BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804972.2.1
(1311 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare su... 394 e-108
gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. v... 359 2e-097
gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. v... 359 2e-097
gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedl... 357 6e-097
gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-a... 295 2e-078
gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedl... 291 3e-077
gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. v... 291 3e-077
gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. v... 291 3e-077
gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. v... 291 3e-077
gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. v... 291 3e-077
gb|AL505150.1|AL505150 AL505150 Hordeum vulgare Barke roots... 289 1e-076
gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA li... 283 7e-075
gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA li... 283 7e-075
gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedl... 270 1e-070
gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. v... 266 2e-069
gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 ... 264 7e-069
gb|BF259786.2|BF259786 HVSMEf0020E05f Hordeum vulgare seedl... 254 6e-066
gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. v... 248 4e-064
gb|AV931570.1|AV931570 AV931570 K. Sato unpublished cDNA li... 238 4e-061
gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. v... 238 4e-061
gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. v... 232 2e-059
gb|BI960410.1|BI960410 HVSMEn0024I04f Hordeum vulgare rachi... 224 6e-057
gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. v... 222 2e-056
gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. v... 218 4e-055
gb|AV918868.1|AV918868 AV918868 K. Sato unpublished cDNA li... 204 5e-051
gb|CA027702.1|CA027702 HZ59M02r HZ Hordeum vulgare subsp. v... 204 5e-051
gb|BI955632.1|BI955632 HVSMEm0023N15f Hordeum vulgare green... 184 5e-045
gb|BG343982.1|BG343982 HVSMEg0007E19f Hordeum vulgare pre-a... 182 2e-044
gb|BU976322.1|BU976322 HA03I06u HA Hordeum vulgare subsp. v... 176 1e-042
gb|CA000510.1|CA000510 HS08E02u HS Hordeum vulgare subsp. v... 174 5e-042
gb|AJ463296.1|AJ463296 AJ463296 S00002 Hordeum vulgare subs... 172 2e-041
gb|BE454559.2|BE454559 HVSMEh0094E03f Hordeum vulgare 5-45 ... 165 5e-039
gb|BF265665.2|BF265665 HV_CEa0013A06f Hordeum vulgare seedl... 165 5e-039
gb|AV934049.1|AV934049 AV934049 K. Sato unpublished cDNA li... 165 5e-039
gb|AV934152.1|AV934152 AV934152 K. Sato unpublished cDNA li... 165 5e-039
gb|BJ544054.1|BJ544054 BJ544054 K. Sato unpublished cDNA li... 165 5e-039
gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgar... 165 5e-039
gb|AV936300.1|AV936300 AV936300 K. Sato unpublished cDNA li... 161 7e-038
gb|AV934159.1|AV934159 AV934159 K. Sato unpublished cDNA li... 159 3e-037
gb|AV936403.1|AV936403 AV936403 K. Sato unpublished cDNA li... 159 3e-037
gb|AL502427.1|AL502427 AL502427 Hordeum vulgare Barke roots... 155 4e-036
gb|AL502063.1|AL502063 AL502063 Hordeum vulgare Barke roots... 153 2e-035
gb|AV936413.1|AV936413 AV936413 K. Sato unpublished cDNA li... 151 7e-035
gb|BM372782.2|BM372782 EBpi05_SQ003_O16_R pistil, 8 DPA, no... 151 7e-035
gb|AL450961.1|AL450961 AL450961 Hordeum vulgare Barke etiol... 141 7e-032
gb|AJ436475.1|AJ436475 AJ436475 S00002 Hordeum vulgare subs... 141 7e-032
gb|BQ665501.1|BQ665501 HX03O06u HX Hordeum vulgare subsp. v... 141 7e-032
gb|CA017187.1|CA017187 HV14G15u HV Hordeum vulgare subsp. v... 141 7e-032
gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. v... 137 1e-030
gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedl... 135 4e-030
gb|BU972166.1|BU972166 HB20N02r BC Hordeum vulgare subsp. v... 135 4e-030
gb|BF258617.2|BF258617 HVSMEf0016D02f Hordeum vulgare seedl... 131 6e-029
gb|BF259291.3|BF259291 HVSMEf0018M18f Hordeum vulgare seedl... 129 3e-028
gb|AV911222.1|AV911222 AV911222 K. Sato unpublished cDNA li... 129 3e-028
gb|AL504779.1|AL504779 AL504779 Hordeum vulgare Barke roots... 127 1e-027
gb|BF265663.2|BF265663 HV_CEa0013A04f Hordeum vulgare seedl... 123 2e-026
gb|BI953687.1|BI953687 HVSMEm0013N22f Hordeum vulgare green... 119 2e-025
gb|AV909332.1|AV909332 AV909332 K. Sato unpublished cDNA li... 117 1e-024
gb|AL500247.1|AL500247 AL500247 Hordeum vulgare Barke etiol... 98 9e-019
gb|BM376116.1|BM376116 EBma01_SQ002_G11_R maternal, 4 DPA, ... 94 1e-017
gb|BQ662792.1|BQ662792 HS04D07u HS Hordeum vulgare subsp. v... 94 1e-017
gb|AV936412.1|AV936412 AV936412 K. Sato unpublished cDNA li... 90 2e-016
gb|BQ762152.1|BQ762152 EBpi01_SQ005_P20_R pistil, 1 DPA, no... 88 9e-016
gb|BM097482.2|BM097482 EBro05_SQ003_L07_R root, 3 week, red... 70 2e-010
gb|BU984648.1|BU984648 HF04J02r HF Hordeum vulgare subsp. v... 70 2e-010
gb|CA001366.1|CA001366 HS18C15u HS Hordeum vulgare subsp. v... 70 2e-010
emb|AJ234689.1|HVU234689 Hordeum vulgare genomic DNA fragme... 68 8e-010
gb|BU996119.1|BU996119 HM12I01r HM Hordeum vulgare subsp. v... 60 2e-007
gb|AL503414.1|AL503414 AL503414 Hordeum vulgare Barke roots... 56 3e-006
gb|BU980262.1|BU980262 HA20C14r HA Hordeum vulgare subsp. v... 56 3e-006
gb|BG301229.1|BG301229 HVSMEb0020B01f Hordeum vulgare seedl... 54 1e-005
gb|BI957284.1|BI957284 HVSMEn0008K05f Hordeum vulgare rachi... 54 1e-005
gb|BF066116.1|BF066116 HV_CEb0014O07f Hordeum vulgare seedl... 54 1e-005
gb|BF066138.1|BF066138 HV_CEb0014P07f Hordeum vulgare seedl... 54 1e-005
gb|BI958105.1|BI958105 HVSMEn0013G15f Hordeum vulgare rachi... 54 1e-005
gb|BI958862.1|BI958862 HVSMEn0016O20f Hordeum vulgare rachi... 54 1e-005
gb|BI960557.1|BI960557 HVSMEn0025A09f Hordeum vulgare rachi... 54 1e-005
gb|BG344152.2|BG344152 HVSMEg0007N17f Hordeum vulgare pre-a... 54 1e-005
gb|BQ763369.1|BQ763369 EBro02_SQ008_J04_R root, 3 week, hyd... 54 1e-005
gb|BQ767762.1|BQ767762 EBro08_SQ009_D21 _R root, 3 week, dr... 54 1e-005
gb|AV836450.1|AV836450 AV836450 K. Sato unpublished cDNA li... 52 5e-005
gb|BU986702.1|BU986702 HF12K17r HF Hordeum vulgare subsp. v... 48 7e-004
gb|BI957282.1|BI957282 HVSMEn0008K03f Hordeum vulgare rachi... 46 0.003
gb|BI959591.1|BI959591 HVSMEn0020F03f Hordeum vulgare rachi... 46 0.003
gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DA... 44 0.012
gb|BF262654.2|BF262654 HV_CEa0004J07f Hordeum vulgare seedl... 44 0.012
gb|CA024376.1|CA024376 HZ49C05r HZ Hordeum vulgare subsp. v... 40 0.18
>gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01C06_T3.ab1 similar to Aldehyde reductase,Hydrogen
dehydrogenase,Alcohol dehydrogenase,Cinnamyl-alcohol
dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,Cinnamoyl-CoA reductase,Transferred entry:
1.18.99.1,Carbonyl reductase (NADPH),Dihydrokaempferol
4-reductase,, mRNA sequence
Length = 847
Score = 394 bits (199), Expect = e-108
Identities = 584/713 (81%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 70 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 129
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| ||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct: 130 aagctcctcctccaccgcggctacactgtccgcgccaccgtccgggacaccgccgacccc 189
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 190 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 249
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 250 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 309
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 310 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 369
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 370 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 429
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 430 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 489
Query: 534 acagttgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggtat 593
||||||||||||||||||||| | || | | || |||| ||| |||||||||||
Sbjct: 490 gtagttgacgagacatggttttcaagtgcagaggtctgcgaaaagaataagcaatggtat 549
Query: 594 attttgtccaagacgctggcagaggaggctgcttggaagttctcaagggataatggactt 653
| | |||||||| || || ||||||||||| ||||||||| ||| ||||||||| |
Sbjct: 550 gtgctatccaagacccttgccgaggaggctgcatggaagttcgcaaaagataatggatta 609
Query: 654 gaaatcgttactataaacccagcgatggttattggtcccctgctgcagcctacactaaat 713
|||| |||| ||||| ||| | ||||| |||||||||||| ||||||||||||| |||
Sbjct: 610 naaataattacaataaatccaacaatggtcattggtcccctgttgcagcctacactgaat 669
Query: 714 accagtgctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaatttt 773
|| ||||| |||||||| ||||| | || ||||| ||||| |||||||| || ||||
Sbjct: 670 actagtgcagaagcaatattgaagnttataaatggatcatcttctacatacgcccatttc 729
Query: 774 tgctttggatgggttaatgtcaaggatgttgccctggcccatatccttgcata 826
|||||||||||||| || || || |||||||||||||| |||||||| |||||
Sbjct: 730 tgctttggatgggtaaacgttaaagatgttgccctggcacatatcctagcata 782
>gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. vulgare cDNA clone HX03O06
5-PRIME, mRNA sequence
Length = 667
Score = 359 bits (181), Expect = 2e-097
Identities = 508/617 (82%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 47 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 106
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 107 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 166
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 167 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 226
