BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA010479.1|CA010479 HT09N23u HT Hordeum vulgare subsp. v... 151 3e-035
gb|CB876883.1|CB876883 HP02M04T HP Hordeum vulgare subsp. v... 151 3e-035
gb|CB879567.1|CB879567 HP02M04w HP Hordeum vulgare subsp. v... 151 3e-035
gb|CB876594.1|CB876594 HX11M09w HX Hordeum vulgare subsp. v... 143 8e-033
gb|CB876200.1|CB876200 HX10J08w HX Hordeum vulgare subsp. v... 137 5e-031
gb|CA013907.1|CA013907 HT09N23r HT Hordeum vulgare subsp. v... 129 1e-028
gb|BJ459873.1|BJ459873 BJ459873 K. Sato unpublished cDNA li... 123 7e-027
gb|BM442085.2|BM442085 EBan01_SQ002_C10_R anther, yellow st... 121 3e-026
gb|AV914084.1|AV914084 AV914084 K. Sato unpublished cDNA li... 119 1e-025
gb|AV918145.1|AV918145 AV918145 K. Sato unpublished cDNA li... 119 1e-025
gb|AV918687.1|AV918687 AV918687 K. Sato unpublished cDNA li... 119 1e-025
gb|AV919125.1|AV919125 AV919125 K. Sato unpublished cDNA li... 119 1e-025
gb|AV919693.1|AV919693 AV919693 K. Sato unpublished cDNA li... 119 1e-025
gb|AV920406.1|AV920406 AV920406 K. Sato unpublished cDNA li... 119 1e-025
gb|BJ466412.1|BJ466412 BJ466412 K. Sato unpublished cDNA li... 119 1e-025
gb|BJ466618.1|BJ466618 BJ466618 K. Sato unpublished cDNA li... 119 1e-025
gb|BJ452324.1|BJ452324 BJ452324 K. Sato unpublished cDNA li... 107 4e-022
gb|BJ464456.1|BJ464456 BJ464456 K. Sato unpublished cDNA li... 84 6e-015
gb|AV918067.1|AV918067 AV918067 K. Sato unpublished cDNA li... 72 2e-011
gb|BF267436.2|BF267436 HV_CEa0017O20f Hordeum vulgare seedl... 68 4e-010
gb|BM098690.1|BM098690 EBem08_SQ003_M19_R embryo, 40 DPA, n... 58 4e-007
gb|AV919828.1|AV919828 AV919828 K. Sato unpublished cDNA li... 42 0.021
gb|BI950296.1|BI950296 HVSMEl0020C07f Hordeum vulgare spike... 40 0.084
>gb|CA010479.1|CA010479 HT09N23u HT Hordeum vulgare subsp. vulgare cDNA clone HT09N23
3-PRIME, mRNA sequence
Length = 505
Score = 151 bits (76), Expect = 3e-035
Identities = 268/332 (80%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| |||||||||| || | || | ||||| |
Sbjct: 136 tggatgctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtct 195
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagt 379
||||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | || |
Sbjct: 196 tctctaaaggcctgaagatccaccctagcttctgaagtttctccgagctataaatagtat 255
Query: 380 tgacatcatcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagta 439
| | || |||| ||||| ||||||||||||| ||| | ||||| |||||||||||||
Sbjct: 256 ttccttcgacttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagta 315
Query: 440 tgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgctt 499
| |||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
Sbjct: 316 cgcttatcatatcagagacttttactggtactgaactgcagatgtaccgtccagacgcct 375
Query: 500 ctggcttttcgtaagccagaagaagagcgtcagcaacatcacgaacatccaccatatttc 559
|||| ||||| || |||| |||||||| || |||||||||||||||||||| | ||| |
Sbjct: 376 ctggtttttcatatgccaatagaagagcatcggcaacatcacgaacatccactagattcc 435
Query: 560 tgagtatgttttcaacagtctcgcgatctcct 591
||||| | ||||| ||||| || || ||||||
Sbjct: 436 tgagtttattttctacagtatcacgttctcct 467
>gb|CB876883.1|CB876883 HP02M04T HP Hordeum vulgare subsp. vulgare cDNA clone HP02M04
5-PRIME, mRNA sequence
Length = 633
Score = 151 bits (76), Expect = 3e-035
Identities = 268/332 (80%)
Strand = Plus / Minus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| |||||||||| || | || | ||||| |
Sbjct: 474 tggatgctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtct 415
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagt 379
||||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | || |
Sbjct: 414 tctctaaaggcctgaagatccaccctagcttctgaagtttctccgagctataaatagtat 355
Query: 380 tgacatcatcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagta 439
| | || |||| ||||| ||||||||||||| ||| | ||||| |||||||||||||
Sbjct: 354 ttccttcgacttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagta 295
Query: 440 tgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgctt 499
| |||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
Sbjct: 294 cgcttatcatatcagagacttttactggtactgaactgcagatgtaccgtccagacgcct 235
Query: 500 ctggcttttcgtaagccagaagaagagcgtcagcaacatcacgaacatccaccatatttc 559
