sato unpublished cDNA li... 64 8e-009
gb|AV929134.1|AV929134 AV929134 K. Sato unpublished cDNA li... 64 8e-009
gb|AV930079.1|AV930079 AV930079 K. Sato unpublished cDNA li... 64 8e-009
gb|AV930490.1|AV930490 AV930490 K. Sato unpublished cDNA li... 64 8e-009
gb|AV931924.1|AV931924 AV931924 K. Sato unpublished cDNA li... 64 8e-009
gb|BQ464233.1|BQ464233 HF01L09T HF Hordeum vulgare subsp. v... 64 8e-009
gb|BQ465340.1|BQ465340 HU03F15r HU Hordeum vulgare subsp. v... 64 8e-009
gb|BQ468175.1|BQ468175 HP01E06T HP Hordeum vulgare subsp. v... 64 8e-009
gb|BQ659785.1|BQ659785 HF01L09w HF Hordeum vulgare subsp. v... 64 8e-009
gb|BQ661780.1|BQ661780 HP01E06w HP Hordeum vulgare subsp. v... 64 8e-009
gb|BQ661884.1|BQ661884 HP01K19w HP Hordeum vulgare subsp. v... 64 8e-009
gb|BQ663609.1|BQ663609 HU03F15u HU Hordeum vulgare subsp. v... 64 8e-009
gb|BQ664073.1|BQ664073 HV01J14w HV Hordeum vulgare subsp. v... 64 8e-009
gb|BQ664638.1|BQ664638 HV04D23u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CA016370.1|CA016370 HV09A23u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CA016459.1|CA016459 HV08O12u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CA017203.1|CA017203 HV14G01u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CA017223.1|CA017223 HV14D06u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CA018533.1|CA018533 HV08O12r HV Hordeum vulgare subsp. v... 64 8e-009
gb|BJ543926.1|BJ543926 BJ543926 K. Sato unpublished cDNA li... 64 8e-009
gb|BJ545434.1|BJ545434 BJ545434 K. Sato unpublished cDNA li... 64 8e-009
gb|BJ546633.1|BJ546633 BJ546633 K. Sato unpublished cDNA li... 64 8e-009
gb|BJ548188.1|BJ548188 BJ548188 K. Sato unpublished cDNA li... 64 8e-009
gb|CB877858.1|CB877858 HP06G23T HP Hordeum vulgare subsp. v... 64 8e-009
gb|CB879399.1|CB879399 HP02B03w HP Hordeum vulgare subsp. v... 64 8e-009
gb|CB884195.1|CB884195 HV09B24r HV Hordeum vulgare subsp. v... 64 8e-009
gb|CB884196.1|CB884196 HV09B24u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CB884203.1|CB884203 HV10H06u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CB884210.1|CB884210 HV12O06u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CB884213.1|CB884213 HV14A09u HV Hordeum vulgare subsp. v... 64 8e-009
gb|CD662956.1|CD662956 UCRHV18_03db04_b1 Drought-stressed D... 64 8e-009
gb|CD663748.1|CD663748 UCRHV18_06ca11_b1 Drought-stressed D... 64 8e-009
gb|DW474925.1|DW474925 1-n92 Subtracted libraries from epid... 64 8e-009
gb|CK125397.1|CK125397 BES1824107o07 BES1824 Hordeum vulgar... 64 8e-009
gb|CK125687.1|CK125687 BES1824110a22 BES1824 Hordeum vulgar... 64 8e-009
emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanas... 64 8e-009
emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D... 64 8e-009
emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucana... 64 8e-009
gb|BE438180.1|BE438180 SFR009.B07F990722 ITEC SFR Barley Le... 62 3e-008
gb|BF619991.2|BF619991 HVSMEc0009P04f Hordeum vulgare seedl... 60 1e-007
gb|BI955999.1|BI955999 HVSMEm0025F08f Hordeum vulgare green... 60 1e-007
gb|BE196291.3|BE196291 HVSMEh0091O10f Hordeum vulgare 5-45 ... 60 1e-007
gb|CA000314.1|CA000314 HS09A21u HS Hordeum vulgare subsp. v... 60 1e-007
gb|BF258044.2|BF258044 HVSMEf0014J13f Hordeum vulgare seedl... 58 5e-007
gb|BI949774.1|BI949774 HVSMEl0015O24f Hordeum vulgare spike... 56 2e-006
gb|BF258566.3|BF258566 HVSMEf0016B09f Hordeum vulgare seedl... 56 2e-006
gb|BJ450676.1|BJ450676 BJ450676 K. Sato unpublished cDNA li... 56 2e-006
gb|BJ453971.1|BJ453971 BJ453971 K. Sato unpublished cDNA li... 56 2e-006
gb|BI778131.2|BI778131 EBro07_SQ002_F02_R root, 3 week, red... 56 2e-006
gb|BJ546757.1|BJ546757 BJ546757 K. Sato unpublished cDNA li... 56 2e-006
gb|CB879078.1|CB879078 HP10O03T HP Hordeum vulgare subsp. v... 56 2e-006
gb|CB879831.1|CB879831 HP03O01w HP Hordeum vulgare subsp. v... 56 2e-006
gb|BF266871.2|BF266871 HV_CEa0016E16f Hordeum vulgare seedl... 54 8e-006
gb|BE519918.3|BE519918 HV_CEb0021L03f Hordeum vulgare seedl... 54 8e-006
gb|BM444766.1|BM444766 EBem09_SQ006_G13_R embryo, 1 Day ger... 54 8e-006
gb|BM370310.2|BM370310 EBro08_SQ003_M21_R root, 3 week, dro... 54 8e-006
gb|BJ545156.1|BJ545156 BJ545156 K. Sato unpublished cDNA li... 54 8e-006
gb|U96096.1|HVU96096 Hordeum vulgare endo-1,3-beta-glucanas... 54 8e-006
gb|BG309572.1|BG309572 HVSMEc0011C16f Hordeum vulgare seedl... 52 3e-005
gb|BF261766.2|BF261766 HV_CEa0002C17f Hordeum vulgare seedl... 52 3e-005
gb|BJ456617.1|BJ456617 BJ456617 K. Sato unpublished cDNA li... 52 3e-005
gb|CA019980.1|CA019980 HV13P18r HV Hordeum vulgare subsp. v... 52 3e-005
gb|BI952205.1|BI952205 HVSMEm0005A04f Hordeum vulgare green... 50 1e-004
gb|BJ449157.1|BJ449157 BJ449157 K. Sato unpublished cDNA li... 50 1e-004
gb|BQ766863.1|BQ766863 EBro08_SQ007_G12_R root, 3 week, dro... 50 1e-004
gb|CB878509.1|CB878509 HP08M16T HP Hordeum vulgare subsp. v... 50 1e-004
gb|CB879174.1|CB879174 HP11D02T HP Hordeum vulgare subsp. v... 50 1e-004
gb|AL500833.1|AL500833 AL500833 Hordeum vulgare Barke roots... 48 5e-004
gb|BF253425.2|BF253425 HVSMEf0001G05f Hordeum vulgare seedl... 48 5e-004
gb|AV931182.1|AV931182 AV931182 K. Sato unpublished cDNA li... 48 5e-004
gb|AL450912.1|AL450912 AL450912 Hordeum vulgare Barke etiol... 46 0.002
gb|AL500117.1|AL500117 AL500117 Hordeum vulgare Barke etiol... 46 0.002
gb|BF629481.1|BF629481 HVSMEb0012J16f Hordeum vulgare seedl... 46 0.002
gb|BI951839.1|BI951839 HVSMEm0003C15f Hordeum vulgare green... 46 0.002
gb|BE214349.1|BE214349 HV_CEb0003D01f Hordeum vulgare seedl... 44 0.008
gb|BF261960.1|BF261960 HV_CEa0002L01f Hordeum vulgare seedl... 44 0.008
gb|BM370465.2|BM370465 EBro08_SQ004_F01_R root, 3 week, dro... 44 0.008
gb|BQ767737.1|BQ767737 EBro08_SQ009_P13_R root, 3 week, dro... 44 0.008
gb|AL511140.1|AL511140 AL511140 Hordeum vulgare Barke devel... 42 0.031
gb|BF258250.2|BF258250 HVSMEf0015D16f Hordeum vulgare seedl... 42 0.031
gb|BF266219.3|BF266219 HV_CEa0014I03f Hordeum vulgare seedl... 42 0.031
gb|BQ765468.1|BQ765468 EBro03_SQ007_C08_R root, 3 week, wat... 42 0.031
gb|BJ544200.1|BJ544200 BJ544200 K. Sato unpublished cDNA li... 42 0.031
gb|BF258887.2|BF258887 HVSMEf0016P05f Hordeum vulgare seedl... 40 0.12
gb|BM816772.1|BM816772 HB02H09_T3.ab1 HB Hordeum vulgare su... 40 0.12
gb|CA017450.1|CA017450 HV05D22r HV Hordeum vulgare subsp. v... 40 0.12
gb|CB877505.1|CB877505 HP05C24T HP Hordeum vulgare subsp. v... 40 0.12
gb|CD662424.1|CD662424 UCRHV18_02ae08_b1 Drought-stressed D... 40 0.12