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 227 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 286
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 287 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 346
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 347 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 406
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 407 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 466
Query: 534 acagttgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggtat 593
||||||||||||||||||||| | || | | || |||| |||||||||||||||
Sbjct: 467 gtagttgacgagacatggttttcaagtgcagaggtctgcgaaaagaatcagcaatggtat 526
Query: 594 attttgtccaagacgctggcagaggaggctgcttggaagttctcaagggataatggactt 653
| | |||||||| || || ||||||||||| ||||||||| ||| ||||||||| |
Sbjct: 527 gtgctatccaagacccttgccgaggaggctgcatggaagttcgcaaaagataatggatta 586
Query: 654 gaaatcgttactataaacccagcgatggttattggtcccctgctgcagcctacactaaat 713
||||| |||| ||||| ||| | ||||| |||||||||||| ||||||||||||| |||
Sbjct: 587 gaaataattacaataaatccaacaatggtcattggtcccctgttgcagcctacactgaat 646
Query: 714 accagtgctgaagcaat 730
|| ||||| ||||||||
Sbjct: 647 actagtgcagaagcaat 663
>gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. vulgare cDNA clone HF12C17
5-PRIME, mRNA sequence
Length = 683
Score = 359 bits (181), Expect = 2e-097
Identities = 508/617 (82%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 63 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 122
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 123 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 182
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 183 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 242
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 243 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 302
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 303 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 362
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 363 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 422
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 423 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 482
Query: 534 acagttgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggtat 593
||||||||||||||||||||| | || | | || |||| |||||||||||||||
Sbjct: 483 gtagttgacgagacatggttttcaagtgcagaggtctgcgaaaagaatcagcaatggtat 542
Query: 594 attttgtccaagacgctggcagaggaggctgcttggaagttctcaagggataatggactt 653
| | |||||||| || || ||||||||||| ||||||||| ||| ||||||||| |
Sbjct: 543 gtgctatccaagacccttgccgaggaggctgcatggaagttcgcaaaagataatggatta 602
Query: 654 gaaatcgttactataaacccagcgatggttattggtcccctgctgcagcctacactaaat 713
||||| |||| ||||| ||| | ||||| |||||||||||| ||||||||||||| |||
Sbjct: 603 gaaataattacaataaatccaacaatggtcattggtcccctgttgcagcctacactgaat 662
Query: 714 accagtgctgaagcaat 730
|| ||||| ||||||||
Sbjct: 663 actagtgcagaagcaat 679
>gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007P02f, mRNA sequence
Length = 837
Score = 357 bits (180), Expect = 6e-097
Identities = 581/712 (81%), Gaps = 2/712 (0%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 92 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 151
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 152 aagctcctcctccaccgcggctacaccgtccgcgccaccgtccgggacaccgccgacccc 211
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 212 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 271
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 272 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 331
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 332 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 391
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 392 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 451
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 452 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 511
Query: 534 acagttgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggtat 593
||||||||||||||||||||| | || | | || |||| ||| |||||||||||
Sbjct: 512 gtagttgacgagacatggttttcaagtgcagaggtctgcgaaaagaataagcaatggtat 571
Query: 594 attttgtccaagacgctggcagaggaggctgcttggaagttctcaagggataatggactt 653
| | |||||||| || || ||||||||||| ||||||||| ||| ||||||||| ||
Sbjct: 572 gtgctatccaagacccttgccgaggaggctgcatggaagttcgcaaaagataatggattt 631
Query: 654 gaaatcgttactataaacccagcgatggttattggtcccctgctgcagcctacactaaat 713
||||| |||| ||||| || | ||||| |||||||||||| ||||||||||||| |||
Sbjct: 632 gaaataattacaataaatcccaccatggtcattggtcccctgttgcagcctacactgaat 691
Query: 714 accagtgctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaatttt 773
| |||| |||||||| ||||||| || ||||| ||||| ||||||| |||||||
Sbjct: 692 tcttgtgcagaagcaatattgaagtttattaatggatcatcttctacat-cgccaatttc 750
Query: 774 tgctttggatgggttaatgtcaaggatgttgccctggcccatatccttgcat 825
||| |||||||||| || || || |||||||| ||||| ||| |||| ||||
Sbjct: 751 tgc-ttggatgggtaaacgttaaagatgttgcgctggcacatttcctagcat 801
>gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003N13f, mRNA sequence
Length = 1042
Score = 295 bits (149), Expect = 2e-078
Identities = 542/673 (80%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 16 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 75
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 76 aagctcctcctccaccgcggctacaccgtccgcgccaccgtccgggacaccgccgacccc 135
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 136 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 195
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 196 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 255
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 256 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 315
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
|||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 316 acagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 375
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||| |||||||| |||| ||||| |||||||| ||
Sbjct: 376 atcgtaacctcatccatggctgcttgtgcctacaatgggaaaccaagaactcctgatgtg 435
Query: 534 acagttgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggtat 593
||||||||||||||||||||| | || | | || |||| ||| |||||||||||
Sbjct: 436 gtagttgacgagacatggttttcaagtgcagaggtctgcgaaaagaataagcaatggtat 495
Query: 594 attttgtccaagacgctggcagaggaggctgcttggaagttctcaagggataatggactt 653
| | |||||||| || || ||||||||||| ||||||||| ||| ||||||||| |
Sbjct: 496 gtgctatccaagacccttgccgaggaggctgcatggaagttcgcaaaagataatggaata 555
Query: 654 gaaatcgttactataaacccagcgatggttattggtcccctgctgcagcctacactaaat 713
|||| ||| ||||| || | |||| |||||||||||| |||| |||||||| |||
Sbjct: 556 gaaaataatacaataaattcaacaatgggcattggtcccctgttgcaacctacactgaat 615
Query: 714 accagtgctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaatttt 773
|| | ||| |||||||| || |||| || ||||| ||||| |||||||| |||||||
Sbjct: 616 actaatgcagaagcaatattggagtttataaatggatcatcttctacatacgccaatttc 675
Query: 774 tgctttggatggg 786
|| ||||||||||
Sbjct: 676 tgttttggatggg 688
>gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002I16f, mRNA sequence
Length = 609
Score = 291 bits (147), Expect = 3e-077
Identities = 369/443 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 76 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 135
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 136 aagctcctcctccaccgcggctacaccgtccgcgccaccgtccgggacaccgccgacccc 195
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 196 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 255
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 256 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 315
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 316 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 375
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 376 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 435
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 436 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 495
Query: 534 acagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 496 gtagttgacgagacatggttttc 518
>gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. vulgare cDNA clone HA07C19
5-PRIME, mRNA sequence
Length = 579
Score = 291 bits (147), Expect = 3e-077
Identities = 369/443 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 95 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 154
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 155 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 214
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 215 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 274
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 275 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 334
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 335 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 394
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 395 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 454
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 455 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 514
Query: 534 acagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 515 gtagttgacgagacatggttttc 537
>gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. vulgare cDNA clone HS04D07
5-PRIME, mRNA sequence
Length = 563
Score = 291 bits (147), Expect = 3e-077
