BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Aven... 182 3e-046
gb|CN817810.1|CN817810 HRO4462_H03_P06ZS5 Lib AA070E1X Aven... 34 0.16
gb|CN818018.1|CN818018 HRO4472_F08_K16ZS5 Lib AA070E1X Aven... 34 0.16
gb|CN818472.1|CN818472 HRO4460_C07_E14ZS5 Lib AA070E1X Aven... 34 0.16
gb|CN819020.1|CN819020 HRO4474_C04_F08ZS5 Lib AA070E1X Aven... 34 0.16
>gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_F02_L03, mRNA
sequence
Length = 714
Score = 182 bits (92), Expect = 3e-046
Identities = 137/152 (90%)
Strand = Plus / Minus
Query: 42 aaagaagcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttg 101
||||| |||||||| |||||||||||| | |||||||| || ||||||| ||||||||||
Sbjct: 177 aaagaggcaaggaatgctgcgttgacaacatactgaagtggctgaggccgtccatggttg 118
Query: 102 agctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcac 161
|||||||| ||||||||||| |||||||||||||| ||| |||| |||||||| ||||||
Sbjct: 117 agctgtatcaatcctcctttcgtgaagttgaatgagttgtatactggtaaatatgagcac 58
Query: 162 atgacgttgtcggtttggttgtggaatgtcct 193
||||| ||||| ||||||||||||||||||||
Sbjct: 57 atgacattgtcagtttggttgtggaatgtcct 26
>gb|CN817810.1|CN817810 HRO4462_H03_P06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_H03_P06, mRNA sequence
Length = 829
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 163 tgacgttgtcggtttgg 179
|||||||||||||||||
Sbjct: 237 tgacgttgtcggtttgg 221
>gb|CN818018.1|CN818018 HRO4472_F08_K16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_F08_K16, mRNA sequence
Length = 738
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 163 tgacgttgtcggtttgg 179
|||||||||||||||||
Sbjct: 108 tgacgttgtcggtttgg 92
>gb|CN818472.1|CN818472 HRO4460_C07_E14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_C07_E14, mRNA sequence
Length = 659
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 163 tgacgttgtcggtttgg 179
|||||||||||||||||
Sbjct: 47 tgacgttgtcggtttgg 31
>gb|CN819020.1|CN819020 HRO4474_C04_F08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_C04_F08, mRNA sequence
Length = 668
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 163 tgacgttgtcggtttgg 179
|||||||||||||||||
Sbjct: 38 tgacgttgtcggtttgg 22
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1166
Number of Sequences: 8143
Number of extensions: 1166
Number of successful extensions: 341
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 5
length of query: 689
length of database: 4,702,463
effective HSP length: 16
effective length of query: 673
effective length of database: 4,572,175
effective search space: 3077073775
effective search space used: 3077073775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)