BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK13d03.yg.3.1
(2611 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA ... 145 2e-034
>gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO465_WHE2G0092, mRNA sequence
Length = 284
Score = 145 bits (73), Expect = 2e-034
Identities = 112/125 (89%)
Strand = Plus / Minus
Query: 2115 tcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggtggaccagc 2174
|||||||||| |||||| | ||||||||| || |||| ||||| ||||||||||||||||
Sbjct: 284 tcggcgactatgggttctccgggaagctggcgaggacatggttaaagtcggtggaccagc 225
Query: 2175 tgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggcttcggactca 2234
|||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 224 tgccgatgaacgtgggcgacaagcactacgacccgctgttcccgttcgggttcgggctca 165
Query: 2235 ccacc 2239
|||||
Sbjct: 164 ccacc 160
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5556
Number of Sequences: 8143
Number of extensions: 5556
Number of successful extensions: 1387
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 2
length of query: 2611
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2594
effective length of database: 4,564,032
effective search space: 11839099008
effective search space used: 11839099008
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)