BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF25f04.yg.3.3
(1599 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818871.1|CN818871 HRO4456_A03_A06ZS5 Lib AA070E1X Aven... 151 2e-036
gb|BE439322.1|BE439322 CDO1407_WHE05G08F ITEC CDO Oat cDNA ... 34 0.37
>gb|CN818871.1|CN818871 HRO4456_A03_A06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_A03_A06, mRNA sequence
Length = 609
Score = 151 bits (76), Expect = 2e-036
Identities = 142/164 (86%)
Strand = Plus / Plus
Query: 1037 gagatttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcgg 1096
|||| ||||||||||| ||||||||||| || | ||||||||||||||||| || ||||
Sbjct: 11 gagacttcctggtgcaatcgaaggagttttcggtgcaggataacaaggatctgtatgcgg 70
Query: 1097 aagaggctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctga 1156
|||||||||||| |||||||||| ||| || ||||| ||| | ||||||| ||||| |
Sbjct: 71 aagaggctgctgtacaaagagaaaaggaacggcaacggatgatgtccattcctgggctca 130
Query: 1157 ttgcccctagcgaattgcaagacgagatggtagattcgtagtgt 1200
||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 131 ttgccccgagtgaattgcaagacgagatggtagattcatagtgt 174
Score = 67.9 bits (34), Expect = 3e-011
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1286 tcttccagggtggtgaaaggtggctgctgtaattttatttttggttacctccac 1339
||||||| |||||||||||||| |||||||||||||||| | |||| |||||||
Sbjct: 249 tcttccatggtggtgaaaggtgcctgctgtaattttattctcggttgcctccac 302
Score = 36.2 bits (18), Expect = 0.093
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1552 gatccaggctgataggaacctt 1573
||||||| ||||||||||||||
Sbjct: 548 gatccagactgataggaacctt 569
>gb|BE439322.1|BE439322 CDO1407_WHE05G08F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1407_WHE05G08, mRNA sequence
Length = 399
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 687 gaaaaaattccaggctt 703
|||||||||||||||||
Sbjct: 132 gaaaaaattccaggctt 148
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4317
Number of Sequences: 8143
Number of extensions: 4317
Number of successful extensions: 1094
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 4
length of query: 1599
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1582
effective length of database: 4,564,032
effective search space: 7220298624
effective search space used: 7220298624
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)