BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL3a04.xg.2.1
(369 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815304.1|CN815304 HRO4508_B12_D24ZS5 Lib AA071E1X Aven... 48 5e-006
gb|CN815934.1|CN815934 HRO4515_B01_D01ZS5 Lib AA071E1X Aven... 34 0.083
gb|CN815960.1|CN815960 HRO4515_D03_H05ZS5 Lib AA071E1X Aven... 34 0.083
gb|CN816428.1|CN816428 HRO4520_F05_L10ZS5 Lib AA071E1X Aven... 34 0.083
gb|CN817456.1|CN817456 HRO4458_A12_B24ZS5 Lib AA070E1X Aven... 32 0.33
gb|CN818337.1|CN818337 HRO4469_G06_N11ZS5 Lib AA070E1X Aven... 32 0.33
gb|CN818445.1|CN818445 HRO4453_C05_F09ZS5 Lib AA070E1X Aven... 32 0.33
gb|CN818797.1|CN818797 HRO4456_B12_C24ZS5 Lib AA070E1X Aven... 32 0.33
>gb|CN815304.1|CN815304 HRO4508_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_B12_D24, mRNA sequence
Length = 556
Score = 48.1 bits (24), Expect = 5e-006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgattatatatacgggac 60
|||||| ||||||||||||||||| ||||||||||
Sbjct: 96 ttccgttttcacgtactgtgattacctatacgggac 131
>gb|CN815934.1|CN815934 HRO4515_B01_D01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B01_D01, mRNA sequence
Length = 387
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 ggaagaccaggagcaat 19
|||||||||||||||||
Sbjct: 332 ggaagaccaggagcaat 348
>gb|CN815960.1|CN815960 HRO4515_D03_H05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D03_H05, mRNA sequence
Length = 386
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 ggaagaccaggagcaat 19
|||||||||||||||||
Sbjct: 335 ggaagaccaggagcaat 351
>gb|CN816428.1|CN816428 HRO4520_F05_L10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_F05_L10, mRNA sequence
Length = 382
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 ggaagaccaggagcaat 19
|||||||||||||||||
Sbjct: 345 ggaagaccaggagcaat 361
>gb|CN817456.1|CN817456 HRO4458_A12_B24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A12_B24, mRNA sequence
Length = 504
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 260 caaatatataatagtc 275
||||||||||||||||
Sbjct: 483 caaatatataatagtc 468
>gb|CN818337.1|CN818337 HRO4469_G06_N11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_G06_N11, mRNA sequence
Length = 720
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 260 caaatatataatagtc 275
||||||||||||||||
Sbjct: 641 caaatatataatagtc 626
>gb|CN818445.1|CN818445 HRO4453_C05_F09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C05_F09, mRNA sequence
Length = 684
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 260 caaatatataatagtc 275
||||||||||||||||
Sbjct: 648 caaatatataatagtc 633
>gb|CN818797.1|CN818797 HRO4456_B12_C24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_B12_C24, mRNA sequence
Length = 503
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 260 caaatatataatagtc 275
||||||||||||||||
Sbjct: 482 caaatatataatagtc 467
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 652
Number of Sequences: 8143
Number of extensions: 652
Number of successful extensions: 188
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 4,702,463
effective HSP length: 15
effective length of query: 354
effective length of database: 4,580,318
effective search space: 1621432572
effective search space used: 1621432572
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)