Identities = 369/443 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 79 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 138
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 139 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 198
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 199 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 258
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 259 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 318
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 319 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 378
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 379 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 438
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 439 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 498
Query: 534 acagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 499 gtagttgacgagacatggttttc 521
>gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. vulgare cDNA clone HF11K09
5-PRIME, mRNA sequence
Length = 571
Score = 291 bits (147), Expect = 3e-077
Identities = 369/443 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 89 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 148
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 149 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 208
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 209 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 268
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 269 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 328
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 329 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 388
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 389 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 448
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 449 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 508
Query: 534 acagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 509 gtagttgacgagacatggttttc 531
>gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14G15
5-PRIME, mRNA sequence
Length = 568
Score = 291 bits (147), Expect = 3e-077
Identities = 369/443 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 109 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 168
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 169 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 228
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 229 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 288
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 289 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 348
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 349 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 408
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 409 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 468
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 469 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 528
Query: 534 acagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 529 gtagttgacgagacatggttttc 551
>gb|AL505150.1|AL505150 AL505150 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I24V 5', mRNA sequence
Length = 700
Score = 289 bits (146), Expect = 1e-076
Identities = 424/517 (82%)
Strand = Plus / Plus
Query: 119 ggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggct 178
||||||||||||||||||||||||||| || || ||||||| |||||| | |||| |||
Sbjct: 93 ggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgnctcctggctcgtcaagct 152
Query: 179 cctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaagaa 238
||||||| |||| ||||||||||||||||||||||| || |||||||| ||||| |||||
Sbjct: 153 cctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgaccccaagaa 212
Query: 239 aacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaagctag 298
||| ||||||||| || |||| || || ||||| ||||||||||| || ||||| ||
Sbjct: 213 aacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaagcaag 272
Query: 299 cctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtatttcatac 358
| || | ||||| || ||||||||||||| | || |||||| ||| || || ||
Sbjct: 273 cttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttccacac 332
Query: 359 tgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgacccagcagt 418
|| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 333 ggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgacccagcagt 392
Query: 419 taagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtggttgt 478
|| || || |||||||||||| |||| |||||||| || || ||||| | ||| | ||
Sbjct: 393 caatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtgatcgt 452
Query: 479 aacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtcacagt 538
||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| || |||
Sbjct: 453 aacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtggtagt 512
Query: 539 tgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggtatatttt 598
|||||||||||||||||| | || | | || |||| ||||||||||||||| | |
Sbjct: 513 tgacgagacatggttttcaagtgcagaggtctgcgaaaagaatcagcaatggtatgtgct 572
Query: 599 gtccaagacgctggcagaggaggctgcttggaagttc 635
|||||||| || || ||||||||||| |||||||||
Sbjct: 573 atccaagacccttgccgaggaggctgcatggaagttc 609
>gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i12 5', mRNA sequence
Length = 585
Score = 283 bits (143), Expect = 7e-075
Identities = 368/443 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 96 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 155
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| ||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct: 156 aagctcctcctccaccgcggctacactgtccgcgccaccgtccgggacaccgccgacccc 215
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 216 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 275
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 276 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 335
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 336 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 395
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 396 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 455
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 456 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 515
Query: 534 acagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 516 gtagttgacgagacatggttttc 538
>gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23e18 5', mRNA sequence
Length = 584
Score = 283 bits (143), Expect = 7e-075
Identities = 368/443 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 96 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 155
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| ||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct: 156 aagctcctcctccaccgcggctacactgtccgcgccaccgtccgggacaccgccgacccc 215
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 216 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 275
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 276 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 335
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 336 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 395
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 396 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 455
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 456 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 515
Query: 534 acagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 516 gtagttgacgagacatggttttc 538
>gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003C11f, mRNA sequence
Length = 495
Score = 270 bits (136), Expect = 1e-070
Identities = 346/416 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 75 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 134
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 135 aagctcctcctccaccgcggctacaccgtccgcgccaccgtccgggacaccgccgacccc 194
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 195 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 254
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 255 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 314
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 315 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 374
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 375 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 434
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctga 529
| ||||| ||||| ||||||||||| |||||||| |||| |||||| ||||||||
Sbjct: 435 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctga 490
>gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. vulgare cDNA clone HB24O01
5-PRIME, mRNA sequence
Length = 478
Score = 266 bits (134), Expect = 2e-069
Identities = 355/429 (82%)
Strand = Plus / Plus
Query: 128 ggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctcctcga 187
|||||||||||||||||| || || |||||||| |||||| | |||| |||||||||| |
Sbjct: 11 ggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtcaagctcctcctcca 70
Query: 188 ccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaagaaaacattgca 247
||| ||||||||||||||||||||||| || |||||||| ||||| |||||||| |||||
Sbjct: 71 ccggggctacaccgtccgcgccaccgtccgggacaccgccgaccccaagaaaacgttgca 130
Query: 248 cctgactgcgttggatggtgctaaggataggctgcacttatttaaagctagcctgctaga 307
|||| || |||| || || ||||| ||||||||||| || ||||| ||| || | ||
Sbjct: 131 cctgcaggccctggaaggagccaaggagaggctgcacttgttcaaagcaagcttgttgga 190