|||| ||||| || |||| |||||||| || |||||||||||||||||||| | ||| |
Sbjct: 234 ctggtttttcatatgccaatagaagagcatcggcaacatcacgaacatccactagattcc 175
Query: 560 tgagtatgttttcaacagtctcgcgatctcct 591
||||| | ||||| ||||| || || ||||||
Sbjct: 174 tgagtttattttctacagtatcacgttctcct 143
>gb|CB879567.1|CB879567 HP02M04w HP Hordeum vulgare subsp. vulgare cDNA clone HP02M04
3-PRIME, mRNA sequence
Length = 665
Score = 151 bits (76), Expect = 3e-035
Identities = 268/332 (80%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| |||||||||| || | || | ||||| |
Sbjct: 192 tggatgctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtct 251
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagt 379
||||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | || |
Sbjct: 252 tctctaaaggcctgaagatccaccctagcttctgaagtttctccgagctataaatagtat 311
Query: 380 tgacatcatcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagta 439
| | || |||| ||||| ||||||||||||| ||| | ||||| |||||||||||||
Sbjct: 312 ttccttcgacttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagta 371
Query: 440 tgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgctt 499
| |||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
Sbjct: 372 cgcttatcatatcagagacttttactggtactgaactgcagatgtaccgtccagacgcct 431
Query: 500 ctggcttttcgtaagccagaagaagagcgtcagcaacatcacgaacatccaccatatttc 559
|||| ||||| || |||| |||||||| || |||||||||||||||||||| | ||| |
Sbjct: 432 ctggtttttcatatgccaatagaagagcatcggcaacatcacgaacatccactagattcc 491
Query: 560 tgagtatgttttcaacagtctcgcgatctcct 591
||||| | ||||| ||||| || || ||||||
Sbjct: 492 tgagtttattttctacagtatcacgttctcct 523
>gb|CB876594.1|CB876594 HX11M09w HX Hordeum vulgare subsp. vulgare cDNA clone HX11M09
3-PRIME, mRNA sequence
Length = 565
Score = 143 bits (72), Expect = 8e-033
Identities = 237/292 (81%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| |||||||||| || | || | ||||| |
Sbjct: 271 tggatgctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtct 330
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagt 379
||||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | || |
Sbjct: 331 tctctaaaggcctgaagatccaccctagcttctgaagtttctccgagctataaatagtat 390
Query: 380 tgacatcatcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagta 439
| | || |||| ||||| ||||||||||||| ||| | ||||| |||||||||||||
Sbjct: 391 ttccttcgacttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagta 450
Query: 440 tgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgctt 499
| |||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
Sbjct: 451 cgcttatcatatcagagacttttactggtactgaactgcagatgtaccgtccagacgcct 510
Query: 500 ctggcttttcgtaagccagaagaagagcgtcagcaacatcacgaacatccac 551
|||| ||||| || |||| |||||||| || ||||||||||||||||||||
Sbjct: 511 ctggtttttcatatgccaatagaagagcatcggcaacatcacgaacatccac 562
>gb|CB876200.1|CB876200 HX10J08w HX Hordeum vulgare subsp. vulgare cDNA clone HX10J08
3-PRIME, mRNA sequence
Length = 562
Score = 137 bits (69), Expect = 5e-031
Identities = 236/292 (80%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| |||||||||| || | || | ||||| |
Sbjct: 271 tggatgctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtct 330
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagt 379
||||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | || |
Sbjct: 331 tctctaaaggcctgaagatccaccctagcttctgaagtttctccgagctataaatagtat 390
Query: 380 tgacatcatcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagta 439
| | || |||| ||||| ||||||||||||| ||| | ||||| |||||||||||||
Sbjct: 391 ttccttcgacttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagta 450
Query: 440 tgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgctt 499
| |||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
Sbjct: 451 cgcttatcatatcagagacttttactggtactgaactgcagatgtaccgtccagacgcct 510
Query: 500 ctggcttttcgtaagccagaagaagagcgtcagcaacatcacgaacatccac 551
|||| |||| || |||| |||||||| || ||||||||||||||||||||
Sbjct: 511 ctggtntttcatatgccaatagaagagcatcggcaacatcacgaacatccac 562
>gb|CA013907.1|CA013907 HT09N23r HT Hordeum vulgare subsp. vulgare cDNA clone HT09N23
5-PRIME, mRNA sequence
Length = 636
Score = 129 bits (65), Expect = 1e-028
Identities = 164/197 (83%)
Strand = Plus / Minus
