BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817274.1|CN817274 HRO4458_D09_H18ZS5 Lib AA070E1X Aven... 196 1e-050
gb|CN818044.1|CN818044 HRO4472_D08_G16ZS5 Lib AA070E1X Aven... 196 1e-050
gb|CN818561.1|CN818561 HRO4466_H04_P08ZS5 Lib AA070E1X Aven... 32 0.35
gb|CN816893.1|CN816893 HRO4526_A01_A02ZS5 Lib AA071E1X Aven... 30 1.4
gb|CK780242.1|CK780242 umn101 UMN cDNA from oat Avena sativ... 28 5.4
gb|CK780250.1|CK780250 umn194 UMN cDNA from oat Avena sativ... 28 5.4
gb|CK780264.1|CK780264 umn341 UMN cDNA from oat Avena sativ... 28 5.4
gb|CK780285.1|CK780285 umn869 UMN cDNA from oat Avena sativ... 28 5.4
gb|CN814712.1|CN814712 HRO4501_F10_K19ZS5 Lib AA071E1X Aven... 28 5.4
gb|CN814910.1|CN814910 HRO4503_G12_N23ZS5 Lib AA071E1X Aven... 28 5.4
gb|CN815197.1|CN815197 HRO4506_H12_O24ZS5 Lib AA071E1X Aven... 28 5.4
gb|CN815703.1|CN815703 HRO4514_F01_K02ZS5 Lib AA071E1X Aven... 28 5.4
gb|CN817163.1|CN817163 HRO4528_H10_P20ZS5 Lib AA071E1X Aven... 28 5.4
gb|CN818295.1|CN818295 HRO4470_B07_D14ZS5 Lib AA070E1X Aven... 28 5.4
gb|CN819546.1|CN819546 HRO4401_D09_G17ZS5 Lib AA069E1X Aven... 28 5.4
gb|CN819671.1|CN819671 HRO4402_G11_M22ZS5 Lib AA069E1X Aven... 28 5.4
gb|CN819709.1|CN819709 HRO4403_C02_F03ZS5 Lib AA069E1X Aven... 28 5.4
gb|CN820888.1|CN820888 HRO4421_B02_C03ZS5 Lib AA069E1X Aven... 28 5.4
gb|M38446.1|ASTAVE A.sativa avenin mRNA, complete cds, clon... 28 5.4
dbj|E08573.1| cDNA encoding 12S globulin A2B of oats 28 5.4
emb|AX840038.1| Sequence 107 from Patent WO03078629 28 5.4
emb|AX840624.1| Sequence 168 from Patent WO03077643 28 5.4
emb|X76737.1|AS12SGL1 A.sativa (L) mRNA for 12S globulin (1... 28 5.4
emb|X76738.1|AS12SGLOB A.sativa (L) mRNA for 12S globulin (... 28 5.4
>gb|CN817274.1|CN817274 HRO4458_D09_H18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_D09_H18, mRNA sequence
Length = 542
Score = 196 bits (99), Expect = 1e-050
Identities = 189/219 (86%)
Strand = Plus / Minus
Query: 176 ataaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtccc 235
||||||||| |||| ||||| || ||||||||||| ||| |||||||| ||||| ||
Sbjct: 227 ataaatgctttctgtcttaagcctccctctctctctagcaaataagtggtatactgttcc 168
Query: 236 ctttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaa 295
||||||||||||||| |||| | ||||| ||||||||||||||||||| || |||
Sbjct: 167 ttttttgctggaacagttacatgtgcgattcataaattttggagtcctttcttctttttc 108
Query: 296 atgaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtc 355
||||||||| ||||| |||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 107 atgaatctttgtagcgatatgtatgcagagacgacaggatgaatgaaccgctgccatgtc 48
Query: 356 gataagagctttgaaagaatcagatggaccatcatactt 394
||||| || |||||||||||||||||||||||||||||
Sbjct: 47 aataagtgccttgaaagaatcagatggaccatcatactt 9
Score = 67.9 bits (34), Expect = 6e-012
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 77 tggcctttcatccttccatacaggaacgtggttgagggacctaaat 122
||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct: 326 tggcctttcatccttccatacaggaacatggttgatggatctaaat 281
>gb|CN818044.1|CN818044 HRO4472_D08_G16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_D08_G16, mRNA sequence
Length = 842
Score = 196 bits (99), Expect = 1e-050
Identities = 189/219 (86%)
Strand = Plus / Minus
Query: 176 ataaatgctctctgacttaaaccgccctctctctcggataaacaagtggtaaactgtccc 235
||||||||| |||| |||||||| ||||||||||| | ||| |||||||| ||| | ||
Sbjct: 399 ataaatgctttctgtcttaaacctccctctctctctaacaaataagtggtatactattcc 340
Query: 236 ctttttgctggaacagctacaaggtcgatttgtaaattttggagtcctttcctcctttaa 295
||||||||||||||| |||| | ||||| ||||||||||||||||||| || |||
Sbjct: 339 ttttttgctggaacagttacatgtgcgattcataaattttggagtcctttcttctttttc 280
Query: 296 atgaatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtc 355
||||||||| ||||| |||||||| || || ||||| |||||||||||||||||||||||
Sbjct: 279 atgaatcttcgtagcgatatgtatgcagaggcgacatgatgaatgaaccgctgccatgtc 220
Query: 356 gataagagctttgaaagaatcagatggaccatcatactt 394
||||| || |||||||||||||||||||||||||||||
Sbjct: 219 aataagtgccttgaaagaatcagatggaccatcatactt 181
Score = 77.8 bits (39), Expect = 7e-015
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 12 cgttgtgttagaccgactgggtaaattctgtatagtttcaggtcatccccacctctaata 71
|||| ||| ||||| ||||| ||||||||||| | |||| ||||||||||||| ||
Sbjct: 563 cgttctgtaagaccaactggataaattctgtacaccttcaactcatccccacctcgtatg 504
Query: 72 ctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaat 122
|| | |||||||||||||||||||| |||||| ||||||| ||| ||||||
Sbjct: 503 cttgatggcctttcatccttccatataggaacatggttgatggatctaaat 453
>gb|CN818561.1|CN818561 HRO4466_H04_P08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_H04_P08, mRNA sequence
Length = 699
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 261 cgatttgtaaattttg 276
||||||||||||||||
Sbjct: 456 cgatttgtaaattttg 471
>gb|CN816893.1|CN816893 HRO4526_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A01_A02, mRNA sequence
Length = 621