Query: 308 agagggttctttcgatgctgcagttcatggatgcgacactgtatttcatactgcctctcc 367
||| || |||| |||||||| | || |||||| ||| || || || || |||||
Sbjct: 191 agaaggcactttngatgctgccatcgccggctgcgactgtgtcttccacacggcttctcc 250
Query: 368 cttttatcacaatgtcaaggatgctaaggcagagttacttgacccagcagttaagggaac 427
||||||||||||||||||||| ||||||| |||||||||||||||||||| || || ||
Sbjct: 251 cttttatcacaatgtcaaggaccctaaggctgagttacttgacccagcagtcaatggtac 310
Query: 428 actcaatgttctcggttcatgcaagaaagcttctattaaaaaggtggttgtaacatcatc 487
|||||||||||| |||| |||||||| || || ||||| | ||| | ||||| |||||
Sbjct: 311 gctcaatgttctccgttcctgcaagaaggcctcaattaagagagtgatcgtaacctcatc 370
Query: 488 tatggctgctgtagcctacaacgggaggccaaggactcctgaggtcacagttgacgagac 547
||||||||||| |||||||| |||| |||||| |||||||| || ||||||||||||
Sbjct: 371 catggctgctgttgcctacaatgggaagccaagaactcctgatgtggtagttgacgagac 430
Query: 548 atggttttc 556
|||||||||
Sbjct: 431 atggttttc 439
>gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092C06f, mRNA sequence
Length = 941
Score = 264 bits (133), Expect = 7e-069
Identities = 368/444 (82%), Gaps = 2/444 (0%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 128 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 187
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 188 aagctcctcctccaccgcggctacaccgtccgcgccaccgtccgggacaccgccgacccc 247
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 248 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 307
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 308 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 367
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 368 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 427
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 428 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 487
Query: 474 gttgtaacatcatctatggctgctg-tagcctacaacgggaggccaaggactcctgaggt 532
| ||||| ||||| |||||||||| | |||||| | |||| |||||| |||||||| ||
Sbjct: 488 atcgtaacctcatccatggctgctgttngcctac-atgggaagccaagaactcctgatgt 546
Query: 533 cacagttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 547 ggtagttgacgagacatggttttc 570
>gb|BF259786.2|BF259786 HVSMEf0020E05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020E05f, mRNA sequence
Length = 534
Score = 254 bits (128), Expect = 6e-066
Identities = 356/432 (82%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || ||||||| |||||| | |||
Sbjct: 103 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgactcctggctcgtc 162
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 163 aagctcctcctccaccgcggctacaccgtccgcgccaccgtccgggacaccgtcgacccc 222
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 223 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 282
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 283 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 342
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || ||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 343 cacacggcttctcccttttatcacaacgtcaaggaccctaaggctgagttacttgaccca 402
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 403 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 462
Query: 474 gttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtc 533
| ||||| ||||| ||||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 463 atcgtaacctcatccatggctgctgttgcctacaatgggaagccaagaactcctgatgtg 522
Query: 534 acagttgacgag 545
||||||||||
Sbjct: 523 gtagttgacgag 534
>gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41I09
5-PRIME, mRNA sequence
Length = 414
Score = 248 bits (125), Expect = 4e-064
Identities = 326/393 (82%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 22 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 81
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 82 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 141
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 142 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 201
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 202 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 261
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 262 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 321
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 322 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 381
Query: 474 gttgtaacatcatctatggctgctgtagcctac 506
| ||||| ||||| ||||||||||| ||||||
Sbjct: 382 atcgtaacctcatccatggctgctgttgcctac 414
>gb|AV931570.1|AV931570 AV931570 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23e18 3', mRNA sequence
Length = 605
Score = 238 bits (120), Expect = 4e-061
Identities = 378/464 (81%)
Strand = Plus / Minus
Query: 600 tccaagacgctggcagaggaggctgcttggaagttctcaagggataatggacttgaaatc 659
|||||||| || || ||||||||||| ||||||||| ||| ||||||||| | |||||
Sbjct: 592 tccaagacccttgccgaggaggctgcatggaagttcgcaaaagataatggattagaaata 533
Query: 660 gttactataaacccagcgatggttattggtcccctgctgcagcctacactaaataccagt 719
|||| ||||| ||| | ||||| |||||||||||| ||||||||||||| ||||| |||
Sbjct: 532 attacaataaatccaacaatggtcattggtcccctgttgcagcctacactgaatactagt 473
Query: 720 gctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaatttttgcttt 779
|| |||||||| ||||||| || ||||| ||||| |||||||| ||||||| ||||||
Sbjct: 472 gcagaagcaatattgaagtttataaatggatcatcttctacatacgccaatttctgcttt 413
Query: 780 ggatgggttaatgtcaaggatgttgccctggcccatatccttgcatacgaggttccctca 839
|||||||| || || || |||||||||||||| |||||||| ||||| || | ||| |||
Sbjct: 412 ggatgggtaaacgttaaagatgttgccctggcacatatcctagcatatgaagatccttca 353
Query: 840 tcaaatggaaggtactgcatggtggaaagagttgttcactactcagaactggtgaacatt 899
|||| ||||| || |||||||| |||||||| ||||| |||| || || || || ||
Sbjct: 352 gcaaacggaagatattgcatggttgaaagagtcattcaccactcggaccttgtcaagatc 293
Query: 900 atccgcaacatgtatcctacccttcctcttccggacaagtgtgcagatgacaagccgttt 959
|| | | | ||||||||| |||| | || |||||||||||||||||| || |||
Sbjct: 292 atacacgagatgtatcctgaatttccagtgccagacaagtgtgcagatgacgctcctttt 233
Query: 960 gtcccaccctaccaagtatcaaaggagaagataaaaagcataggcatcgagttgattcca 1019
| | || ||||||||| |||||||| ||||||| ||| | ||||| ||| |||||||
Sbjct: 232 gccacaatctaccaagtgtcaaaggacaagataagaagtctgggcatggagctgattccc 173
Query: 1020 ctggagacgagcgtcaaggagaccatcgaaagcttgaaagagaa 1063
|||||||||||| |||||||||| ||||| || |||||||||||
Sbjct: 172 ctggagacgagcctcaaggagactatcgagagtttgaaagagaa 129
>gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. vulgare cDNA clone HA08A23
5-PRIME, mRNA sequence
Length = 497
Score = 238 bits (120), Expect = 4e-061
Identities = 318/384 (82%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 114 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 173
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 174 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 233
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 234 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 293
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 294 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 353
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 354 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 413
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtg 473
||||| || || || |||||||||||| |||| |||||||| || || ||||| | |||
Sbjct: 414 gcagtcaatggtacgctcaatgttctccgttcctgcaagaaggcctcaattaagagagtg 473
Query: 474 gttgtaacatcatctatggctgct 497
| ||||| ||||| |||||||||
Sbjct: 474 atcgtaacctcatccatggctgct 497
>gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. vulgare cDNA clone HS08E02
5-PRIME, mRNA sequence
Length = 453
Score = 232 bits (117), Expect = 2e-059
Identities = 285/341 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 79 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 138
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 139 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 198
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 199 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 258
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 259 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 318
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 319 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 378
Query: 414 gcagttaagggaacactcaatgttctcggttcatgcaagaa 454
||||| || || || |||||||||||| |||| ||||||||
Sbjct: 379 gcagtcaatggtacgctcaatgttctccgttcctgcaagaa 419
>gb|BI960410.1|BI960410 HVSMEn0024I04f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024I04f,
mRNA sequence
Length = 675
Score = 224 bits (113), Expect = 6e-057
Identities = 390/481 (81%), Gaps = 1/481 (0%)
Strand = Plus / Plus
Query: 583 agcaatggtatattttgtccaagacgctggcagaggaggctgcttggaagttctcaaggg 642
||||||||||| | | |||||||| || || ||||||||||| ||||||||| ||| |
Sbjct: 51 agcaatggtatgtgctatccaagacccttgccgaggaggctgcatggaagttcgcaaaag 110
Query: 643 ataatggacttgaaatcgttactataaacccagcgatggttattggtcccctgctgcagc 702
|||||||| | ||||| |||| ||||| ||| | ||||| |||||||||||| ||||||
Sbjct: 111 ataatggattagaaataattacaataaatccaacaatggtcattggtcccctgttgcagc 170
Query: 703 ctacactaaataccagtgctgaagcaatcctgaagttaatcaatgggtcatcgtctacat 762
||||||| ||||| ||||| |||||||| ||||||| || ||||| ||||| |||||||
Sbjct: 171 ctacactgaatactagtgcagaagcaatattgaagtttataaatggatcatcttctacat 230
Query: 763 atcccaatttttgctttggatgggttaatgtcaaggatgttgccctggcccatatccttg 822
| ||||||| |||||||||||||| || || || |||||||||||||| |||||||| |
Sbjct: 231 acgccaatttctgctttggatgggtaaacgttaaagatgttgccctggcacatatcctag 290