gb|BF618688.2|BF618688 HVSMEc0007E21f Hordeum vulgare seedl... 38 0.48
gb|BI779559.2|BI779559 EBro01_SQ004_G18_R root, 3 week, hyd... 38 0.48
>gb|BQ766726.1|BQ766726 EBro08_SQ006_O23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_O23 5', mRNA sequence
Length = 599
Score = 151 bits (76), Expect = 5e-035
Identities = 237/291 (81%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
||||||||| |||||||||||||||| || ||||||||||||||||| || | ||||| |
Sbjct: 135 tacgccacgctccagccgggcaccacggtgagggacaacggcaacgggctgacctacacc 194
Query: 389 aacctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgccc 448
| ||| |||||||| ||||| ||| || || ||||||| | |||||||||||| ||||
Sbjct: 195 agcctcttcgacgcgatggtcgactccatctacgccgcgttggagaaggccggcacgccg 254
Query: 449 aacgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagc 508
||||||||||| || ||||| |||| ||| ||||| ||||| ||||| ||||||||
Sbjct: 255 aacgtcagggtggtggtgtcggagagcgggtggccgtcggcgggcgggttcggggcatcg 314
Query: 509 gtcgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgccc 568
|| || ||||||||||| ||||||||||| || || |||||| || | ||||||||||
Sbjct: 315 gtggaaaacgcgcggaactacaaccaggggctgattgaccacatccggagcggcacgccg 374
Query: 569 aagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|| || | || || | ||||| | | | |||||||||||||||||||||
Sbjct: 375 aaacggccaggggcgatcgagacgtacatattcgccatgttcaacgagaac 425
Score = 52.0 bits (26), Expect = 3e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggac 306
|||||||||||||||||||| |||||||||
Sbjct: 78 aacgtgtacccttacttcgcctaccgggac 107
>gb|BQ768478.1|BQ768478 EBro08_SQ011_G22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_G22 5', mRNA sequence
Length = 592
Score = 151 bits (76), Expect = 5e-035
Identities = 237/291 (81%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
||||||||| |||||||||||||||| || ||||||||||||||||| || | ||||| |
Sbjct: 65 tacgccacgctccagccgggcaccacggtgagggacaacggcaacgggctgacctacacc 124
Query: 389 aacctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgccc 448
| ||| |||||||| ||||| ||| || || ||||||| | |||||||||||| ||||
Sbjct: 125 agcctcttcgacgcgatggtcgactccatctacgccgcgttggagaaggccggcacgccg 184
Query: 449 aacgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagc 508
||||||||||| || ||||| |||| ||| ||||| ||||| ||||| ||||||||
Sbjct: 185 aacgtcagggtggtggtgtcggagagcgggtggccgtcggcgggcgggttcggggcatcg 244
Query: 509 gtcgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgccc 568
|| || ||||||||||| ||||||||||| || || |||||| || | ||||||||||
Sbjct: 245 gtggaaaacgcgcggaactacaaccaggggctgattgaccacatccggagcggcacgccg 304
Query: 569 aagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|| || | || || | ||||| | | | |||||||||||||||||||||
Sbjct: 305 aaacggccaggggcgatcgagacgtacatattcgccatgttcaacgagaac 355
Score = 52.0 bits (26), Expect = 3e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggac 306
|||||||||||||||||||| |||||||||
Sbjct: 8 aacgtgtacccttacttcgcctaccgggac 37
>gb|M96939.1|BLYGLCNHV Hordeum vulgare glucan endo-1,3-beta-glucosidase (isoenzyme V)
mRNA, complete cds
Length = 1230
Score = 151 bits (76), Expect = 5e-035
Identities = 237/291 (81%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
||||||||| |||||||||||||||| || ||||||||||||||||| || | ||||| |
Sbjct: 637 tacgccacgctccagccgggcaccacggtgagggacaacggcaacgggctgacctacacc 696
Query: 389 aacctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgccc 448
| ||| |||||||| ||||| ||| || || ||||||| | |||||||||||| ||||
Sbjct: 697 agcctcttcgacgcgatggtcgactccatctacgccgcgttggagaaggccggcacgccg 756
Query: 449 aacgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagc 508
||||||||||| || ||||| |||| ||| ||||| ||||| ||||| ||||||||
Sbjct: 757 aacgtcagggtggtggtgtcggagagcgggtggccgtcggcgggcgggttcggggcatcg 816
Query: 509 gtcgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgccc 568
|| || ||||||||||| ||||||||||| || || |||||| || | ||||||||||
Sbjct: 817 gtggaaaacgcgcggaactacaaccaggggctgattgaccacatccggagcggcacgccg 876
Query: 569 aagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|| || | || || | ||||| | | | |||||||||||||||||||||
Sbjct: 877 aaacggccaggggcgatcgagacgtacatattcgccatgttcaacgagaac 927
Score = 52.0 bits (26), Expect = 3e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggac 306
|||||||||||||||||||| |||||||||
Sbjct: 580 aacgtgtacccttacttcgcctaccgggac 609
>gb|CB876783.1|CB876783 HP02G13T HP Hordeum vulgare subsp. vulgare cDNA clone HP02G13
5-PRIME, mRNA sequence
Length = 606
Score = 131 bits (66), Expect = 4e-029
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 97 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgccggg 156
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| ||| | |
Sbjct: 157 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggcgacggc 216
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 217 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacccccaa 276
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 277 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 325
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccacc 355
||||| ||||||| |||||||||||||
Sbjct: 32 tacgcgacgttccggccgggcaccacc 58
>gb|CB877331.1|CB877331 HP04H07T HP Hordeum vulgare subsp. vulgare cDNA clone HP04H07
5-PRIME, mRNA sequence
Length = 549
Score = 131 bits (66), Expect = 4e-029
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 137 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgccggg 196
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| ||| | |
Sbjct: 197 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggcgacggc 256
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 257 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacccccaa 316
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 317 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 365
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccacc 355
||||| ||||||| |||||||||||||
Sbjct: 72 tacgcgacgttccggccgggcaccacc 98
>gb|CB878498.1|CB878498 HP08L24T HP Hordeum vulgare subsp. vulgare cDNA clone HP08L24
5-PRIME, mRNA sequence
Length = 575
Score = 131 bits (66), Expect = 4e-029
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 31 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgccggg 90
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| ||| | |
Sbjct: 91 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggcgacggc 150
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 151 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacccccaa 210