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 364 ctttgaaagaatcagatgg 382
|||||| ||||||||||||
Sbjct: 149 ctttgagagaatcagatgg 131
>gb|CK780242.1|CK780242 umn101 UMN cDNA from oat Avena sativa cDNA clone JMT4_D11 5', mRNA
sequence
Length = 369
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 189 gtaaattttggagt 176
>gb|CK780250.1|CK780250 umn194 UMN cDNA from oat Avena sativa cDNA clone JMT4_E07 5', mRNA
sequence
Length = 304
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 131 gtaaattttggagt 118
>gb|CK780264.1|CK780264 umn341 UMN cDNA from oat Avena sativa cDNA clone JMT4_F09 5', mRNA
sequence
Length = 439
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 264 gtaaattttggagt 251
>gb|CK780285.1|CK780285 umn869 UMN cDNA from oat Avena sativa cDNA clone JMT18 5', mRNA
sequence
Length = 397
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 229 gtaaattttggagt 216
>gb|CN814712.1|CN814712 HRO4501_F10_K19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_F10_K19, mRNA sequence
Length = 831
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 caaggctcccagtg 156
||||||||||||||
Sbjct: 49 caaggctcccagtg 36
>gb|CN814910.1|CN814910 HRO4503_G12_N23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G12_N23, mRNA sequence
Length = 746
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 aattctgtatagtt 48
||||||||||||||
Sbjct: 622 aattctgtatagtt 635
>gb|CN815197.1|CN815197 HRO4506_H12_O24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_H12_O24, mRNA sequence
Length = 723
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 303 ttggtagcaatatgtata 320
|||| |||||||||||||
Sbjct: 102 ttggaagcaatatgtata 119
>gb|CN815703.1|CN815703 HRO4514_F01_K02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_F01_K02, mRNA sequence
Length = 305
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 atctcatataaatg 182
||||||||||||||
Sbjct: 287 atctcatataaatg 300
>gb|CN817163.1|CN817163 HRO4528_H10_P20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_H10_P20, mRNA sequence
Length = 521
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 303 ttggtagcaatatgtata 320
|||| |||||||||||||
Sbjct: 426 ttggaagcaatatgtata 409
>gb|CN818295.1|CN818295 HRO4470_B07_D14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_B07_D14, mRNA sequence
Length = 818
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 226 aaactgtcccctttttgc 243
||||||||||||| ||||
Sbjct: 578 aaactgtccccttattgc 561
>gb|CN819546.1|CN819546 HRO4401_D09_G17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_D09_G17, mRNA
sequence
Length = 731
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 287 ctcctttaaatgaatctt 304
|||||||||||| |||||
Sbjct: 293 ctcctttaaatgtatctt 310
>gb|CN819671.1|CN819671 HRO4402_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G11_M22, mRNA
sequence
Length = 613
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 281 cctttcctccttta 294
||||||||||||||
Sbjct: 146 cctttcctccttta 133
>gb|CN819709.1|CN819709 HRO4403_C02_F03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C02_F03, mRNA
sequence
Length = 422
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 atctcatataaatg 182
||||||||||||||
Sbjct: 256 atctcatataaatg 269
>gb|CN820888.1|CN820888 HRO4421_B02_C03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_B02_C03, mRNA
sequence
Length = 509
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 303 ttggtagcaatatgtata 320
|||| |||||||||||||
Sbjct: 413 ttggaagcaatatgtata 396
>gb|M38446.1|ASTAVE A.sativa avenin mRNA, complete cds, clone lambda-3B3
Length = 758
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 585 gtaaattttggagt 572
>dbj|E08573.1| cDNA encoding 12S globulin A2B of oats
Length = 1685
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 1512 gtaaattttggagt 1499
>emb|AX840038.1| Sequence 107 from Patent WO03078629
Length = 645
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 575 gtaaattttggagt 562
>emb|AX840624.1| Sequence 168 from Patent WO03077643
Length = 645
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 575 gtaaattttggagt 562
>emb|X76737.1|AS12SGL1 A.sativa (L) mRNA for 12S globulin (1556 bp)
Length = 1556
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 1383 gtaaattttggagt 1370
>emb|X76738.1|AS12SGLOB A.sativa (L) mRNA for 12S globulin (1685 bp)
Length = 1685
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtaaattttggagt 280
||||||||||||||
Sbjct: 1512 gtaaattttggagt 1499
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 854
Number of Sequences: 8143
Number of extensions: 854
Number of successful extensions: 255
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 26
length of query: 394
length of database: 4,702,463
effective HSP length: 16
effective length of query: 378
effective length of database: 4,572,175
effective search space: 1728282150
effective search space used: 1728282150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)