Query: 823 catacgaggttccctcatcaaatggaaggtactgcatggtggaaagagttgttcactact 882
|||| || | ||| ||| |||| ||||| || |||||||| |||||||| ||||| |||
Sbjct: 291 catatgaagatccttcagcaaacggaagatattgcatggttgaaagagtcattcaccact 350
Query: 883 cagaactggtgaacattatccgcaacatgtatcctacccttcctcttccggacaagtgtg 942
| || || || || || || | | | ||||||||| |||| | || ||||||||||
Sbjct: 351 cggaccttgtcaagatcatacacgagatgtatcctgaatttccagtgccagacaagtgtg 410
Query: 943 cagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaagataaaaagcatag 1002
|||||||| || |||| | || ||||||||| |||||||| ||||||| ||| | |
Sbjct: 411 cagatgacgctccttttgccacaatctaccaagtgtcaaaggacaagataagaagtctgg 470
Query: 1003 gcatcgagttgattccactggagacgagcgtcaaggagaccatcgaaagcttgaaagaga 1062
|||| ||| ||||||| |||||||||||| |||| ||||| ||||| || ||||||||||
Sbjct: 471 gcatggagctgattcccctggagacgagcctcaa-gagactatcgagagtttgaaagaga 529
Query: 1063 a 1063
|
Sbjct: 530 a 530
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 536 agttgacgagacatggttttc 556
|||||||||||||||||||||
Sbjct: 3 agttgacgagacatggttttc 23
>gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. vulgare cDNA clone HA18N13
5-PRIME, mRNA sequence
Length = 399
Score = 222 bits (112), Expect = 2e-056
Identities = 277/332 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 64 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 123
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 124 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 183
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 184 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 243
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 244 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 303
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 304 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 363
Query: 414 gcagttaagggaacactcaatgttctcggttc 445
||||| || || || |||||||||||| ||||
Sbjct: 364 gcagtcaatggtacgctcaatgttctccgttc 395
>gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS18C15
5-PRIME, mRNA sequence
Length = 417
Score = 218 bits (110), Expect = 4e-055
Identities = 272/326 (83%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 92 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 151
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 152 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 211
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 212 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 271
Query: 294 gctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtattt 353
|| ||| || | ||||| || ||||||||||||| | || |||||| ||| ||
Sbjct: 272 gcaagcttgttggaagaaggcactttcgatgctgccatcgccggctgcgactgtgtcttc 331
Query: 354 catactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccca 413
|| || || |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 332 cacacggcttctcccttttatcacaatgtcaaggaccctaaggctgagttacttgaccca 391
Query: 414 gcagttaagggaacactcaatgttct 439
||||| || || || |||||||||||
Sbjct: 392 gcagtcaatggtacgctcaatgttct 417
>gb|AV918868.1|AV918868 AV918868 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i12 3', mRNA sequence
Length = 694
Score = 204 bits (103), Expect = 5e-051
Identities = 366/451 (81%), Gaps = 2/451 (0%)
Strand = Plus / Minus
Query: 615 gaggaggctgcttggaagttctcaagggataatggacttgaaatcgttactataaaccca 674
||||||||||| ||||||||| ||| ||||||||| | ||||| |||| ||||| |||
Sbjct: 655 gaggaggctgcatggaagttcgcaaaagataatggattagaaataattacaataaatcca 596
Query: 675 gcgatggtt-attggtcccctgctgcagcctacactaaataccagtgctgaagcaatcct 733
| |||| | |||||||||||| ||||||||||||| ||||| ||||| |||||||| |
Sbjct: 595 acaatgggtcattggtcccctgttgcagcctacactgaatactagtgcagaagcaatatt 536
Query: 734 gaagttaatcaatgggtcatcgtctacatatc-ccaatttttgctttggatgggttaatg 792
|||||| || ||||| ||||| |||||||| ||||||| |||||||||||||| || |
Sbjct: 535 gaagtttataaatggatcatcttctacatacggccaatttctgctttggatgggtaaacg 476
Query: 793 tcaaggatgttgccctggcccatatccttgcatacgaggttccctcatcaaatggaaggt 852
| || |||||||||||||| |||||||| ||||| || | ||| ||| |||| ||||| |
Sbjct: 475 ttaaagatgttgccctggcacatatcctagcatatgaagatccttcagcaaacggaagat 416
Query: 853 actgcatggtggaaagagttgttcactactcagaactggtgaacattatccgcaacatgt 912
| |||||||| |||||||| ||||| |||| || || || || || || | | | ||||
Sbjct: 415 attgcatggttgaaagagtcattcaccactcggaccttgtcaagatcatacacgagatgt 356
Query: 913 atcctacccttcctcttccggacaagtgtgcagatgacaagccgtttgtcccaccctacc 972
||||| |||| | || |||||||||||||||||| || |||| | || |||||
Sbjct: 355 atcctgaatttccagtgccagacaagtgtgcagatgacgctccttttgccacaatctacc 296
Query: 973 aagtatcaaaggagaagataaaaagcataggcatcgagttgattccactggagacgagcg 1032
|||| |||||||| ||||||| ||| | ||||| ||| ||||||| ||||||||||||
Sbjct: 295 aagtgtcaaaggacaagataagaagtctgggcatggagctgattcccctggagacgagcc 236
Query: 1033 tcaaggagaccatcgaaagcttgaaagagaa 1063
|||||||||| ||||| || |||||||||||
Sbjct: 235 tcaaggagactatcgagagtttgaaagagaa 205
>gb|CA027702.1|CA027702 HZ59M02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59M02
5-PRIME, mRNA sequence
Length = 464
Score = 204 bits (103), Expect = 5e-051
Identities = 304/371 (81%)
Strand = Plus / Plus
Query: 501 gcctacaacgggaggccaaggactcctgaggtcacagttgacgagacatggttttctgat 560
|||||||| |||| |||||| |||||||| || ||||||||||||||||||||| |
Sbjct: 14 gcctacaatgggaagccaagaactcctgatgtggtagttgacgagacatggttttcaagt 73
Query: 561 ccacaaatttgtgaaacaaatcagcaatggtatattttgtccaagacgctggcagaggag 620
|| | | || |||| ||||||||||||||| | | |||||||| || || ||||||
Sbjct: 74 gcagaggtctgcgaaaagaatcagcaatggtatgtgctatccaagacccttgccgaggag 133
Query: 621 gctgcttggaagttctcaagggataatggacttgaaatcgttactataaacccagcgatg 680
||||| ||||||||| ||| ||||||||| | ||||| |||| ||||| ||| | |||
Sbjct: 134 gctgcatggaagttcgcaaaagataatggattagaaataattacaataaatccaacaatg 193
Query: 681 gttattggtcccctgctgcagcctacactaaataccagtgctgaagcaatcctgaagtta 740
|| |||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 194 gtcattggtcccctgttgcagcctacactgaatactagtgcagaagcaatattgaagttt 253
Query: 741 atcaatgggtcatcgtctacatatcccaatttttgctttggatgggttaatgtcaaggat 800
|| ||||| ||||| |||||||| | ||||| |||||||||||||| || || || |||
Sbjct: 254 ataaatggatcatcttctacatacgcgaatttctgctttggatgggtaaacgttaaagat 313
Query: 801 gttgccctggcccatatccttgcatacgaggttccctcatcaaatggaaggtactgcatg 860
||||||||||| |||||||| ||||| || | ||| ||| |||| ||||| || ||||||
Sbjct: 314 gttgccctggcacatatcctagcatatgaagatccttcagcaaacggaagatattgcatg 373
Query: 861 gtggaaagagt 871
|| ||||||||
Sbjct: 374 gttgaaagagt 384
>gb|BI955632.1|BI955632 HVSMEm0023N15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023N15f, mRNA sequence
Length = 678
Score = 184 bits (93), Expect = 5e-045
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaagaaaacattgcac 248
||| |||||||||||||||||||||| || ||||||| ||||| |||||||| ||||||
Sbjct: 173 cgcngctacaccgtccgcgccaccgtccgggacaccgacgaccccaagaaaacgttgcac 232
Query: 249 ctgactgcgttggatggtgctaaggataggctgcacttatttaaagctagcctgctagaa 308
||| || |||| | || ||||| ||||||||||| || ||||| ||| || | |||
Sbjct: 233 ctgcaggccctggaagtagccaaggagaggctgcacttgttcaaagcaagcttgttggaa 292
Query: 309 gagggttctttcgatgctgcagttcatggatgcgacactgtatttcatactgcctctccc 368
|| || ||||||||||||| | || |||||| ||| || || || || ||||||
Sbjct: 293 gaaggcactttcgatgctgccatcgccggctgcgactgtgtcttccacacggcttctccc 352
Query: 369 ttttatcacaatgtcaaggatgctaaggcagagttacttgacccagcagttaagggaaca 428
||||||||||| |||||||| ||||||| |||||||||||||||||||| || || ||
Sbjct: 353 ttttatcacaacgtcaaggaccctaaggctgagttacttgacccagcagtcaatggtacg 412
Query: 429 ctcaatgttctcggttcatgcaagaaagcttctattaaaaaggtggttgtaacatcatct 488
|||||||||||| |||| |||||||| || || ||||| | ||| | ||||| |||||
Sbjct: 413 ctcaatgttctccgttcctgcaagaaggcctcaattaagagagtgatcgtaacctcatcc 472
Query: 489 atggctgctgtagcctacaacgggaggccaaggactcctgaggtcacagttgacgagaca 548
||||||||||| |||||||| |||||||||| |||||||| || | |||||||||||
Sbjct: 473 atggctgctgttgcctacaatgggaggccaaaaactcctgatgtggtaattgacgagaca 532
Query: 549 tggttttc 556
||||||||
Sbjct: 533 tggttttc 540
Score = 67.9 bits (34), Expect = 8e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctgg 167
|||| ||||||||||||||||||||||||||| || || |||||||| ||||||
Sbjct: 98 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctgg 151
>gb|BG343982.1|BG343982 HVSMEg0007E19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007E19f, mRNA sequence
Length = 799
Score = 182 bits (92), Expect = 2e-044
Identities = 275/336 (81%)
Strand = Plus / Plus
Query: 491 ggctgctgtagcctacaacgggaggccaaggactcctgaggtcacagttgacgagacatg 550
||||||||| |||||||| |||| |||||| |||||||| || |||||||||||||||
Sbjct: 1 ggctgctgttgcctacaatgggaagccaagaactcctgatgtggtagttgacgagacatg 60
Query: 551 gttttctgatccacaaatttgtgaaacaaatcagcaatggtatattttgtccaagacgct 610
|||||| | || | | || |||| ||| ||||||||||| | | |||||||| ||
Sbjct: 61 gttttcaagtgcagaggtctgcgaaaagaataagcaatggtatgtgctatccaagaccct 120
Query: 611 ggcagaggaggctgcttggaagttctcaagggataatggacttgaaatcgttactataaa 670
|| ||||||||||| ||||||||| ||| ||||||||| | ||||| |||| |||||
Sbjct: 121 tgccgaggaggctgcatggaagttcgcaaaagataatggattagaaataattacaataaa 180
Query: 671 cccagcgatggttattggtcccctgctgcagcctacactaaataccagtgctgaagcaat 730
||| | ||||| |||||||||||| ||||||||||||| ||||| ||||| ||||||||
Sbjct: 181 tccaacaatggtcattggtcccctgttgcagcctacactgaatactagtgcagaagcaat 240
Query: 731 cctgaagttaatcaatgggtcatcgtctacatatcccaatttttgctttggatgggttaa 790
||||||| || ||||| ||||| |||||||| ||||||| |||||||||||||| ||
Sbjct: 241 attgaagtttataaatggatcatcttctacatacaccaatttctgctttggatgggtaaa 300