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 211 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 259
>gb|CB879474.1|CB879474 HP02G13w HP Hordeum vulgare subsp. vulgare cDNA clone HP02G13
3-PRIME, mRNA sequence
Length = 682
Score = 131 bits (66), Expect = 4e-029
Identities = 188/229 (82%)
Strand = Plus / Minus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 572 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgccggg 513
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| ||| | |
Sbjct: 512 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggcgacggc 453
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 452 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacccccaa 393
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 392 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 344
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 329 tacgccacgttccagccgggcaccacc 355
||||| ||||||| |||||||||||||
Sbjct: 637 tacgcgacgttccggccgggcaccacc 611
>gb|CB879505.1|CB879505 HP02I04w HP Hordeum vulgare subsp. vulgare cDNA clone HP02I04
3-PRIME, mRNA sequence
Length = 680
Score = 131 bits (66), Expect = 4e-029
Identities = 188/229 (82%)
Strand = Plus / Minus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 499 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgccggg 440
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| ||| | |
Sbjct: 439 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggcgacggc 380
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 379 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacccccaa 320
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 319 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 271
Score = 50.1 bits (25), Expect = 1e-004
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcgacatc-agctggg-tacgcc 334
||||||||||| |||||||| ||| |||||||||||| |||||| |||| |||||
Sbjct: 618 aacgtgtacccctacttcgcctacaaggacaacccgcgggacatccagctcaactacgcg 559
Query: 335 acgttccagccgggcaccacc 355
||||||| |||||||||||||
Sbjct: 558 acgttccggccgggcaccacc 538
>gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-glucosidase (isoenzyme I)
mRNA, 3' end
Length = 1025
Score = 131 bits (66), Expect = 4e-029
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| | |||||||||||
Sbjct: 609 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcggtccggcgcgcccgg 668
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| ||| | |
Sbjct: 669 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggcgacggc 728
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 729 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacccccaa 788
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 789 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 837
Score = 50.1 bits (25), Expect = 1e-004
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcgacatc-agctggg-tacgcc 334
||||||||||| |||||||| ||| |||||||||||| |||||| |||| |||||
Sbjct: 490 aacgtgtacccctacttcgcctacaaggacaacccgcgggacatccagctcaactacgcg 549
Query: 335 acgttccagccgggcaccacc 355
||||||| |||||||||||||
Sbjct: 550 acgttccggccgggcaccacc 570
>gb|BF260325.2|BF260325 HVSMEf0021L05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021L05f, mRNA sequence
Length = 854
Score = 123 bits (62), Expect = 1e-026
Identities = 187/229 (81%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 16 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgccggg 75
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| || | |
Sbjct: 76 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggtgacggc 135
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 136 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacccccaa 195
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 196 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 244
>gb|BF263831.2|BF263831 HV_CEa0007M17f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007M17f, mRNA sequence
Length = 442
Score = 123 bits (62), Expect = 1e-026
Identities = 187/229 (81%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| |||| ||||||||||||
Sbjct: 140 cctgttcgacgccatggtggacgccgtggtggcggcgctggagagggccggcgcgccggg 199
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||| |||| |||| ||| | |
Sbjct: 200 ggtgagggtggtggtgtcggagagcgggtggccgtcgatgagcgggttcgcggcgacggc 259
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | |||||||||||
Sbjct: 260 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggcacgcccaa 319
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||| |||||||||| | | |||||||||||||||||||||||
Sbjct: 320 gaggcgtggcgcgctggagacgtacatcttcgccatgttcaacgagaac 368
>gb|AF515785.1| Hordeum vulgare subsp. vulgare beta-1,3-glucanase II mRNA, complete
cds
Length = 1215
Score = 119 bits (60), Expect = 2e-025
Identities = 331/418 (79%), Gaps = 5/418 (1%)
Strand = Plus / Plus
Query: 247 tggcgggcacnggggngccgntgntcgccaaacgtgtacccttacttcgcgtaccgggac 306
||||| |||| || | |||| || ||||||| ||| ||||| |||||||||||||| |||
Sbjct: 597 tggcgagcaccggcgcgccgctgctcgccaa-cgtctacccctacttcgcgtaccgtgac 655
Query: 307 aacccgcgcga-catcagctggg--tacgccacgttccagccgggcaccaccgtcaggga 363
||||| || || ||||||| | ||||| ||||||||||||||||||||||| | ||
Sbjct: 656 aaccc-cgggagcatcagcctgaactacgcgacgttccagccgggcaccaccgtgcgtga 714
Query: 364 caacggcaacggcctcaactacaacaacctgttcgacgccatggtggacgccgtcgtcgc 423
| | |||||| || | ||||| |||||||||||| |||||||||||||| |||
Sbjct: 715 ccagaacaacgggctgacctacacgtccctgttcgacgcgatggtggacgccgtgtacgc 774
Query: 424 cgcgctcgagaaggccggcgcgcccaacgtcagggtcgtcgtgtccgagancggctggcc 483
||||| ||||||||||||||||| || | ||| || ||||| |||| ||| |||||
Sbjct: 775 ggcgctggagaaggccggcgcgccggcggtgaaggtggtggtgtcggagagcgggtggcc 834
Query: 484 ctcggccggcggcttcggggccagcgtcgacaacgcgcggaaatacaaccagggactcat 543
||||| ||||| || | ||| | || ||| ||||||| ||||||||||| || ||
Sbjct: 835 gtcggcgggcgggtttgcggcgtcggccggcaatgcgcggacgtacaaccaggggctgat 894
Query: 544 cgaccacgtcggccgcggcacgcccaagaggaccggcccgctggagaccttcgtcttcgc 603
| ||||||||||| | ||||||||||||| | | |||||||||| | | |||||||
Sbjct: 895 caaccacgtcggcgggggcacgcccaagaagcgggaggcgctggagacgtacatcttcgc 954
Query: 604 catgttcaacgagaaccagaagggcggcgatcccacggagaagaacttcggcctcttc 661
|||||||||||||||||||||| ||| || ||||||||| || |||||| ||||||
Sbjct: 955 catgttcaacgagaaccagaagaccggggacgccacggagaggagcttcgggctcttc 1012
>gb|AF479647.2| Hordeum vulgare subsp. vulgare beta-1,3-glucanase gene, complete cds
Length = 2135
Score = 119 bits (60), Expect = 2e-025