Query: 395 caaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcag 454
|||| ||||||||||||| ||| | ||||| ||||||||||||| | ||||||||||||
Sbjct: 612 caaagtttttgggataagtgtatgtcggatataaggtcttcagtacgcttatcatatcag 553
Query: 455 caacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaag 514
||||||| || ||||||||||||||| ||||||||||| ||||| ||||| || |
Sbjct: 552 agacttttactggtactgaactgcagatgtaccgtccagacgcctctggtttttcatatg 493
Query: 515 ccagaagaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaa 574
||| |||||||| || |||||||||||||||||||| | ||| |||||| | ||||| |
Sbjct: 492 ccaatagaagagcatcggcaacatcacgaacatccactagattcctgagtttattttcta 433
Query: 575 cagtctcgcgatctcct 591
|||| || || ||||||
Sbjct: 432 cagtatcacgttctcct 416
>gb|BJ459873.1|BJ459873 BJ459873 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j13 3', mRNA sequence
Length = 411
Score = 123 bits (62), Expect = 7e-027
Identities = 227/282 (80%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| |||||||||| || | || | ||||| |
Sbjct: 129 tggatgctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtct 188
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagt 379
||||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | || |
Sbjct: 189 tctctaaaggcctgaagatccaccctagcttctgaagtttctccgagctataaatagtat 248
Query: 380 tgacatcatcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagta 439
| | || |||| ||||| ||||||||||||| ||| | ||||| |||||||||||||
Sbjct: 249 ttccttcgacttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagta 308
Query: 440 tgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgctt 499
| |||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
Sbjct: 309 cgcttatcatatcagagacttttactggtactgaactgcagatgtaccgtccagacgcct 368
Query: 500 ctggcttttcgtaagccagaagaagagcgtcagcaacatcac 541
|||| ||||| || |||| |||||||| || ||||||||||
Sbjct: 369 ctggtttttcatatgccaatagaagagcatcggcaacatcac 410
>gb|BM442085.2|BM442085 EBan01_SQ002_C10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C10 5', mRNA sequence
Length = 213
Score = 121 bits (61), Expect = 3e-026
Identities = 136/161 (84%)
Strand = Plus / Minus
Query: 389 cttccacaaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttatca 448
|||| ||||| ||||||||||||| ||| | ||||| ||||||||||||| | ||||||
Sbjct: 179 cttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagtacgcttatca 120
Query: 449 tatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggctttt 508
|||||| ||||||| || ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 119 tatcagagacttttactggtactgaactgcagatgtaccgtccagacgcctctggttttt 60
Query: 509 cgtaagccagaagaagagcgtcagcaacatcacgaacatcc 549
| || |||| |||||||| || ||||||||||||||||||
Sbjct: 59 catatgccaatagaagagcatcggcaacatcacgaacatcc 19
>gb|AV914084.1|AV914084 AV914084 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4k02 5', mRNA sequence
Length = 593
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Minus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 514 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 455
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 454 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 395
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 394 agaagagcatcggcaacatcacggacatccac 363
Score = 50.1 bits (25), Expect = 9e-005
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 321 ctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 593 ctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 549
>gb|AV918145.1|AV918145 AV918145 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20a13 3', mRNA sequence
Length = 767
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 368 agaagagcatcggcaacatcacggacatccac 399
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct: 108 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 167
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 168 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 213
>gb|AV918687.1|AV918687 AV918687 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o04 3', mRNA sequence
Length = 630
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 218 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 277
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 278 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 337