Query: 791 tgtcaaggatgttgccctggcccatatccttgcata 826
|| || |||||||||||| | ||||| || |||||
Sbjct: 301 cgttaaagatgttgccctgacacatatgctagcata 336
>gb|BU976322.1|BU976322 HA03I06u HA Hordeum vulgare subsp. vulgare cDNA clone HA03I06
3-PRIME, mRNA sequence
Length = 607
Score = 176 bits (89), Expect = 1e-042
Identities = 302/373 (80%)
Strand = Plus / Minus
Query: 691 ccctgctgcagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatgggt 750
||||| ||||||||||||| ||||| ||||| |||||||| ||||||| || ||||| |
Sbjct: 607 ccctgttgcagcctacactgaatactagtgcagaagcaatattgaagtttataaatggat 548
Query: 751 catcgtctacatatcccaatttttgctttggatgggttaatgtcaaggatgttgccctgg 810
|||| |||||||| | ||||| |||||||||||||| || || || |||||||||||||
Sbjct: 547 catcttctacatacgcgaatttctgctttggatgggtaaacgttaaagatgttgccctgg 488
Query: 811 cccatatccttgcatacgaggttccctcatcaaatggaaggtactgcatggtggaaagag 870
| |||||||| ||||| || | ||| ||| |||| ||||| || |||||||| |||||||
Sbjct: 487 cacatatcctagcatatgaagatccttcagcaaacggaagatattgcatggttgaaagag 428
Query: 871 ttgttcactactcagaactggtgaacattatccgcaacatgtatcctacccttcctcttc 930
| ||||| |||| || || || || || || | | | ||||||||| |||| | |
Sbjct: 427 tcattcaccactcggaccttgtcaagatcatacacgagatgtatcctgaatttccagtgc 368
Query: 931 cggacaagtgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaaga 990
| |||||||||||||||||| || |||| | || ||||||||| |||||||| ||||
Sbjct: 367 cagacaagtgtgcagatgacgctccttttgccacaatctaccaagtgtcaaaggacaaga 308
Query: 991 taaaaagcataggcatcgagttgattccactggagacgagcgtcaaggagaccatcgaaa 1050
||| ||| | ||||| ||| ||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 307 taagaagtctgggcatggagctgattcccctggagacgagcctcaaggagactatcgaga 248
Query: 1051 gcttgaaagagaa 1063
| |||||||||||
Sbjct: 247 gtttgaaagagaa 235
>gb|CA000510.1|CA000510 HS08E02u HS Hordeum vulgare subsp. vulgare cDNA clone HS08E02
3-PRIME, mRNA sequence
Length = 547
Score = 174 bits (88), Expect = 5e-042
Identities = 301/372 (80%)
Strand = Plus / Minus
Query: 692 cctgctgcagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatgggtc 751
|||| ||||||||||||| ||||| ||||| |||||||| ||||||| || ||||| ||
Sbjct: 547 cctgttgcagcctacactgaatactagtgcagaagcaatattgaagtttataaatggatc 488
Query: 752 atcgtctacatatcccaatttttgctttggatgggttaatgtcaaggatgttgccctggc 811
||| |||||||| | ||||| |||||||||||||| || || || ||||||||||||||
Sbjct: 487 atcttctacatacgcgaatttctgctttggatgggtaaacgttaaagatgttgccctggc 428
Query: 812 ccatatccttgcatacgaggttccctcatcaaatggaaggtactgcatggtggaaagagt 871
|||||||| ||||| || | ||| ||| |||| ||||| || |||||||| ||||||||
Sbjct: 427 acatatcctagcatatgaagatccttcagcaaacggaagatattgcatggttgaaagagt 368
Query: 872 tgttcactactcagaactggtgaacattatccgcaacatgtatcctacccttcctcttcc 931
||||| |||| || || || || || || | | | ||||||||| |||| | ||
Sbjct: 367 cattcaccactcggaccttgtcaagatcatacacgagatgtatcctgaatttccagtgcc 308
Query: 932 ggacaagtgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaagat 991
|||||||||||||||||| || |||| | || ||||||||| |||||||| |||||
Sbjct: 307 agacaagtgtgcagatgacgctccttttgccacaatctaccaagtgtcaaaggacaagat 248
Query: 992 aaaaagcataggcatcgagttgattccactggagacgagcgtcaaggagaccatcgaaag 1051
|| ||| | ||||| ||| ||||||| |||||||||||| |||||||||| ||||| ||
Sbjct: 247 aagaagtctgggcatggagctgattcccctggagacgagcctcaaggagactatcgagag 188
Query: 1052 cttgaaagagaa 1063
|||||||||||
Sbjct: 187 tttgaaagagaa 176
>gb|AJ463296.1|AJ463296 AJ463296 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081G02F1, mRNA sequence
Length = 420
Score = 172 bits (87), Expect = 2e-041
Identities = 297/367 (80%)
Strand = Plus / Plus
Query: 697 tgcagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatgggtcatcgt 756
||||||||||||| ||||| ||||| |||||||| ||||||| || ||||| ||||| |
Sbjct: 5 tgcagcctacactgaatactagtgcagaagcaatattgaagtttataaatggatcatctt 64
Query: 757 ctacatatcccaatttttgctttggatgggttaatgtcaaggatgttgccctggcccata 816
||||||| | ||||| |||||||||||||| || || || |||||||||||||| ||||
Sbjct: 65 ctacatacgcgaatttctgctttggatgggtaaacgttaaagatgttgccctggcacata 124
Query: 817 tccttgcatacgaggttccctcatcaaatggaaggtactgcatggtggaaagagttgttc 876
|||| ||||| || | ||| ||| |||| ||||| || |||||||| |||||||| |||
Sbjct: 125 tcctagcatatgaagatccttcagcaaacggaagatattgcatggttgaaagagtcattc 184
Query: 877 actactcagaactggtgaacattatccgcaacatgtatcctacccttcctcttccggaca 936
|| |||| || || || || || || | | | ||||||||| |||| | || ||||
Sbjct: 185 accactcggaccttgtcaagatcatacacgagatgtatcctgaatttccagtgccagaca 244
Query: 937 agtgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaagataaaaa 996
|||||||||||||| || |||| | || ||||||||| |||||||| ||||||| ||
Sbjct: 245 agtgtgcagatgacgctccttttgccacaatctaccaagtgtcaaaggacaagataagaa 304
Query: 997 gcataggcatcgagttgattccactggagacgagcgtcaaggagaccatcgaaagcttga 1056
| | ||||| ||| ||||||| |||||||||||| |||||||||| ||||| || ||||
Sbjct: 305 gtctgggcatggagctgattcccctggagacgagcctcaaggagactatcgagagtttga 364
Query: 1057 aagagaa 1063
|||||||
Sbjct: 365 aagagaa 371
>gb|BE454559.2|BE454559 HVSMEh0094E03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0094E03f, mRNA sequence
Length = 894
Score = 165 bits (83), Expect = 5e-039
Identities = 146/167 (87%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||| | || |||||||||||||| || |||||||||||||||||||| |||| ||
Sbjct: 89 cggggaagctcgtctgcgtcaccggcgcgtccgggtacatcgcgtcctggatcgtcaagc 148
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaaga 237
||||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |
Sbjct: 149 tcctcctcgaccgcggctacaccgtccatggcaccgtccgggacaccgctgacccaaata 208
Query: 238 aaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||| ||| | ||||| || || ||||||||||||
Sbjct: 209 aaacattgcacctgcgtgctcttgatggagcaaacgataggctgcac 255
>gb|BF265665.2|BF265665 HV_CEa0013A06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013A06f, mRNA sequence
Length = 770
Score = 165 bits (83), Expect = 5e-039
Identities = 146/167 (87%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||| | || |||||||||||||| || |||||||||||||||||||| |||| ||
Sbjct: 78 cggggaagctcgtctgcgtcaccggcgcgtccgggtacatcgcgtcctggatcgtcaagc 137
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaaga 237
||||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |
Sbjct: 138 tcctcctcgaccgcggctacaccgtccatggcaccgtccgggacaccgctgacccaaata 197
Query: 238 aaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||| ||| | ||||| || || ||||||||||||
Sbjct: 198 aaacattgcacctgcgtgctcttgatggagcaaacgataggctgcac 244
>gb|AV934049.1|AV934049 AV934049 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baaln14 5', mRNA sequence
Length = 611
Score = 165 bits (83), Expect = 5e-039
Identities = 146/167 (87%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||| | || |||||||||||||| || |||||||||||||||||||| |||| ||
Sbjct: 75 cggggaagctcgtctgcgtcaccggcgcgtccgggtacatcgcgtcctggatcgtcaagc 134
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaaga 237
||||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |
Sbjct: 135 tcctcctcgaccgcggctacaccgtccatggcaccgtccgggacaccgctgacccaaata 194
Query: 238 aaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||| ||| | ||||| || || ||||||||||||
Sbjct: 195 aaacattgcacctgcgtgctcttgatggagcaaacgataggctgcac 241
Score = 63.9 bits (32), Expect = 1e-008
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 579 aatcagcaatggtatattttgtccaagacgctggcagaggaggctgctt-ggaagttctc 637
|||||||||||||||| ||||| ||||| || |||||||||||||||| ||||||||||
Sbjct: 536 aatcagcaatggtataccttgtctaagacccttgcagaggaggctgcttgggaagttctc 595
>gb|AV934152.1|AV934152 AV934152 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11d04 5', mRNA sequence
Length = 590
Score = 165 bits (83), Expect = 5e-039
Identities = 146/167 (87%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||| | || |||||||||||||| || |||||||||||||||||||| |||| ||
Sbjct: 90 cggggaagctcgtctgcgtcaccggcgcgtccgggtacatcgcgtcctggatcgtcaagc 149
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaaga 237
||||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |
Sbjct: 150 tcctcctcgaccgcggctacaccgtccatggcaccgtccgggacaccgctgacccaaata 209
Query: 238 aaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||| ||| | ||||| || || ||||||||||||
Sbjct: 210 aaacattgcacctgcgtgctcttgatggagcaaacgataggctgcac 256
Score = 40.1 bits (20), Expect = 0.18
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 579 aatcagcaatggtatattttgtccaagacgctggcagagg 618
|||||||||||||||| ||||| ||||| || |||||||
Sbjct: 551 aatcagcaatggtataccttgtctaagacccttgcagagg 590
>gb|BJ544054.1|BJ544054 BJ544054 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak18h07 5', mRNA sequence
Length = 521
Score = 165 bits (83), Expect = 5e-039
Identities = 146/167 (87%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||| | || |||||||||||||| || |||||||||||||||||||| |||| ||
Sbjct: 45 cggggaagctcgtctgcgtcaccggcgcgtccgggtacatcgcgtcctggatcgtcaagc 104
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaaga 237
||||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |
Sbjct: 105 tcctcctcgaccgcggctacaccgtccatggcaccgtccgggacaccgctgacccaaata 164
Query: 238 aaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||| ||| | ||||| || || ||||||||||||
Sbjct: 165 aaacattgcacctgcgtgctcttgatggagcaaacgataggctgcac 211
>gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B245 5-PRIME, mRNA sequence
Length = 408
Score = 165 bits (83), Expect = 5e-039
Identities = 182/215 (84%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 106 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 165