Identities = 331/418 (79%), Gaps = 5/418 (1%)
Strand = Plus / Plus
Query: 247 tggcgggcacnggggngccgntgntcgccaaacgtgtacccttacttcgcgtaccgggac 306
||||| |||| || | |||| || ||||||| ||| ||||| |||||||||||||| |||
Sbjct: 1535 tggcgagcaccggcgcgccgctgctcgccaa-cgtctacccctacttcgcgtaccgtgac 1593
Query: 307 aacccgcgcga-catcagctggg--tacgccacgttccagccgggcaccaccgtcaggga 363
||||| || || ||||||| | ||||| ||||||||||||||||||||||| | ||
Sbjct: 1594 aaccc-cgggagcatcagcctgaactacgcgacgttccagccgggcaccaccgtgcgtga 1652
Query: 364 caacggcaacggcctcaactacaacaacctgttcgacgccatggtggacgccgtcgtcgc 423
| | |||||| || | ||||| |||||||||||| |||||||||||||| |||
Sbjct: 1653 ccagaacaacgggctgacctacacgtccctgttcgacgcgatggtggacgccgtgtacgc 1712
Query: 424 cgcgctcgagaaggccggcgcgcccaacgtcagggtcgtcgtgtccgagancggctggcc 483
||||| ||||||||||||||||| || | ||| || ||||| |||| ||| |||||
Sbjct: 1713 ggcgctggagaaggccggcgcgccggcggtgaaggtggtggtgtcggagagcgggtggcc 1772
Query: 484 ctcggccggcggcttcggggccagcgtcgacaacgcgcggaaatacaaccagggactcat 543
||||| ||||| || | ||| | || ||| ||||||| ||||||||||| || ||
Sbjct: 1773 gtcggcgggcgggtttgcggcgtcggccggcaatgcgcggacgtacaaccaggggctgat 1832
Query: 544 cgaccacgtcggccgcggcacgcccaagaggaccggcccgctggagaccttcgtcttcgc 603
| ||||||||||| | ||||||||||||| | | |||||||||| | | |||||||
Sbjct: 1833 caaccacgtcggcgggggcacgcccaagaagcgggaggcgctggagacgtacatcttcgc 1892
Query: 604 catgttcaacgagaaccagaagggcggcgatcccacggagaagaacttcggcctcttc 661
|||||||||||||||||||||| ||| || ||||||||| || |||||| ||||||
Sbjct: 1893 catgttcaacgagaaccagaagaccggggacgccacggagaggagcttcgggctcttc 1950
>gb|BF258041.2|BF258041 HVSMEf0014J07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014J07f, mRNA sequence
Length = 570
Score = 115 bits (58), Expect = 3e-024
Identities = 186/229 (81%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaa 450
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 199 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgccggg 258
Query: 451 cgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgt 510
|| ||||| || ||||| |||| ||| ||||| ||||| |||| |||| ||| | |
Sbjct: 259 ggtgagggtggtggtgtcggagagcgggtggccgtcggcgagcgggttcgcggcgacggc 318
Query: 511 cgacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaa 570
||||||||| || ||||||||||| || ||||||||||||||| | ||| |||||
Sbjct: 319 ggacaacgcgagggcgtacaaccaggggctgatcgaccacgtcggcgggggccaccccaa 378
Query: 571 gaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|||| ||||| || ||||||| | | |||||||||||||||||||||||
Sbjct: 379 gaggcccggcgcgttggagacgtacatcttcgccatgttcaacgagaac 427
Score = 50.1 bits (25), Expect = 1e-004
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcgacatc-agctggg-tacgcc 334
||||||||||| |||||||| ||| |||||||||||| |||||| |||| |||||
Sbjct: 80 aacgtgtacccctacttcgcctacaaggacaacccgcgggacatccagctcaactacgcg 139
Query: 335 acgttccagccgggcaccacc 355
||||||| |||||||||||||
Sbjct: 140 acgttccggccgggcaccacc 160
>gb|BE601595.2|BE601595 HVSMEh0098M24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M24f, mRNA sequence
Length = 636
Score = 115 bits (58), Expect = 3e-024
Identities = 308/388 (79%), Gaps = 4/388 (1%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcga-catcagctgg--gtacgc 333
||||| ||||| |||||||||||||| |||||||| || || ||||||| | |||||
Sbjct: 68 aacgtctacccctacttcgcgtaccgtgacaaccc-cgggagcatcagcctgaactacgc 126
Query: 334 cacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaacaacct 393
||||||||||||||||||||||| | ||| | |||||| || | ||||| |||
Sbjct: 127 gacgttccagccgggcaccaccgtgcgtgaccagaacaacgggctgacctacacgtccct 186
Query: 394 gttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaacgt 453
||||||||| |||||||||||||| ||| ||||| ||||||||||||||||| ||
Sbjct: 187 gttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccggcgcgccggcggt 246
Query: 454 cagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcga 513
| ||| || ||||| |||| ||| ||||| ||||| ||||| || | ||| | ||
Sbjct: 247 gaaggtggtggtgtcggagagcgggtggccgtcggcgggcgggtttgcggcgtcggccgg 306
Query: 514 caacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagag 573
||| ||||||| ||||||||||| || ||| ||||||||||| | |||||||||||||
Sbjct: 307 caatgcgcggacgtacaaccaggggctgatcaaccacgtcggcgggggcacgcccaagaa 366
Query: 574 gaccggcccgctggagaccttcgtcttcgccatgttcaacgagaaccagaagggcggcga 633
| | |||||||||| | | ||||||||||||||||||||||||||||| ||| ||
Sbjct: 367 gcgggaggcgctggagacgtacatcttcgccatgttcaacgagaaccagaagaccgggga 426
Query: 634 tcccacggagaagaacttcggcctcttc 661
||||||||| || |||||| ||||||
Sbjct: 427 cgccacggagaggagcttcgggctcttc 454
>emb|AJ271367.1|HVU271367 Hordeum vulgare mRNA for beta-1,3-glucanase
Length = 1257
Score = 115 bits (58), Expect = 3e-024
Identities = 308/388 (79%), Gaps = 4/388 (1%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcga-catcagctgg--gtacgc 333
||||| ||||| |||||||||||||| |||||||| || || ||||||| | |||||
Sbjct: 629 aacgtctacccctacttcgcgtaccgtgacaaccc-cgggagcatcagcctgaactacgc 687
Query: 334 cacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaacaacct 393
||||||||||||||||||||||| | ||| | |||||| || | ||||| |||
Sbjct: 688 gacgttccagccgggcaccaccgtgcgtgaccagaacaacgggctgacctacacgtccct 747
Query: 394 gttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaacgt 453
||||||||| |||||||||||||| ||| ||||| ||||||||||||||||| ||
Sbjct: 748 gttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccggcgcgccggcggt 807
Query: 454 cagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcga 513
| ||| || ||||| |||| ||| ||||| ||||| ||||| || | ||| | ||
Sbjct: 808 gaaggtggtggtgtcggagagcgggtggccgtcggcgggcgggtttgcggcgtcggccgg 867
Query: 514 caacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagag 573
||| ||||||| ||||||||||| || ||| ||||||||||| | |||||||||||||
Sbjct: 868 caatgcgcggacgtacaaccaggggctgatcaaccacgtcggcgggggcacgcccaagaa 927
Query: 574 gaccggcccgctggagaccttcgtcttcgccatgttcaacgagaaccagaagggcggcga 633
| | |||||||||| | | ||||||||||||||||||||||||||||| ||| ||
Sbjct: 928 gcgggaggcgctggagacgtacatcttcgccatgttcaacgagaaccagaagaccgggga 987
Query: 634 tcccacggagaagaacttcggcctcttc 661
||||||||| || |||||| ||||||
Sbjct: 988 cgccacggagaggagcttcgggctcttc 1015
>gb|BI957130.1|BI957130 HVSMEn0007K04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007K04f, mRNA sequence
Length = 560
Score = 101 bits (51), Expect = 4e-020
Identities = 155/190 (81%)
Strand = Plus / Plus
Query: 361 ggacaacggcaacggcctcaactacaacaacctgttcgacgccatggtggacgccgtcgt 420
||||||||||||||| || | ||||| || ||| |||||||| ||||| ||| || ||
Sbjct: 1 ggacaacggcaacgggctgacctacaccagcctcttcgacgcgatggtcgactccatcta 60