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 338 agaagagcatcggcaacatcacggacatccac 369
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct: 78 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 137
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 138 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 183
>gb|AV919125.1|AV919125 AV919125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4k02 3', mRNA sequence
Length = 751
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 251 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 310
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 311 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 370
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 371 agaagagcatcggcaacatcacggacatccac 402
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct: 111 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 170
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 171 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 216
>gb|AV919693.1|AV919693 AV919693 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7d04 3', mRNA sequence
Length = 661
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 249 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 308
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 309 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 368
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 369 agaagagcatcggcaacatcacggacatccac 400
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct: 109 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 168
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 169 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 214
>gb|AV920406.1|AV920406 AV920406 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13n08 3', mRNA sequence
Length = 662
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 368 agaagagcatcggcaacatcacggacatccac 399
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct: 108 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 167
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 168 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 213
>gb|BJ466412.1|BJ466412 BJ466412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a03 3', mRNA sequence
Length = 663
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 368 agaagagcatcggcaacatcacggacatccac 399
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct: 108 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 167
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 168 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 213
>gb|BJ466618.1|BJ466618 BJ466618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33a09 3', mRNA sequence
Length = 681
Score = 119 bits (60), Expect = 1e-025
Identities = 129/152 (84%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| ||||
Sbjct: 266 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 325
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 326 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 385
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
|||||||| || ||||||||||| ||||||||
Sbjct: 386 agaagagcatcggcaacatcacggacatccac 417
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| |||||||||||||||| ||| |||| | ||||| |
Sbjct: 126 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 185
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 186 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 231
>gb|BJ452324.1|BJ452324 BJ452324 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j13 5', mRNA sequence
Length = 430
Score = 107 bits (54), Expect = 4e-022
Identities = 226/282 (80%), Gaps = 1/282 (0%)
Strand = Plus / Minus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| |||||||||| || | || | ||||| |
Sbjct: 282 tggatgctcagttcaggacgccagatgctctgtaggattccacgctatctccgagggtct 223
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagt 379
||||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | || |
Sbjct: 222 tctctaaaggcctgaagatccaccctagcttctgaagtttctccgagctataaatagtat 163
Query: 380 tgacatcatcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagta 439
| | || |||| ||||| ||||||||||||| ||| | ||||| |||||||||||||
