BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAO3g02.yg.2.1
(344 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816242.1|CN816242 HRO4518_E06_I12ZS5 Lib AA071E1X Aven... 58 5e-009
gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Aven... 58 5e-009
gb|CN816654.1|CN816654 HRO4523_C06_F11ZS5 Lib AA071E1X Aven... 58 5e-009
gb|CN819728.1|CN819728 HRO4403_D10_H19ZS5 Lib AA069E1X Aven... 58 5e-009
gb|CN821549.1|CN821549 HRO4426_E11_I22ZS5 Lib AA069E1X Aven... 58 5e-009
>gb|CN816242.1|CN816242 HRO4518_E06_I12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_E06_I12, mRNA sequence
Length = 723
Score = 58.0 bits (29), Expect = 5e-009
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 210 aatggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgat 269
|||||| |||||||||||||| || || | ||||||| |||| |||| ||| | |||||
Sbjct: 266 aatggttcgcatattatgcaatgaatgtgaggcaatagcagaggtgcgtttcaacttgat 325
Query: 270 tgcgcacaagtgccagaatnnnnantcatacaacac 305
||||| ||||||||||| | | |||||||||||
Sbjct: 326 tgcgctcaagtgccagagttgccagtcatacaacac 361
Score = 42.1 bits (21), Expect = 3e-004
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 gtcataccattcatgtaaagtgcctgaaagaaatgga 95
||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 115 gtcatacaattcatgaaaactgcttgaaagaaatgga 151
>gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C05_F10, mRNA sequence
Length = 851
Score = 58.0 bits (29), Expect = 5e-009
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 210 aatggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgat 269
|||||| |||||||||||||| || || | ||||||| |||| |||| ||| | |||||
Sbjct: 709 aatggttcgcatattatgcaatgaatgtgaggcaatagcagaggtgcgtttcaacttgat 768
Query: 270 tgcgcacaagtgccagaatnnnnantcatacaacac 305
||||| ||||||||||| | | |||||||||||
Sbjct: 769 tgcgctcaagtgccagagttgccagtcatacaacac 804
Score = 42.1 bits (21), Expect = 3e-004
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 gtcataccattcatgtaaagtgcctgaaagaaatgga 95
||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 558 gtcatacaattcatgaaaactgcttgaaagaaatgga 594
>gb|CN816654.1|CN816654 HRO4523_C06_F11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_C06_F11, mRNA sequence
Length = 821
Score = 58.0 bits (29), Expect = 5e-009
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 210 aatggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgat 269
|||||| |||||||||||||| || || | ||||||| |||| |||| ||| | |||||
Sbjct: 622 aatggttcgcatattatgcaatgaatgtgaggcaatagcagaggtgcgtttcaacttgat 681
Query: 270 tgcgcacaagtgccagaatnnnnantcatacaacac 305
||||| ||||||||||| | | |||||||||||
Sbjct: 682 tgcgctcaagtgccagagttgccagtcatacaacac 717
>gb|CN819728.1|CN819728 HRO4403_D10_H19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_D10_H19, mRNA
sequence
Length = 525
Score = 58.0 bits (29), Expect = 5e-009
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 210 aatggtccgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgat 269
|||||| |||||||||||||| || || | ||||||| |||| |||| ||| | |||||
Sbjct: 13 aatggttcgcatattatgcaatgaatgtgaggcaatagcagacgtgcgtttcaacttgat 72
Query: 270 tgcgcacaagtgccagaatnnnnantcatacaacac 305
||||| ||||||||||| | | |||||||||||
Sbjct: 73 tgcgctcaagtgccagagttgccagtcatacaacac 108
>gb|CN821549.1|CN821549 HRO4426_E11_I22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_E11_I22, mRNA
sequence
Length = 462
Score = 58.0 bits (29), Expect = 5e-009
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 217 cgcatattatgcaacgactgcggggcaatatcagatgtgcagttccatttgattgcgcac 276
|||||||||||||| || || | ||||||| ||| ||||| ||| | |||||||||| |
Sbjct: 11 cgcatattatgcaatgattgtgaggcaatacaagaggtgcatttcaacttgattgcgctc 70
Query: 277 aagtgccagaatnnnnantcatacaacacccg 308
|||||||||| | | ||||||||||||||
Sbjct: 71 aagtgccagagttgcaactcatacaacacccg 102
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 450
Number of Sequences: 8143
Number of extensions: 450
Number of successful extensions: 143
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 9
length of query: 344
length of database: 4,702,463
effective HSP length: 15
effective length of query: 329
effective length of database: 4,580,318
effective search space: 1506924622
effective search space used: 1506924622
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)