Query: 421 cgccgcgctcgagaaggccggcgcgcccaacgtcagggtcgtcgtgtccgagancggctg 480
| ||||||| ||||| |||||| |||| ||||||||||| || ||||| |||| ||| ||
Sbjct: 61 ctccgcgctggagaacgccggcacgccgaacgtcagggtggtggtgtcggagagcgggtg 120
Query: 481 gccctcggccggcggcttcggggccagcgtcgacaacgcgcggaaatacaaccagggact 540
||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||| ||
Sbjct: 121 gccgtcggcgggcgggttcggggcatctgtggaaaacgcgcggaactacaaccaggggct 180
Query: 541 catcgaccac 550
|| ||||||
Sbjct: 181 gattgaccac 190
>gb|AL510583.1|AL510583 AL510583 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05G08u 3',
mRNA sequence
Length = 658
Score = 97.6 bits (49), Expect = 6e-019
Identities = 188/232 (81%), Gaps = 2/232 (0%)
Strand = Plus / Minus
Query: 389 aacctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgccc 448
||||| |||||||||||||| |||||| | ||| |||||||||||||| || |||||
Sbjct: 462 aacctcttcgacgccatggtcgacgccatgtacgcggcgctcgagaaggcaggggcgcca 403
Query: 449 aacgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagc 508
||| ||||| || |||||||||| ||| ||||| || |||||||| |||| ||||| |
Sbjct: 402 ggcgtgagggtggtggtgtccgagaccggatggccgtccgccggcgggttcgcggcca-c 344
Query: 509 gtc-gacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcc 567
| | || ||||||||| |||||||||||| | |||||||| || | ||||||||| ||
Sbjct: 343 gccggagaacgcgcgggcatacaaccagggcatgatcgaccatgtggcccgcggcacacc 284
Query: 568 caagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||| ||| | ||||| | ||| ||| || |||||||||||||||||||||
Sbjct: 283 caataggcctggccccattgaggcctatgtgttcgccatgttcaacgagaac 232
Score = 42.1 bits (21), Expect = 0.031
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 329 tacgccacgttccagccgggc 349
|||||||||||||||||||||
Sbjct: 525 tacgccacgttccagccgggc 505
>gb|BF256955.3|BF256955 HVSMEf0011H13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011H13f, mRNA sequence
Length = 535
Score = 97.6 bits (49), Expect = 6e-019
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 527 tacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggaccggcccgctg 586
||||||||||| || ||||||||||||||| | ||||| ||||||||| ||||| || ||
Sbjct: 104 tacaaccaggggctgatcgaccacgtcggcgggggcacccccaagaggcccggcgcgttg 163
Query: 587 gagaccttcgtcttcgccatgttcaacgagaac 619
||||| | | |||||||||||||||||||||||
Sbjct: 164 gagacgtacatcttcgccatgttcaacgagaac 196
>gb|BU980481.1|BU980481 HA20M14r HA Hordeum vulgare subsp. vulgare cDNA clone HA20M14
5-PRIME, mRNA sequence
Length = 502
Score = 97.6 bits (49), Expect = 6e-019
Identities = 188/232 (81%), Gaps = 2/232 (0%)
Strand = Plus / Plus
Query: 389 aacctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgccc 448
||||| |||||||||||||| |||||| | ||| |||||||||||||| || |||||
Sbjct: 252 aacctcttcgacgccatggtcgacgccatgtacgcggcgctcgagaaggcaggggcgcca 311
Query: 449 aacgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagc 508
||| ||||| || |||||||||| ||| ||||| || |||||||| |||| ||||| |
Sbjct: 312 ggcgtgagggtggtggtgtccgagaccggatggccgtccgccggcgggttcgcggcca-c 370
Query: 509 gtc-gacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcc 567
| | || ||||||||| |||||||||||| | |||||||| || | ||||||||| ||
Sbjct: 371 gccggagaacgcgcgggcatacaaccagggcatgatcgaccatgtggcccgcggcacacc 430
Query: 568 caagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||| ||| | ||||| | ||| ||| || |||||||||||||||||||||
Sbjct: 431 caataggcctggccccattgaggcctatgtgttcgccatgttcaacgagaac 482
Score = 42.1 bits (21), Expect = 0.031
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggc 349
|||||||||||||||||||||
Sbjct: 189 tacgccacgttccagccgggc 209
>gb|BU981210.1|BU981210 HA22P03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22P03
5-PRIME, mRNA sequence
Length = 566
Score = 97.6 bits (49), Expect = 6e-019
Identities = 188/232 (81%), Gaps = 2/232 (0%)
Strand = Plus / Plus
Query: 389 aacctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgccc 448
||||| |||||||||||||| |||||| | ||| |||||||||||||| || |||||
Sbjct: 219 aacctcttcgacgccatggtcgacgccatgtacgcggcgctcgagaaggcaggggcgcca 278
Query: 449 aacgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagc 508
||| ||||| || |||||||||| ||| ||||| || |||||||| |||| ||||| |
Sbjct: 279 ggcgtgagggtggtggtgtccgagaccggatggccgtccgccggcgggttcgcggcca-c 337
Query: 509 gtc-gacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcc 567
| | || ||||||||| |||||||||||| | |||||||| || | ||||||||| ||
Sbjct: 338 gccggagaacgcgcgggcatacaaccagggcatgatcgaccatgtggcccgcggcacacc 397
Query: 568 caagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||| ||| | ||||| | ||| ||| || |||||||||||||||||||||
Sbjct: 398 caataggcctggccccattgaggcctatgtgttcgccatgttcaacgagaac 449
Score = 42.1 bits (21), Expect = 0.031
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggc 349
|||||||||||||||||||||
Sbjct: 156 tacgccacgttccagccgggc 176
>gb|BU981251.1|BU981251 HA23B03r HA Hordeum vulgare subsp. vulgare cDNA clone HA23B03
5-PRIME, mRNA sequence
Length = 487
Score = 97.6 bits (49), Expect = 6e-019
Identities = 188/232 (81%), Gaps = 2/232 (0%)
Strand = Plus / Plus
Query: 389 aacctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgccc 448
||||| |||||||||||||| |||||| | ||| |||||||||||||| || |||||
Sbjct: 219 aacctcttcgacgccatggtcgacgccatgtacgcggcgctcgagaaggcaggggcgcca 278
Query: 449 aacgtcagggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagc 508
||| ||||| || |||||||||| ||| ||||| || |||||||| |||| ||||| |
Sbjct: 279 ggcgtgagggtggtggtgtccgagaccggatggccgtccgccggcgggttcgcggcca-c 337
Query: 509 gtc-gacaacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcc 567
| | || ||||||||| |||||||||||| | |||||||| || | ||||||||| ||
Sbjct: 338 gccggagaacgcgcgggcatacaaccagggcatgatcgaccatgtggcccgcggcacacc 397
Query: 568 caagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||| ||| | ||||| | ||| ||| || |||||||||||||||||||||
Sbjct: 398 caataggcctggccccattgaggcctatgtgttcgccatgttcaacgagaac 449
Score = 42.1 bits (21), Expect = 0.031
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggc 349
|||||||||||||||||||||
Sbjct: 156 tacgccacgttccagccgggc 176
>gb|BQ766640.1|BQ766640 EBro08_SQ006_O15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_O15 5', mRNA sequence
Length = 526
Score = 91.7 bits (46), Expect = 4e-017
Identities = 180/225 (80%)
Strand = Plus / Plus
Query: 395 ttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcccaacgtc 454
|||||||| ||||| ||| || || ||||||| | |||||||||||| |||| ||||||
Sbjct: 9 ttcgacgcgatggtcgactccatctacgccgcgttggagaaggccggcacgccgaacgtc 68