Sbjct: 162 ttccttcgacttctacaaagtttttgggataagtgtatgtcggatataaggtcttcagta 103
Query: 440 tgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgctt 499
| |||||||||||| ||||||| || ||||||||||||||| ||||||||||| |
Sbjct: 102 cgcttatcatatcagagacttttactggtactgaactgcagatgtaccgtccagacgcct 43
Query: 500 ctggcttttcgtaagccagaagaagagcgtcagcaacatcac 541
| || ||||| || |||| |||||||| || ||||||||||
Sbjct: 42 c-ggtttttcatatgccaatagaagagcatcggcaacatcac 2
>gb|BJ464456.1|BJ464456 BJ464456 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34g17 5', mRNA sequence
Length = 647
Score = 83.8 bits (42), Expect = 6e-015
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 474 actgcagatgtatcgtccagacgcttctggcttttcgtaagccagaagaagagcgtcagc 533
|||||||||||| |||||||| || ||||| ||||| || |||||||||||||| || ||
Sbjct: 607 actgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggc 548
Query: 534 aacatcacgaacatccac 551
||||||||| ||||||||
Sbjct: 547 aacatcacggacatccac 530
>gb|AV918067.1|AV918067 AV918067 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17k13 3', mRNA sequence
Length = 292
Score = 71.9 bits (36), Expect = 2e-011
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||||||||||| ||||||||| |||||| ||| || | | ||||| |
Sbjct: 50 tggatgctcagttcaggatgccagatgctttgttggattcgacactgnctccgagggtct 109
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| ||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 110 tctctacnggcctgaaggtccaccctagcttctgaagtttctcaga 155
Score = 61.9 bits (31), Expect = 2e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| ||| | |||||| ||||||||||| ||||| || | ||||| ||||
Sbjct: 190 tttttgggataagtgtatgttggatataaggtcttcagaatgttnatgacatcagaaact 249
Query: 460 tttatt 465
||||||
Sbjct: 250 tttatt 255
>gb|BF267436.2|BF267436 HV_CEa0017O20f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017O20f, mRNA sequence
Length = 934
Score = 67.9 bits (34), Expect = 4e-010
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| |||| ||||||| |||||||| |||||| ||| |||| | ||||| |
Sbjct: 149 tggatgctcagttcaagatgccagatgctttgggggattctacactgtctccgagggtct 208
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 365
||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 209 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 254
Score = 38.2 bits (19), Expect = 0.33
Identities = 56/67 (83%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 400 tttttgggataagggta-agatggatacaaggtcttcagtatgtttatcatatcagcaac 458
||||||||||||| ||| | |||||| |||||||||| |||||||| | |||| |||
Sbjct: 290 tttttgggataagtgtattgttggatataaggtcttcaaaatgtttatgacatcaaaaac 349
Query: 459 ttttatt 465
|||||||
Sbjct: 350 ttttatt 356
>gb|BM098690.1|BM098690 EBem08_SQ003_M19_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_M19 5', mRNA sequence
Length = 387
Score = 58.0 bits (29), Expect = 4e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtc 308
|||||| ||| |||||||||||| |||||||||||||||| ||| ||||
Sbjct: 269 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtc 221
>gb|AV919828.1|AV919828 AV919828 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7m18 3', mRNA sequence
Length = 137
Score = 42.1 bits (21), Expect = 0.021
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 505 ttttcgtaagccagaagaagagcgtcagcaacatcacgaacatccac 551
||||| || |||| | ||||||| || ||||||||||| ||||||||
Sbjct: 5 ttttcatatgccanangaagagcatcggcaacatcacggacatccac 51
>gb|BI950296.1|BI950296 HVSMEl0020C07f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0020C07f, mRNA sequence
Length = 466
Score = 40.1 bits (20), Expect = 0.084
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 444 tatcatatcagcaactttta 463
||||||||||||||||||||
Sbjct: 401 tatcatatcagcaactttta 382
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,769
Number of Sequences: 312970
Number of extensions: 55769
Number of successful extensions: 14696
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14631
Number of HSP's gapped (non-prelim): 56
length of query: 622
length of database: 175,134,539
effective HSP length: 19
effective length of query: 603
effective length of database: 169,188,109
effective search space: 102020429727
effective search space used: 102020429727
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)