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 166 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 225
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 226 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 285
Query: 294 gctagcctgctagaagagggttctttcgatgctgc 328
|| ||| || | ||||| || |||||||||||||
Sbjct: 286 gcaagcttgttggaagaaggcactttcgatgctgc 320
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 369 ttttatcacaatgtcaaggatgctaaggcagagttacttgacccag 414
|||||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 363 ttttatcacaatgtcaaggaccctaagggtgagttactggacccag 408
>gb|AV936300.1|AV936300 AV936300 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10n14 3', mRNA sequence
Length = 604
Score = 161 bits (81), Expect = 7e-038
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 579 aatcagcaatggtatattttgtccaagacgctggcagaggaggctgcttggaagttctca 638
|||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 497 aatcagcaatggtataccttgtctaagacccttgcagaggaggctgcttggaagttctct 438
Query: 639 agggataatggacttgaaatcgttactataaacccagcgatggttattggtcccctgctg 698
| ||||| | || ||||| || || ||||| | ||||| |||||||| ||||||
Sbjct: 437 aaagataacgaacaagaaataattgtaatgaaccccacaatggtcattggtcctctgctg 378
Query: 699 cagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatgggtcatcgtct 758
||||||||||| || | |||| ||||||| || | || |||||||||| ||||| ||
Sbjct: 377 cagcctacacttaacgctagtgttgaagcagtcttaaacctaatcaatggatcatctcct 318
Query: 759 acatatcccaatttttgctttggatgggttaatgtcaaggatgttgccctggcccatatc 818
|||| || |||| | | ||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct: 317 acatgccctaattatgcccatggctgggtaaatgtcagagatgtggccctggcacatatc 258
Query: 819 cttgcatacgaggttccctcatcaaatggaaggtactgcatggtggaaagagttgttcac 878
|||||||| || ||||| ||| |||||||||| || ||||| || |||||||||| ||||
Sbjct: 257 cttgcatatgaagttccttcagcaaatggaagatattgcattgttgaaagagttgctcac 198
Query: 879 tactcagaactggtgaacattatccgcaacatgtatcctacccttcctcttccggacaag 938
||||| || || || || || || |||| |||||||| | | |||| || || || |||
Sbjct: 197 tactcggagcttgtcaagatcatatgcaagatgtatccgaacattccactcccagataag 138
Query: 939 tgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaagataaaaagc 998
||||||||||| | || || | ||| ||||||||||||| ||||| ||||||| ||||
Sbjct: 137 tgtgcagatgatgaaccactttttccaacctaccaagtatccaaggacaagataagaagc 78
Query: 999 ataggcatcgagttgattccactggagacgagcgtcaaggagaccatcgaaagcttgaaa 1058
| || || || ||||||| || ||||| ||| | || ||||| || |||||||| |||
Sbjct: 77 ttgggtatggaactgattccnctagagactagcattaaagagactatagaaagcttcaaa 18
Query: 1059 gagaaggg 1066
|| |||||
Sbjct: 17 gaaaaggg 10
>gb|AV934159.1|AV934159 AV934159 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11d16 5', mRNA sequence
Length = 339
Score = 159 bits (80), Expect = 3e-037
Identities = 145/167 (86%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||| | || |||||||||||||| || |||||||||||||||||||| |||| ||
Sbjct: 46 cggggaagctcgtctgcgtcaccggcgcgtccgggtacatcgcgtcctggatcgtcaagc 105
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaaga 237
||||||||||||||||||||||||||| | |||||| || ||||||| ||||||||| |
Sbjct: 106 tcctcctcgaccgcggctacaccgtccatggcaccgtccgggacaccgntgacccaaata 165
Query: 238 aaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||| ||| | ||||| || || ||||||||||||
Sbjct: 166 aaacattgcacctgcgtgctcttgatggagcaaacgataggctgcac 212
>gb|AV936403.1|AV936403 AV936403 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11d04 3', mRNA sequence
Length = 647
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 579 aatcagcaatggtatattttgtccaagacgctggcagaggaggctgcttggaagttctca 638
|||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 529 aatcagcaatggtataccttgtctaagacccttgcagaggaggctgcttggaagttctct 470
Query: 639 agggataatggacttgaaatcgttactataaacccagcgatggttattggtcccctgctg 698
| ||||| | || ||||| || || ||||| | ||||| |||||||| ||||||
Sbjct: 469 aaagataacgaacaagaaataattgtaatgaaccccacaatggtcattggtcctctgctg 410
Query: 699 cagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatgggtcatcgtct 758
||||||||||| || | |||| ||||||| || | || |||||||||| ||||| ||
Sbjct: 409 cagcctacacttaacgctagtgttgaagcagtcttaaacctaatcaatggatcatctcct 350
Query: 759 acatatcccaatttttgctttggatgggttaatgtcaaggatgttgccctggcccatatc 818
|||| || |||| | | ||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct: 349 acatgccctaattatgcccatggctgggtaaatgtcagagatgtggccctggcacatatc 290
Query: 819 cttgcatacgaggttccctcatcaaatggaaggtactgcatggtggaaagagttgttcac 878
|||||||| || ||||| ||| |||||||||| || ||||| || |||||||||| ||||
Sbjct: 289 cttgcatatgaagttccttcagcaaatggaagatattgcattgttgaaagagttgctcac 230
Query: 879 tactcagaactggtgaacattatccgcaacatgtatcctacccttcctcttccggacaag 938
||||| || || || || || || |||| |||||||| | | |||| || || || |||
Sbjct: 229 tactcggagcttgtcaagatcatatgcaagatgtatccgaacattccactcccagataag 170
Query: 939 tgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaagataaaaagc 998
||||||||||| | || || | ||| ||||||||||||| ||||| ||||||| ||||
Sbjct: 169 tgtgcagatgatgaaccactttttccaacctaccaagtatccaaggacaagataagaagc 110
Query: 999 ataggcatcgagttgattccactggagacgagcgtcaaggagaccatcgaaagcttgaaa 1058
| || || || ||||||| || ||||| ||| | || ||||| || |||||||| |||
Sbjct: 109 ttgggtatggaactgattcctctagagactagcattaaagagactatagaaagcttcaaa 50
Query: 1059 gagaaggg 1066
|| |||||
Sbjct: 49 gaaaaggg 42
>gb|AL502427.1|AL502427 AL502427 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I24u 3', mRNA sequence
Length = 700
Score = 155 bits (78), Expect = 4e-036
Identities = 312/388 (80%), Gaps = 2/388 (0%)
Strand = Plus / Minus
Query: 678 atggttattggtcccctgctgcagcctac-acta-aataccagtgctgaagcaatcctga 735
||||| |||||||||||| |||||||||| ||| ||||| ||||| |||||||| |||
Sbjct: 655 atggtcattggtcccctgttgcagcctaccacttgaatactagtgcagaagcaatattga 596
Query: 736 agttaatcaatgggtcatcgtctacatatcccaatttttgctttggatgggttaatgtca 795
|| | || ||||| ||||| |||||||| | ||||| |||||||||||||| || || |
Sbjct: 595 agnttataaatggatcatcttctacatacgcgaatttctgctttggatgggtaaacgtta 536
Query: 796 aggatgttgccctggcccatatccttgcatacgaggttccctcatcaaatggaaggtact 855
| |||||||||||||| |||||||| ||||| || | ||| ||| |||| ||||| || |
Sbjct: 535 aagatgttgccctggcacatatcctagcatatgaagatccttcagcaaacggaagatatt 476
Query: 856 gcatggtggaaagagttgttcactactcagaactggtgaacattatccgcaacatgtatc 915
||||||| |||||||| ||||| |||| || || || || || || | | | |||||||
Sbjct: 475 gcatggttgaaagagtcattcaccactcggaccttgtcaagatcatacacgagatgtatc 416
Query: 916 ctacccttcctcttccggacaagtgtgcagatgacaagccgtttgtcccaccctaccaag 975
|| |||| | || |||||||||||||||||| || |||| | || ||||||||
Sbjct: 415 ctgaatttccagtgccagacaagtgtgcagatgacgctccttttgccacaatctaccaag 356
Query: 976 tatcaaaggagaagataaaaagcataggcatcgagttgattccactggagacgagcgtca 1035
| |||||||| ||||||| ||| | ||||| ||| ||||||| |||||||||||| |||
Sbjct: 355 tgtcaaaggacaagataagaagtctgggcatggagctgattcccctggagacgagcctca 296
Query: 1036 aggagaccatcgaaagcttgaaagagaa 1063
||||| | ||||| || |||||||||||
Sbjct: 295 aggagnctatcgagagtttgaaagagaa 268
>gb|AL502063.1|AL502063 AL502063 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06F22u 3', mRNA sequence
Length = 690
Score = 153 bits (77), Expect = 2e-035
Identities = 284/353 (80%)
Strand = Plus / Minus
Query: 711 aataccagtgctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaat 770
||||| ||||| |||||||| ||||||| || ||||| ||||| |||||||| | |||
Sbjct: 548 aatactagtgcagaagcaatattgaagtttataaatggatcatcttctacatacgcgaat 489
Query: 771 ttttgctttggatgggttaatgtcaaggatgttgccctggcccatatccttgcatacgag 830
|| |||||||||||||| || || || |||||||||||||| |||||||| ||||| ||
Sbjct: 488 ttctgctttggatgggtaaacgttaaagatgttgccctggcacatatcctagcatatgaa 429
Query: 831 gttccctcatcaaatggaaggtactgcatggtggaaagagttgttcactactcagaactg 890
| ||| ||| |||| ||||| || |||||||| |||||||| ||||| |||| || ||
Sbjct: 428 gatccttcagcaaacggaagatattgcatggttgaaagagtcattcaccactcggacctt 369
Query: 891 gtgaacattatccgcaacatgtatcctacccttcctcttccggacaagtgtgcagatgac 950
|| || || || | | | ||||||||| |||| | || ||||||||||||||||||
Sbjct: 368 gtcaagatcatacacgagatgtatcctgaatttccagtgccagacaagtgtgcagatgac 309
Query: 951 aagccgtttgtcccaccctaccaagtatcaaaggagaagataaaaagcataggcatcgag 1010
|| |||| | || ||||||||| |||||||| ||||||| ||| | ||||| |||
Sbjct: 308 gctccttttgccacaatctaccaagtgtcaaaggacaagataagaagtctgggcatggag 249
Query: 1011 ttgattccactggagacgagcgtcaaggagaccatcgaaagcttgaaagagaa 1063
||||||| |||||||||||| |||||||||| ||||| || |||||||||||
Sbjct: 248 ctgattcccctggagacgagcctcaaggagactatcgagagtttgaaagagaa 196
>gb|AV936413.1|AV936413 AV936413 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11d16 3', mRNA sequence
Length = 606
Score = 151 bits (76), Expect = 7e-035
Identities = 334/420 (79%)
Strand = Plus / Minus
Query: 579 aatcagcaatggtatattttgtccaagacgctggcagaggaggctgcttggaagttctca 638
|||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 502 aatcagcaatggtataccttgtctaagacccttgcagaggaggctgcttggaagttctct 443
Query: 639 agggataatggacttgaaatcgttactataaacccagcgatggttattggtcccctgctg 698
| ||||| | || ||||| || || ||||| | ||||| |||||||| ||||||
Sbjct: 442 aaagataacgaacaagaaataattgtaatgaaccccacaatggtcattggtcctctgctg 383
Query: 699 cagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatgggtcatcgtct 758
||||||||||| || | |||| ||||||| || | || |||||||||| ||||| ||
Sbjct: 382 cagcctacacttaacgctagtgttgaagcagtcttaaacctaatcaatggatcatctcct 323
Query: 759 acatatcccaatttttgctttggatgggttaatgtcaaggatgttgccctggcccatatc 818
|||| || |||| | | ||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct: 322 acatgccctaattatgcccatggctgggtaaatgtcagagatgtggccctggcacatatc 263