Query: 455 agggtcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcgac 514
||||| || ||||| |||| ||| ||||| ||||| ||||| |||||||| || ||
Sbjct: 69 agggtggtggtgtcggagagcgggtggccgtcggcgggcgggttcggggcatcggtggaa 128
Query: 515 aacgcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagagg 574
||||||||||| ||||||||||| || || |||||| || | |||||||||| || ||
Sbjct: 129 aacgcgcggaactacaaccaggggctgattgaccacatccggagcggcacgccgaaacgg 188
Query: 575 accggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
| || || | ||||| | | | |||||||||||||||||||||
Sbjct: 189 ccaggggcgatcgagacgtacatattcgccatgttcaacgagaac 233
>gb|BJ455256.1|BJ455256 BJ455256 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35p18 3', mRNA sequence
Length = 422
Score = 87.7 bits (44), Expect = 6e-016
Identities = 119/144 (82%)
Strand = Plus / Minus
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
||||||| ||||||||||| || ||| ||||||||||| | ||||||||||||| |
Sbjct: 347 gcgcggacgtacaaccaggggctgatcaaccacgtcggcgggggcacgcccaagaagcgg 288
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaaccagaagggcggcgatccc 637
| |||||||||| | | ||||||||||||||||||||||||||||| ||| || ||
Sbjct: 287 gaggcgctggagacgtacatcttcgccatgttcaacgagaaccagaagaccggggacgcc 228
Query: 638 acggagaagaacttcggcctcttc 661
||||||| || |||||| ||||||
Sbjct: 227 acggagaggagcttcgggctcttc 204
>gb|AL509694.1|AL509694 AL509694 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02J11u 3',
mRNA sequence
Length = 498
Score = 83.8 bits (42), Expect = 9e-015
Identities = 161/197 (81%), Gaps = 3/197 (1%)
Strand = Plus / Minus
Query: 425 gcgctcgagaaggccggcgcgcccaa-cgtcagggtcgtcgtgtccgagancggctggcc 483
|||||||||||||| || ||||||| ||| ||||| || |||||||||| ||| |||||
Sbjct: 486 gcgctcgagaaggcaggggcgcccaggcgtgagggtggtggtgtccgagaccggatggcc 427
Query: 484 ctcggccggcggcttcggggccagcgtcg-acaacgcgcggaaatacaaccagggactca 542
|| |||||||| |||| ||||| || || | ||||||||| |||||||||||| | |
Sbjct: 426 gtccgccggcgggttcgcggcca-cgccggagaacgcgcgggcatacaaccagggcatga 368
Query: 543 tcgaccacgtcggccgcggcacgcccaagaggaccggcccgctggagaccttcgtcttcg 602
||||||| || | ||||||||| ||||| ||| | ||||| | ||| ||| || ||||
Sbjct: 367 tcgaccatgtggcccgcggcacacccaataggcctggccccattgaggcctatgtgttcg 308
Query: 603 ccatgttcaacgagaac 619
|||||||||||||||||
Sbjct: 307 ccatgttcaacgagaac 291
>gb|BJ447497.1|BJ447497 BJ447497 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35p18 5', mRNA sequence
Length = 198
Score = 81.8 bits (41), Expect = 4e-014
Identities = 112/136 (82%)
Strand = Plus / Plus
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
||||||| ||||||||||| || ||| ||||||||||| | ||||||||||||| |
Sbjct: 59 gcgcggacgtacaaccaggggctgatcaaccacgtcggcgggggcacgcccaagaagcgg 118
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaaccagaagggcggcgatccc 637
| |||||||||| | | ||||||||||||||||||||||||||||| ||| || ||
Sbjct: 119 gaggcgctggagacgtacatcttcgccatgttcaacgagaaccagaagaccggngacgcc 178
Query: 638 acggagaagaacttcg 653
||||||| || |||||
Sbjct: 179 acggagaggagcttcg 194
>gb|AV911030.1|AV911030 AV911030 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11m15 3', mRNA sequence
Length = 649
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 426 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 368
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 367 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 308
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 307 gggccgttggagacgtatattttcgccatgttcaacgagaacc 265
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 556 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 497
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 496 aacctcttcgacgccatggt 477
>gb|BJ449523.1|BJ449523 BJ449523 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25g07 5', mRNA sequence
Length = 477
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 277 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 335
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 336 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 395
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 396 gggccgttggagacgtatattttcgccatgttcaacgagaacc 438
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 147 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 206
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 207 aacctcttcgacgccatggt 226
>gb|BJ452679.1|BJ452679 BJ452679 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak39p16 5', mRNA sequence
Length = 598
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 295 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 353
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 354 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 413
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 414 gggccgttggagacgtatattttcgccatgttcaacgagaacc 456
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 165 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 224
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 225 aacctcttcgacgccatggt 244
>gb|BJ452749.1|BJ452749 BJ452749 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40d22 5', mRNA sequence
Length = 553
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 307 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 365
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 366 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 425
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 426 gggccgttggagacgtatattttcgccatgttcaacgagaacc 468
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 177 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 236
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 237 aacctcttcgacgccatggt 256
>gb|BJ456958.1|BJ456958 BJ456958 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25g07 3', mRNA sequence
Length = 464
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 230 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 172
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 171 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 112
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 111 gggccgttggagacgtatattttcgccatgttcaacgagaacc 69
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 360 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 301
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 300 aacctcttcgacgccatggt 281
>gb|BJ458099.1|BJ458099 BJ458099 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30k14 3', mRNA sequence
Length = 640
