BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010496.2.1
(1046 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815941.1|CN815941 HRO4515_B08_D15ZS5 Lib AA071E1X Aven... 38 0.015
gb|CN818564.1|CN818564 HRO4466_H07_P14ZS5 Lib AA070E1X Aven... 36 0.061
gb|CN821049.1|CN821049 HRO4422_H12_O24ZS5 Lib AA069E1X Aven... 36 0.061
>gb|CN815941.1|CN815941 HRO4515_B08_D15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B08_D15, mRNA sequence
Length = 787
Score = 38.2 bits (19), Expect = 0.015
Identities = 41/47 (87%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 175 cggtggtggcggcgcggcggggaacattgtgcggcacggcggagaac 221
|||||| ||||| ||| ||||||||| | |||||||||||||||||
Sbjct: 327 cggtggcggcggggcgttggggaacatgg-gcggcacggcggagaac 372
>gb|CN818564.1|CN818564 HRO4466_H07_P14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_H07_P14, mRNA sequence
Length = 683
Score = 36.2 bits (18), Expect = 0.061
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 360 cgttcttgtcgggcccgc 377
||||||||||||||||||
Sbjct: 405 cgttcttgtcgggcccgc 388
>gb|CN821049.1|CN821049 HRO4422_H12_O24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H12_O24, mRNA
sequence
Length = 661
Score = 36.2 bits (18), Expect = 0.061
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 215 ggagaacatggtgttctt 232
||||||||||||||||||
Sbjct: 55 ggagaacatggtgttctt 72
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1722
Number of Sequences: 8143
Number of extensions: 1722
Number of successful extensions: 527
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 4
length of query: 1046
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1030
effective length of database: 4,572,175
effective search space: 4709340250
effective search space used: 4709340250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)