Query: 819 cttgcatacgaggttccctcatcaaatggaaggtactgcatggtggaaagagttgttcac 878
|||||||| || ||||| ||| |||||||||| || ||||| || |||||||||| ||||
Sbjct: 262 cttgcatatgaagttccttcagcaaatggaagatattgcattgttgaaagagttgctcac 203
Query: 879 tactcagaactggtgaacattatccgcaacatgtatcctacccttcctcttccggacaag 938
||||| || || || || || || |||| |||||||| | | |||| || || || |||
Sbjct: 202 tactcggagcttgtcaagatcatatgcaagatgtatccgaacattccactcccagataag 143
Query: 939 tgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaagataaaaagc 998
||||||||||| | || || | ||| ||||||||||||| ||||| ||||||| ||||
Sbjct: 142 tgtgcagatgatgaaccactttttccaacctaccaagtatccaaggacaagataagaagc 83
>gb|BM372782.2|BM372782 EBpi05_SQ003_O16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_O16 5', mRNA sequence
Length = 623
Score = 151 bits (76), Expect = 7e-035
Identities = 160/188 (85%)
Strand = Plus / Plus
Query: 684 attggtcccctgctgcagcctacactaaataccagtgctgaagcaatcctgaagttaatc 743
|||||||||||| ||||||||||||| ||||| | ||| |||||||| ||||||| ||
Sbjct: 4 attggtcccctgttgcagcctacactgaatactattgcagaagcaatattgaagtttata 63
Query: 744 aatgggtcatcgtctacatatcccaatttttgctttggatgggttaatgtcaaggatgtt 803
||||| ||||| |||||||| ||||||| |||||||||||||| || || || ||||||
Sbjct: 64 aatggatcatcttctacatacgccaatttctgctttggatgggtaaacgtgaaagatgtt 123
Query: 804 gccctggcccatatccttgcatacgaggttccctcatcaaatggaaggtactgcatggtg 863
|||||||| |||||||||||||| || | ||| ||| |||| ||||| || ||||||||
Sbjct: 124 gccctggcacatatccttgcatatgaagatccttcagcaaacggaagatattgcatggtt 183
Query: 864 gaaagagt 871
||||||||
Sbjct: 184 gaaagagt 191
Score = 85.7 bits (43), Expect = 3e-015
Identities = 109/131 (83%)
Strand = Plus / Plus
Query: 933 gacaagtgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggagaagata 992
|||||||||||||||||| || |||| | || ||||||||| |||||||| ||||||
Sbjct: 253 gacaagtgtgcagatgacgctccttttgccacaatctaccaagtgtcaaaggacaagata 312
Query: 993 aaaagcataggcatcgagttgattccactggagacgagcgtcaaggagaccatcgaaagc 1052
| ||| | ||||| ||| ||||||| |||||||||||| |||| ||||| ||||| ||
Sbjct: 313 agaagtctgggcatggagctgattcccctggagacgagcctcaaagagactatcgagagt 372
Query: 1053 ttgaaagagaa 1063
|||||||||||
Sbjct: 373 ttgaaagagaa 383
>gb|AL450961.1|AL450961 AL450961 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05K15u 5', mRNA sequence
Length = 679
Score = 141 bits (71), Expect = 7e-032
Identities = 117/131 (89%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||| | || |||||||||||||| || |||||||||||||||||||| |||| ||
Sbjct: 82 cggggaagctcgtctgcgtcaccggcgcgtccgggtacatcgcgtcctggatcgtcaagc 141
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaaaga 237
||| ||||||||||||||||||||||| | |||||| || ||||||||||||||||| |
Sbjct: 142 tcc-cctcgaccgcggctacaccgtccatggcaccgtccgggacaccgctgacccaaata 200
Query: 238 aaacattgcac 248
|||||||||||
Sbjct: 201 aaacattgcac 211
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 686 tggtcccctgctgcagcctacact 709
|||||| |||||||||||||||||
Sbjct: 649 tggtcctctgctgcagcctacact 672
>gb|AJ436475.1|AJ436475 AJ436475 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200084D07F1, mRNA sequence
Length = 595
Score = 141 bits (71), Expect = 7e-032
Identities = 266/331 (80%)
Strand = Plus / Plus
Query: 733 tgaagttaatcaatgggtcatcgtctacatatcccaatttttgctttggatgggttaatg 792
||||||| || ||||| ||||| |||||||| | ||||| |||||||||||||| || |
Sbjct: 12 tgaagtttataaatggatcatcttctacatacgcgaatttctgctttggatgggtaaacg 71
Query: 793 tcaaggatgttgccctggcccatatccttgcatacgaggttccctcatcaaatggaaggt 852
| || |||||||||||||| |||||||| ||||| || | ||| ||| |||| ||||| |
Sbjct: 72 ttaaagatgttgccctggcacatatcctagcatatgaagatccttcagcaaacggaagat 131
Query: 853 actgcatggtggaaagagttgttcactactcagaactggtgaacattatccgcaacatgt 912
| |||||||| |||||||| ||||| |||| || || || || || || | | | ||||
Sbjct: 132 attgcatggttgaaagagtcattcaccactcggaccttgtcaagatcatacacgagatgt 191
Query: 913 atcctacccttcctcttccggacaagtgtgcagatgacaagccgtttgtcccaccctacc 972
||||| |||| | || |||||||||||||||||| || |||| | || |||||
Sbjct: 192 atcctgaatttccagtgccagacaagtgtgcagatgacgctccttttgccacaatctacc 251
Query: 973 aagtatcaaaggagaagataaaaagcataggcatcgagttgattccactggagacgagcg 1032
|||| |||||||| ||||||| ||| | ||||| ||| ||||||| ||||||||||||
Sbjct: 252 aagtgtcaaaggacaagataagaagtctgggcatggagctgattcccctggagacgagcc 311
Query: 1033 tcaaggagaccatcgaaagcttgaaagagaa 1063
|||||||||| ||||| || |||||||||||
Sbjct: 312 tcaaggagactatcgagagtttgaaagagaa 342
>gb|BQ665501.1|BQ665501 HX03O06u HX Hordeum vulgare subsp. vulgare cDNA clone HX03O06
3-PRIME, mRNA sequence
Length = 581
Score = 141 bits (71), Expect = 7e-032
Identities = 266/331 (80%)
Strand = Plus / Minus
Query: 733 tgaagttaatcaatgggtcatcgtctacatatcccaatttttgctttggatgggttaatg 792
||||||| || ||||| ||||| |||||||| | ||||| |||||||||||||| || |
Sbjct: 577 tgaagtttataaatggatcatcttctacatacgcgaatttctgctttggatgggtaaacg 518
Query: 793 tcaaggatgttgccctggcccatatccttgcatacgaggttccctcatcaaatggaaggt 852
| || |||||||||||||| |||||||| ||||| || | ||| ||| |||| ||||| |
Sbjct: 517 ttaaagatgttgccctggcacatatcctagcatatgaagatccttcagcaaacggaagat 458
Query: 853 actgcatggtggaaagagttgttcactactcagaactggtgaacattatccgcaacatgt 912
| |||||||| |||||||| ||||| |||| || || || || || || | | | ||||
Sbjct: 457 attgcatggttgaaagagtcattcaccactcggaccttgtcaagatcatacacgagatgt 398
Query: 913 atcctacccttcctcttccggacaagtgtgcagatgacaagccgtttgtcccaccctacc 972
||||| |||| | || |||||||||||||||||| || |||| | || |||||
Sbjct: 397 atcctgaatttccagtgccagacaagtgtgcagatgacgctccttttgccacaatctacc 338
Query: 973 aagtatcaaaggagaagataaaaagcataggcatcgagttgattccactggagacgagcg 1032
|||| |||||||| ||||||| ||| | ||||| ||| ||||||| ||||||||||||
Sbjct: 337 aagtgtcaaaggacaagataagaagtctgggcatggagctgattcccctggagacgagcc 278
Query: 1033 tcaaggagaccatcgaaagcttgaaagagaa 1063
|||||||||| ||||| || |||||||||||
Sbjct: 277 tcaaggagactatcgagagtttgaaagagaa 247
>gb|CA017187.1|CA017187 HV14G15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14G15
3-PRIME, mRNA sequence
Length = 575
Score = 141 bits (71), Expect = 7e-032
Identities = 266/331 (80%)
Strand = Plus / Minus
Query: 733 tgaagttaatcaatgggtcatcgtctacatatcccaatttttgctttggatgggttaatg 792
||||||| || ||||| ||||| |||||||| | ||||| |||||||||||||| || |
Sbjct: 570 tgaagtttataaatggatcatcttctacatacgcgaatttctgctttggatgggtaaacg 511
Query: 793 tcaaggatgttgccctggcccatatccttgcatacgaggttccctcatcaaatggaaggt 852
| || |||||||||||||| |||||||| ||||| || | ||| ||| |||| ||||| |
Sbjct: 510 ttaaagatgttgccctggcacatatcctagcatatgaagatccttcagcaaacggaagat 451
Query: 853 actgcatggtggaaagagttgttcactactcagaactggtgaacattatccgcaacatgt 912
| |||||||| |||||||| ||||| |||| || || || || || || | | | ||||
Sbjct: 450 attgcatggttgaaagagtcattcaccactcggaccttgtcaagatcatacacgagatgt 391
Query: 913 atcctacccttcctcttccggacaagtgtgcagatgacaagccgtttgtcccaccctacc 972
||||| |||| | || |||||||||||||||||| || |||| | || |||||
Sbjct: 390 atcctgaatttccagtgccagacaagtgtgcagatgacgctccttttgccacaatctacc 331
Query: 973 aagtatcaaaggagaagataaaaagcataggcatcgagttgattccactggagacgagcg 1032
|||| |||||||| ||||||| ||| | ||||| ||| ||||||| ||||||||||||
Sbjct: 330 aagtgtcaaaggacaagataagaagtctgggcatggagctgattcccctggagacgagcc 271
Query: 1033 tcaaggagaccatcgaaagcttgaaagagaa 1063
|||||||||| ||||| || |||||||||||
Sbjct: 270 tcaaggagactatcgagagtttgaaagagaa 240
>gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45H08
5-PRIME, mRNA sequence
Length = 412
Score = 137 bits (69), Expect = 1e-030
Identities = 153/182 (84%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||| ||| |||||||| || || |||||||| |||||| | |||
Sbjct: 107 gggatggggaaggtggtgngcgnnaccggcgcctcgggctacatcgcctcctggctcgtc 166
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct: 167 aagctcctcctccaccggggctacaccgtccgcgccaccgtccgggacaccgccgacccc 226
Query: 234 aagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaaa 293
|||||||| ||||||||| || |||| || || ||||| ||||||||||| || |||
Sbjct: 227 aagaaaacgttgcacctgcaggccctggaaggagccaaggagaggctgcacttgttcaaa 286
Query: 294 gc 295
||
Sbjct: 287 gc 288
Score = 87.7 bits (44), Expect = 9e-016
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 363 tctcccttttatcacaatgtcaaggatgctaaggcagagttacttgacccagcagt 418
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 356 tctcccttttatcacaatgtcaaggaccctaaggctgagttacttgacccagcagt 411
>gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0005A08f, mRNA sequence
Length = 819
Score = 135 bits (68), Expect = 4e-030
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 114 gggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtc 173
|||| ||||||||||||||||||||||||||| || || |||||||| |||||| | |||
Sbjct: 36 gggatggggaaggtggtgtgcgtcaccggcgcctcgggctacatcgcctcctggctcgtc 95
Query: 174 aggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccca 233
| |||||||||| ||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct: 96 aagctcctcctccaccgcggctacactgtccgcgccaccgtccgggacaccgccgacccc 155
Query: 234 aaga 237
||||
Sbjct: 156 aaga 159
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,775
Number of Sequences: 312970
Number of extensions: 122775
Number of successful extensions: 32096
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31848
Number of HSP's gapped (non-prelim): 193
length of query: 1311
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1292
effective length of database: 169,188,109
effective search space: 218591036828
effective search space used: 218591036828
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)