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 374 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 316
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 315 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 256
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 255 gggccgttggagacgtatattttcgccatgttcaacgagaacc 213
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 504 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 445
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 444 aacctcttcgacgccatggt 425
>gb|BJ460231.1|BJ460231 BJ460231 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak39p16 3', mRNA sequence
Length = 603
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 500 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 442
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 441 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 382
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 381 gggccgttggagacgtatattttcgccatgttcaacgagaacc 339
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 366 acggcaacggcctcaactacaacaacctgttcgacgccatggt 408
||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct: 593 acggcaacggcctgacctacacgaacctcttcgacgccatggt 551
>gb|BJ460297.1|BJ460297 BJ460297 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40d22 3', mRNA sequence
Length = 574
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 288 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 230
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 229 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 170
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 169 gggccgttggagacgtatattttcgccatgttcaacgagaacc 127
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 418 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 359
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 358 aacctcttcgacgccatggt 339
>gb|BJ461506.1|BJ461506 BJ461506 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45f07 3', mRNA sequence
Length = 662
Score = 79.8 bits (40), Expect = 1e-013
Identities = 134/163 (82%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 365 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 307
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 306 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 247
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaacc 620
|| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 246 gggccgttggagacgtatattttcgccatgttcaacgagaacc 204
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 495 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 436
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 435 aacctcttcgacgccatggt 416
>gb|AV909148.1|AV909148 AV909148 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11m15 5', mRNA sequence
Length = 538
Score = 77.8 bits (39), Expect = 6e-013
Identities = 133/162 (82%), Gaps = 2/162 (1%)
Strand = Plus / Plus
Query: 459 tcgtcgtgtccgagancggctggccctcggccggcggcttcggggccagcgtcg-acaac 517
||||||||||||||| ||| ||||| |||||| |||| |||||||| | || || | |||
Sbjct: 378 tcgtcgtgtccgagagcgggtggccgtcggccagcgggttcggggcga-cggcgcagaac 436
Query: 518 gcgcggaaatacaaccagggactcatcgaccacgtcggccgcggcacgcccaagaggacc 577
|||| | |||||||||||| | ||| |||||||||| ||||||||||||||| ||
Sbjct: 437 gcgcaggcgtacaaccagggattgatcaaccacgtcgggaatggcacgcccaagaggccc 496
Query: 578 ggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
|| ||| ||||||| | | |||||||||||||||||||||
Sbjct: 497 gggccgttggagacgtatattttcgccatgttcaacgagaac 538
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 329 tacgccacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaac 388
|||||||| ||| |||||| |||||||| | ||| ||||||||||||| | |||||
Sbjct: 248 tacgccaccttcgcgccgggaaccaccgtgaacgacgacggcaacggcctgacctacacg 307
Query: 389 aacctgttcgacgccatggt 408
||||| ||||||||||||||
Sbjct: 308 aacctcttcgacgccatggt 327
>gb|BM443712.1|BM443712 EBem09_SQ001_E03_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ001_E03 5', mRNA sequence
Length = 350
Score = 71.9 bits (36), Expect = 3e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 582 cgctggagaccttcgtcttcgccatgttcaacgagaaccagaagggcggcgatcccacgg 641
|||||||||| | | ||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 32 cgctggagacgtacatcttcgccatgttcaacgagaaccagaagaccggggacgccacgg 91
Query: 642 agaagaacttcggcctcttc 661
||| || |||||| ||||||
Sbjct: 92 agaggagcttcgggctcttc 111
>gb|BI954588.1|BI954588 HVSMEm0018L20f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0018L20f, mRNA sequence
Length = 682
Score = 69.9 bits (35), Expect = 1e-010
Identities = 142/174 (81%), Gaps = 4/174 (2%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcga-catcagctgg--gtacgc 333
||||| ||||| |||||||||||||| |||||||| || || ||||||| | |||||
Sbjct: 177 aacgtctacccctacttcgcgtaccgtgacaaccc-cgggagcatcagcctgaactacgc 235
Query: 334 cacgttccagccgggcaccaccgtcagggacaacggcaacggcctcaactacaacaacct 393
||||||||||||||||||||||| | ||| | |||||| || | ||||| |||
Sbjct: 236 gacgttccagccgggcaccaccgtgcgtgaccagaacaacgggctgacctacacgtccct 295
Query: 394 gttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcc 447
||||||||| |||||||||||||| ||| ||||| |||||||||||||||||
Sbjct: 296 gttcgacgcgatggtggacgccgtgtacgcggcgctggagaaggccggcgcgcc 349
>gb|BJ450923.1|BJ450923 BJ450923 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31p24 5', mRNA sequence
Length = 614
Score = 69.9 bits (35), Expect = 1e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 560 ggcacgcccaagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||||||||||||||| ||| ||| ||||||| | | |||||||||||||||||||||||
Sbjct: 382 ggcacgcccaagaggcccgtgccgttggagacgtacatcttcgccatgttcaacgagaac 441
Query: 620 cagaagg 626
|| ||||
Sbjct: 442 caaaagg 448
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 366 acggcaacggcctcaactacaacaacctgttcgacgccatggt 408
||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 188 acggcaacggcctcacctacacaaacctcttcgacgccatggt 230
>gb|BJ454422.1|BJ454422 BJ454422 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24f23 5', mRNA sequence
Length = 669
Score = 69.9 bits (35), Expect = 1e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 560 ggcacgcccaagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||||||||||||||| ||| ||| ||||||| | | |||||||||||||||||||||||
Sbjct: 372 ggcacgcccaagaggcccgtgccgttggagacgtacatcttcgccatgttcaacgagaac 431
Query: 620 cagaagg 626
|| ||||
Sbjct: 432 caaaagg 438
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 366 acggcaacggcctcaactacaacaacctgttcgacgccatggt 408
||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 178 acggcaacggcctcacctacacaaacctcttcgacgccatggt 220
>gb|BJ462228.1|BJ462228 BJ462228 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24f23 3', mRNA sequence
Length = 604
Score = 69.9 bits (35), Expect = 1e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 560 ggcacgcccaagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||||||||||||||| ||| ||| ||||||| | | |||||||||||||||||||||||
Sbjct: 400 ggcacgcccaagaggcccgtgccgttggagacgtacatcttcgccatgttcaacgagaac 341
Query: 620 cagaagg 626
|| ||||
Sbjct: 340 caaaagg 334
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 366 acggcaacggcctcaactacaacaacctgttcgacgccatggt 408
||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 594 acggcaacggcctcacctacacaaacctcttcgacgccatggt 552
>gb|AY239039.1| Hordeum vulgare subsp. vulgare clone SMEm0025e22 glucan
endo-1,3-beta-D-glucosidase mRNA, partial cds
Length = 1074
Score = 69.9 bits (35), Expect = 1e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 560 ggcacgcccaagaggaccggcccgctggagaccttcgtcttcgccatgttcaacgagaac 619
||||||||||||||| ||| ||| ||||||| | | |||||||||||||||||||||||
Sbjct: 785 ggcacgcccaagaggcccgtgccgttggagacgtacatcttcgccatgttcaacgagaac 844
Query: 620 cagaagg 626
|| ||||
Sbjct: 845 caaaagg 851
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 366 acggcaacggcctcaactacaacaacctgttcgacgccatggt 408
||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 591 acggcaacggcctcacctacacaaacctcttcgacgccatggt 633
>gb|CD663219.1|CD663219 UCRHV18_04da12_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_04da12, mRNA sequence
Length = 541
Score = 67.9 bits (34), Expect = 5e-010
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 585 tggagaccttcgtcttcgccatgttcaacgagaaccagaagg 626
||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 395 tggagacctacgtcttctccatgttcaacgagaaccagaagg 354
>gb|AY239038.1| Hordeum vulgare subsp. vulgare clone CEa0006o08 glucan
endo-1,3-beta-D-glucosidase mRNA, complete cds
Length = 1287
Score = 67.9 bits (34), Expect = 5e-010
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 542 atcgaccacgtcggccgcggcacgcccaagaggaccggcccgctggagaccttcgtcttc 601
|||||||||||||| ||||||||||||||| ||| ||| ||||||| | | |||||
Sbjct: 929 atcgaccacgtcgggaagggcacgcccaagaggcccgtgccgttggagacgtacatcttc 988
Query: 602 gccatgttcaacgagaac 619
||||||||||||||||||
Sbjct: 989 gccatgttcaacgagaac 1006
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 366 acggcaacggcctcaactacaacaacctgttcgacgccatggt 408
||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 753 acggcaacggcctcacctacacaaacctcttcgacgccatggt 795
>gb|BF064576.1|BF064576 HV_CEb0015P01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015P01f, mRNA sequence
Length = 605
Score = 65.9 bits (33), Expect = 2e-009
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 546 accacgtcggccgcggcacgcccaagaggaccggcccgctggagaccttcgtcttcgcca 605
||||||||||| | ||||||||||||| | | |||||||||| | | |||||||||
Sbjct: 303 accacgtcggcggtggcacgcccaagaagcgggaggcgctggagacgtacatcttcgcca 244
Query: 606 tgttcaacgagaaccagaagggcggcgatcccacggagaagaacttcgg 654
|||||||||||||||||||| ||| || ||||||||| || ||||||
Sbjct: 243 tgttcaacgagaaccagaagaccggggacgccacggagaggagcttcgg 195
>gb|BQ764120.1|BQ764120 EBro03_SQ006_G12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_G12 5', mRNA sequence
Length = 309
Score = 65.9 bits (33), Expect = 2e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcc 447
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 245 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgcc 301
Score = 50.1 bits (25), Expect = 1e-004
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcgacatc-agctggg-tacgcc 334
||||||||||| |||||||| ||| |||||||||||| |||||| |||| |||||
Sbjct: 126 aacgtgtacccctacttcgcctacaaggacaacccgcgggacatccagctcaactacgcg 185
Query: 335 acgttccagccgggcaccacc 355
||||||| |||||||||||||
Sbjct: 186 acgttccggccgggcaccacc 206
>gb|CA023386.1|CA023386 HZ46B06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46B06
5-PRIME, mRNA sequence
Length = 531
Score = 65.9 bits (33), Expect = 2e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 391 cctgttcgacgccatggtggacgccgtcgtcgccgcgctcgagaaggccggcgcgcc 447
||||||||||||||||||||||||||| || || ||||| ||| ||||||||||||
Sbjct: 457 cctgttcgacgccatggtggacgccgtggtggcggcgctggagcgggccggcgcgcc 513
Score = 50.1 bits (25), Expect = 1e-004
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 277 aacgtgtacccttacttcgcgtaccgggacaacccgcgcgacatc-agctggg-tacgcc 334
||||||||||| |||||||| ||| |||||||||||| |||||| |||| |||||
Sbjct: 338 aacgtgtacccctacttcgcctacaaggacaacccgcgggacatccagctcaactacgcg 397
Query: 335 acgttccagccgggcaccacc 355
||||||| |||||||||||||
Sbjct: 398 acgttccggccgggcaccacc 418
>gb|BE420625.1|BE420625 HWM000.H02 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.H02, mRNA sequence
Length = 1206
Score = 63.9 bits (32), Expect = 8e-009
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 587 gagaccttcgtcttcgccatgttcaacgagaaccagaagg 626
||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 211 gagacctacgtcttctccatgttcaacgagaaccagaagg 250
>gb|BE421248.1|BE421248 HWM007.D01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM007.D01, mRNA sequence
Length = 813
Score = 63.9 bits (32), Expect = 8e-009
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 587 gagaccttcgtcttcgccatgttcaacgagaaccagaagg 626
||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 205 gagacctacgtcttctccatgttcaacgagaaccagaagg 244
>gb|BE421306.1|BE421306 HWM007.H11 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM007.H11, mRNA sequence
Length = 941
Score = 63.9 bits (32), Expect = 8e-009
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 587 gagaccttcgtcttcgccatgttcaacgagaaccagaagg 626
||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 195 gagacctacgtcttctccatgttcaacgagaaccagaagg 234
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,395
Number of Sequences: 312970
Number of extensions: 90395
Number of successful extensions: 27566
Number of sequences better than 0.5: 157
Number of HSP's better than 0.5 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27160
Number of HSP's gapped (non-prelim): 365
length of query: 891
length of database: 175,134,539
effective HSP length: 19
effective length of query: 872
effective length of database: 169,188,109
effective search space: 147532031048
effective search space used: 147532031048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)